Wall clock time and date at job start Tue Mar 31 2020 11:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00301 * 2 1 4 4 N 1.46900 * 109.47001 * 123.76906 * 3 2 1 5 5 C 1.46894 * 111.00197 * 60.35406 * 4 3 2 6 6 C 1.50702 * 109.47278 * 66.03783 * 5 4 3 7 7 H 1.07995 * 120.00100 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00080 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99854 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00125 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47314 * 60.00367 * 10 8 6 12 12 H 1.48499 * 109.47334 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47418 * 300.00282 * 10 8 6 14 14 C 1.46904 * 111.00160 * 296.39578 * 4 3 2 15 15 C 1.50701 * 109.47117 * 287.91614 * 14 4 3 16 16 C 1.35328 * 126.14274 * 94.50938 * 15 14 4 17 17 C 1.39911 * 107.93328 * 180.24386 * 16 15 14 18 18 N 1.30883 * 108.23700 * 359.55333 * 17 16 15 19 19 N 1.35211 * 126.14345 * 274.48299 * 15 14 4 20 20 C 1.40246 * 126.05186 * 0.02562 * 19 15 14 21 21 C 1.38829 * 120.04055 * 222.96161 * 20 19 15 22 22 C 1.38102 * 119.95812 * 179.72454 * 21 20 19 23 23 C 1.38484 * 120.04237 * 0.54968 * 22 21 20 24 24 F 1.35093 * 119.96071 * 179.75037 * 23 22 21 25 25 C 1.38487 * 120.08182 * 359.72272 * 23 22 21 26 26 C 1.38109 * 120.03890 * 0.02562 * 25 23 22 27 27 H 1.08000 * 119.99900 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99940 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.99907 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.46894 * 3.77616 * 3 2 1 31 31 H 1.08990 * 109.47619 * 243.77422 * 3 2 1 32 32 H 1.08995 * 109.47558 * 186.04446 * 5 4 3 33 33 H 1.09002 * 109.47104 * 306.04476 * 5 4 3 34 34 H 0.97005 * 120.00135 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.46611 * 167.92111 * 14 4 3 36 36 H 1.08990 * 109.46965 * 47.91846 * 14 4 3 37 37 H 1.08000 * 126.03420 * 359.97438 * 16 15 14 38 38 H 1.07998 * 125.88148 * 179.73640 * 17 16 15 39 39 H 1.08000 * 120.01714 * 359.97438 * 21 20 19 40 40 H 1.07995 * 119.98195 * 180.25374 * 22 21 20 41 41 H 1.08000 * 119.98194 * 179.97438 * 25 23 22 42 42 H 1.08000 * 120.01730 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9751 1.3441 1.1513 5 6 3.9488 0.2460 1.0894 6 6 4.8584 0.4473 -0.0952 7 1 4.7266 1.3054 -0.7375 8 6 5.8589 -0.4640 -0.3589 9 7 6.0190 -1.5093 0.4231 10 14 6.9867 -0.2142 -1.8267 11 1 7.7063 1.0770 -1.6840 12 1 7.9710 -1.3243 -1.8894 13 1 6.1801 -0.1961 -3.0734 14 6 2.2278 1.3145 2.4157 15 6 1.5404 2.6392 2.6241 16 6 0.2662 2.9399 2.2814 17 6 0.0258 4.2704 2.6413 18 7 1.1134 4.7492 3.1899 19 7 2.0857 3.7408 3.1876 20 6 3.3932 3.8537 3.6821 21 6 3.6260 4.4947 4.8913 22 6 4.9136 4.5999 5.3794 23 6 5.9735 4.0765 4.6579 24 9 7.2329 4.1848 5.1345 25 6 5.7438 3.4416 3.4488 26 6 4.4570 3.3299 2.9600 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9354 -0.0004 30 1 1.3572 2.1325 0.0677 31 1 2.6385 1.3927 -0.9218 32 1 4.5411 0.2335 2.0043 33 1 3.4211 -0.7021 0.9852 34 1 6.7231 -2.1503 0.2378 35 1 2.9162 1.1287 3.2402 36 1 1.4824 0.5202 2.3786 37 1 -0.4391 2.2722 1.8090 38 1 -0.8990 4.8086 2.4948 39 1 2.8002 4.9073 5.4518 40 1 5.0947 5.0949 6.3220 41 1 6.5716 3.0343 2.8873 42 1 4.2782 2.8344 2.0172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292815848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:17 Heat of formation + Delta-G solvation = 82.782462 kcal Electronic energy + Delta-G solvation = -26317.343044 eV Core-core repulsion = 22600.156966 eV Total energy + Delta-G solvation = -3717.186079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.96568 -42.56607 -39.80839 -39.01799 -34.89272 -34.41294 -33.72626 -32.33767 -31.89494 -29.55477 -28.98211 -27.72608 -25.56134 -24.31228 -24.16715 -22.87589 -21.83993 -21.01354 -20.36108 -18.77783 -18.46306 -18.10278 -17.47216 -16.89704 -16.66774 -16.62288 -16.11295 -16.00705 -15.65938 -15.24341 -15.11950 -14.86037 -14.54682 -14.50124 -14.13248 -14.03568 -13.76706 -13.62974 -13.35673 -13.18621 -12.91943 -12.59105 -12.53648 -12.31871 -12.24942 -12.04896 -11.80173 -11.60790 -11.36039 -10.85834 -10.59155 -10.23113 -10.21638 -9.87993 -9.16535 -9.02734 -8.17912 -6.25686 -0.26166 0.13359 0.94345 1.41927 1.42813 1.44763 1.46585 1.50346 1.89420 2.40760 2.44625 3.15741 3.16906 3.35134 3.63449 3.66110 3.80739 3.93490 4.03576 4.14236 4.22296 4.31255 4.33838 4.49881 4.61364 4.65925 4.73623 4.81684 4.88588 4.98728 5.02676 5.09316 5.18304 5.21926 5.27943 5.30451 5.36641 5.62672 5.64897 5.78915 5.82186 5.87073 6.08615 6.16657 6.29920 6.55564 6.73419 6.88895 7.43126 8.92195 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.006011 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.045773 B = 4657.177463 C = 7247.335124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.194 4.194 3 C 0.092 3.908 4 N -0.527 5.527 5 C 0.210 3.790 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.955 3.045 11 H -0.271 1.271 12 H -0.287 1.287 13 H -0.270 1.270 14 C 0.111 3.889 15 C 0.100 3.900 16 C -0.262 4.262 17 C 0.061 3.939 18 N -0.321 5.321 19 N -0.328 5.328 20 C 0.123 3.877 21 C -0.080 4.080 22 C -0.130 4.130 23 C 0.091 3.909 24 F -0.140 7.140 25 C -0.142 4.142 26 C -0.101 4.101 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.004 0.996 33 H -0.018 1.018 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.170 0.830 38 H 0.224 0.776 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 9.980 6.899 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.214 4.214 3 C -0.036 4.036 4 N -0.250 5.250 5 C 0.084 3.916 6 C -0.552 4.552 7 H 0.078 0.922 8 C -0.188 4.188 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.018 4.018 15 C -0.025 4.025 16 C -0.291 4.291 17 C -0.125 4.125 18 N -0.140 5.140 19 N -0.105 5.105 20 C 0.032 3.968 21 C -0.100 4.100 22 C -0.149 4.149 23 C 0.072 3.928 24 F -0.119 7.119 25 C -0.162 4.162 26 C -0.121 4.121 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.022 0.978 33 H -0.001 1.001 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.187 0.813 38 H 0.241 0.759 39 H 0.171 0.829 40 H 0.192 0.808 41 H 0.157 0.843 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.509 11.302 7.497 16.564 hybrid contribution 0.550 -1.973 -1.132 2.340 sum -8.959 9.329 6.365 14.415 Atomic orbital electron populations 1.23980 0.94627 1.02833 0.99270 1.23497 0.97182 0.99376 1.01309 1.21220 0.93955 0.94302 0.94081 1.62223 1.15221 1.46908 1.00614 1.19396 0.89220 0.86987 0.95950 1.21323 1.14349 1.08203 1.11364 0.92184 1.25690 0.99002 0.94902 0.99174 1.70053 1.33775 1.13391 1.39781 0.85654 0.78658 0.77636 0.80001 1.19663 1.21237 1.19546 1.20575 0.96695 0.90847 0.93685 1.21244 0.94299 0.89720 0.97205 1.21568 0.96161 0.98365 1.13035 1.24555 0.97762 0.94458 0.95773 1.77421 0.98609 1.11926 1.26044 1.45745 1.08886 1.08850 1.46975 1.17634 0.81060 1.03376 0.94740 1.20994 0.97803 0.98138 0.93078 1.21211 0.90101 1.01700 1.01920 1.17882 0.79723 1.01036 0.94195 1.91490 1.38133 1.94309 1.87965 1.21145 0.97991 1.01034 0.96024 1.21687 0.90665 0.98436 1.01297 0.87763 0.86507 0.90024 0.89730 0.91527 0.97821 1.00059 0.92879 0.91620 0.91226 0.81269 0.75924 0.82906 0.80817 0.84337 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 14.32 67.78 0.97 -3.17 16 2 C -0.19 -6.33 7.51 25.64 0.19 -6.14 16 3 C 0.09 3.23 5.47 85.56 0.47 3.69 16 4 N -0.53 -20.47 2.60 -909.97 -2.37 -22.84 16 5 C 0.21 10.18 4.41 85.56 0.38 10.56 16 6 C -0.51 -27.15 8.51 25.60 0.22 -26.93 16 7 H 0.06 3.15 7.10 -2.91 -0.02 3.13 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -53.61 13.29 21.45 0.28 -53.32 16 10 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.11 3.77 4.26 85.56 0.36 4.13 16 15 C 0.10 3.06 5.70 41.37 0.24 3.30 16 16 C -0.26 -6.45 9.71 22.00 0.21 -6.23 16 17 C 0.06 1.38 12.03 85.24 1.03 2.40 16 18 N -0.32 -9.35 12.43 -56.97 -0.71 -10.06 16 19 N -0.33 -10.36 3.70 -175.97 -0.65 -11.01 16 20 C 0.12 3.89 6.09 38.08 0.23 4.12 16 21 C -0.08 -2.06 9.85 22.38 0.22 -1.84 16 22 C -0.13 -3.02 10.02 22.30 0.22 -2.79 16 23 C 0.09 2.56 7.30 22.39 0.16 2.72 16 24 F -0.14 -3.95 17.26 44.97 0.78 -3.18 16 25 C -0.14 -4.61 10.02 22.30 0.22 -4.39 16 26 C -0.10 -3.49 8.59 22.38 0.19 -3.30 16 27 H 0.10 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.12 2.30 7.28 -2.91 -0.02 2.28 16 29 H 0.08 3.21 6.70 -2.91 -0.02 3.19 16 30 H 0.08 2.61 6.26 -2.38 -0.01 2.59 16 31 H 0.07 2.65 6.85 -2.39 -0.02 2.63 16 32 H 0.00 0.20 7.86 -2.39 -0.02 0.18 16 33 H -0.02 -0.96 6.17 -2.39 -0.01 -0.97 16 34 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 35 H 0.07 2.38 7.20 -2.39 -0.02 2.37 16 36 H 0.07 2.23 6.86 -2.39 -0.02 2.21 16 37 H 0.17 3.32 7.50 -2.91 -0.02 3.30 16 38 H 0.22 2.99 8.06 -2.91 -0.02 2.96 16 39 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 42 H 0.16 6.20 5.28 -2.91 -0.02 6.19 16 Total: -1.00 -62.10 353.04 6.18 -55.92 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 1.04 Total: 22.16 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 5.78 Total: -22.81 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -3.44 Total: -97.24 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.10 6.18 -55.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292815848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.705 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds