Wall clock time and date at job start Tue Mar 31 2020 10:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.47110 * 2 1 4 4 N 1.30825 * 125.95854 * 305.02475 * 3 2 1 5 5 C 1.33247 * 109.82286 * 179.97438 * 4 3 2 6 6 C 1.50709 * 125.52369 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.46998 * 90.00005 * 6 5 4 8 8 C 1.34783 * 119.99892 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99487 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99897 * 179.97438 * 8 7 6 11 11 C 1.39239 * 119.99572 * 185.16960 * 10 8 7 12 12 C 1.39484 * 119.83295 * 144.26606 * 11 10 8 13 13 C 1.36376 * 120.16778 * 180.21110 * 12 11 10 14 14 C 1.40870 * 119.82969 * 359.51585 * 13 12 11 15 15 C 1.41154 * 120.16231 * 180.27711 * 14 13 12 16 16 H 1.08000 * 120.00274 * 335.06261 * 15 14 13 17 17 C 1.39898 * 119.99870 * 155.07147 * 15 14 13 18 18 N 1.30875 * 119.99769 * 341.97820 * 17 15 14 19 19 Si 1.86799 * 119.99927 * 161.98825 * 17 15 14 20 20 H 1.48493 * 109.47333 * 94.97965 * 19 17 15 21 21 H 1.48507 * 109.46777 * 214.98164 * 19 17 15 22 22 H 1.48497 * 109.47000 * 334.97457 * 19 17 15 23 23 C 1.40868 * 119.67263 * 0.25964 * 14 13 12 24 24 C 1.36376 * 119.82744 * 359.97438 * 23 14 13 25 25 N 1.30706 * 108.94982 * 0.26159 * 5 4 3 26 26 N 1.34429 * 125.95894 * 124.99825 * 3 2 1 27 27 H 0.97006 * 126.82367 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.46934 * 60.00117 * 1 2 3 29 29 H 1.08994 * 109.47052 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46964 * 299.99835 * 1 2 3 31 31 H 1.08999 * 109.46964 * 240.00165 * 2 1 3 32 32 H 1.08998 * 109.46934 * 119.99883 * 2 1 3 33 33 H 1.09002 * 109.46867 * 329.99713 * 6 5 4 34 34 H 1.08997 * 109.47103 * 210.00276 * 6 5 4 35 35 H 0.96995 * 120.00671 * 359.97438 * 7 6 5 36 36 H 0.96998 * 120.00068 * 5.16882 * 10 8 7 37 37 H 1.08004 * 119.91431 * 0.02562 * 12 11 10 38 38 H 1.07999 * 120.08475 * 179.79389 * 13 12 11 39 39 H 0.97006 * 120.00018 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.08849 * 180.02562 * 23 14 13 41 41 H 1.08000 * 119.91407 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 1.7155 2.3477 -0.8672 5 6 2.3421 3.4838 -0.5636 6 6 2.2296 4.7773 -1.3288 7 7 1.1268 5.5727 -0.7838 8 6 0.8374 6.7770 -1.3156 9 8 1.4921 7.2032 -2.2472 10 7 -0.1776 7.5085 -0.8145 11 6 -0.5459 8.7018 -1.4304 12 6 -1.8894 9.0741 -1.4744 13 6 -2.2583 10.2392 -2.0796 14 6 -1.2773 11.0724 -2.6523 15 6 -1.6507 12.2827 -3.2754 16 1 -2.6468 12.3990 -3.6762 17 6 -0.7302 13.3316 -3.3739 18 7 0.3292 13.3468 -2.6057 19 14 -1.0137 14.7107 -4.6017 20 1 -1.6957 15.8431 -3.9254 21 1 0.2919 15.1696 -5.1406 22 1 -1.8622 14.2154 -5.7152 23 6 0.0780 10.6919 -2.5998 24 6 0.4310 9.5215 -1.9954 25 7 3.0739 3.2931 0.5024 26 7 2.8839 1.9571 0.8914 27 1 3.2895 1.5091 1.6502 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0377 4.5621 -2.3800 34 1 3.1609 5.3361 -1.2365 35 1 0.6042 5.2326 -0.0408 36 1 -0.6515 7.2038 -0.0249 37 1 -2.6398 8.4366 -1.0306 38 1 -3.2992 10.5245 -2.1158 39 1 0.9677 14.0739 -2.6743 40 1 0.8356 11.3258 -3.0364 41 1 1.4696 9.2283 -1.9547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296250571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:25 Heat of formation + Delta-G solvation = 75.924141 kcal Electronic energy + Delta-G solvation = -24340.385424 eV Core-core repulsion = 20642.821908 eV Total energy + Delta-G solvation = -3697.563516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58434 -39.79056 -37.41113 -35.41203 -34.44349 -34.14520 -32.99386 -32.61114 -30.60946 -29.39137 -28.96982 -27.13654 -24.79534 -24.62622 -21.79936 -21.34353 -21.02078 -20.71480 -19.94418 -18.41255 -17.85402 -17.23797 -16.71312 -16.12738 -15.46819 -15.23250 -14.82981 -14.80886 -14.61249 -14.14462 -13.85063 -13.39794 -13.20097 -13.04753 -12.71263 -12.56671 -12.44465 -12.07269 -11.97016 -11.76316 -11.65837 -11.26392 -11.05584 -11.00517 -10.61606 -10.57552 -10.40245 -10.02753 -9.89314 -9.62702 -9.39983 -9.04612 -8.87278 -8.81279 -7.42228 -6.91263 -6.65600 -4.21221 1.13208 2.16837 2.29400 2.76981 3.12715 3.13126 3.18513 3.21319 3.28211 3.55016 3.78067 3.99755 4.11894 4.24440 4.61275 4.69957 4.73025 4.75172 4.96275 5.29014 5.39967 5.50104 5.57142 5.75156 5.79547 5.85075 5.99828 6.23644 6.46528 6.54961 6.60063 6.89816 6.92963 7.13388 7.18953 7.38128 7.42270 7.69995 7.71327 7.93253 8.09347 8.14932 8.35431 8.55643 8.72263 8.96959 9.00485 9.18769 10.25912 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035561 B = 0.002102 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.186927 B =13319.814694 C =13738.266123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.283 3.717 4 N -0.523 5.523 5 C 0.218 3.782 6 C 0.238 3.762 7 N -0.747 5.747 8 C 0.700 3.300 9 O -0.574 6.574 10 N -0.665 5.665 11 C 0.012 3.988 12 C -0.106 4.106 13 C -0.216 4.216 14 C 0.104 3.896 15 C -0.460 4.460 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.791 5.791 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.156 4.156 24 C -0.085 4.085 25 N -0.295 5.295 26 N -0.481 5.481 27 H 0.440 0.560 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.393 0.607 36 H 0.390 0.610 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.280 0.720 40 H 0.119 0.881 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -24.192 8.385 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C 0.005 3.995 4 N -0.252 5.252 5 C -0.065 4.065 6 C 0.111 3.889 7 N -0.405 5.405 8 C 0.400 3.600 9 O -0.451 6.451 10 N -0.310 5.310 11 C -0.081 4.081 12 C -0.126 4.126 13 C -0.236 4.236 14 C 0.102 3.898 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.417 5.417 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.176 4.176 24 C -0.106 4.106 25 N -0.125 5.125 26 N -0.200 5.200 27 H 0.286 0.714 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.226 0.774 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.210 -23.095 7.557 24.662 hybrid contribution -0.237 -0.210 0.957 1.008 sum 3.972 -23.305 8.514 25.127 Atomic orbital electron populations 1.21704 0.92515 1.02654 1.03554 1.20192 0.97947 0.85839 1.04408 1.24513 0.90461 0.97603 0.86946 1.70385 1.27723 0.99343 1.27712 1.24264 0.93507 0.95811 0.92934 1.19139 0.91306 0.82605 0.95834 1.44909 1.36963 1.19051 1.39566 1.15878 0.81915 0.79801 0.82367 1.90925 1.52546 1.71075 1.30546 1.42019 1.35345 1.22744 1.30919 1.16974 0.92800 0.87681 1.10648 1.20013 0.92533 0.97878 1.02212 1.20506 0.98165 0.97925 1.07014 1.17663 0.91509 0.91892 0.88762 1.19517 0.99105 0.97220 1.33081 0.90471 1.25914 0.94225 0.99432 0.94725 1.69858 1.10112 1.30753 1.30955 0.86334 0.78814 0.80418 0.81346 1.19690 1.20065 1.18444 1.20983 0.97002 0.95724 1.03899 1.20583 0.97654 0.93419 0.98895 1.78102 1.24463 0.93426 1.16528 1.48093 1.37076 1.09138 1.25648 0.71383 0.90794 0.91296 0.92497 0.88103 0.89643 0.88635 0.89156 0.77400 0.77696 0.89306 0.88702 0.90915 0.86335 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.87 37.16 0.37 -0.29 16 2 C -0.04 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.28 2.29 7.51 -155.70 -1.17 1.12 16 4 N -0.52 -5.98 11.16 -8.16 -0.09 -6.07 16 5 C 0.22 2.67 7.51 -156.85 -1.18 1.49 16 6 C 0.24 3.18 6.30 -5.19 -0.03 3.14 16 7 N -0.75 -10.58 5.55 -66.41 -0.37 -10.95 16 8 C 0.70 13.14 8.40 -86.91 -0.73 12.41 16 9 O -0.57 -13.19 13.78 5.29 0.07 -13.12 16 10 N -0.66 -12.34 5.31 -14.10 -0.07 -12.41 16 11 C 0.01 0.27 6.30 -83.57 -0.53 -0.26 16 12 C -0.11 -2.39 9.90 -39.79 -0.39 -2.79 16 13 C -0.22 -5.37 9.74 -39.26 -0.38 -5.75 16 14 C 0.10 2.87 5.57 -106.80 -0.59 2.27 16 15 C -0.46 -12.47 9.03 -37.85 -0.34 -12.81 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 18 N -0.79 -21.07 10.99 55.55 0.61 -20.46 16 19 Si 0.91 19.13 29.60 -169.99 -5.03 14.10 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.16 -4.30 8.64 -39.26 -0.34 -4.64 16 24 C -0.09 -2.20 8.61 -39.79 -0.34 -2.55 16 25 N -0.30 -3.43 12.80 32.42 0.41 -3.02 16 26 N -0.48 -3.73 7.45 32.62 0.24 -3.48 16 27 H 0.44 1.73 8.96 -182.33 -1.63 0.09 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.39 4.67 8.48 -40.82 -0.35 4.32 16 36 H 0.39 5.73 8.84 -40.82 -0.36 5.37 16 37 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.12 3.38 6.19 -52.49 -0.32 3.06 16 41 H 0.11 2.82 6.24 -52.49 -0.33 2.50 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -34.28 355.03 -11.16 -45.44 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.35 Total: 11.80 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -5.94 Total: -7.18 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.73 Total: -56.39 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.28 -11.16 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296250571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.364 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds