Wall clock time and date at job start Tue Mar 31 2020 11:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 H 1.09003 * 109.46974 * 305.93252 * 3 2 1 5 5 N 1.46901 * 109.47283 * 65.92636 * 3 2 1 6 6 C 1.46895 * 111.00290 * 206.64256 * 5 3 2 7 7 H 1.08995 * 109.47237 * 321.95670 * 6 5 3 8 8 C 1.53001 * 109.47250 * 201.95093 * 6 5 3 9 9 C 1.50703 * 109.46979 * 65.00075 * 8 6 5 10 10 H 1.08007 * 119.99706 * 359.97438 * 9 8 6 11 11 C 1.37878 * 120.00241 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99816 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00153 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46875 * 60.00481 * 13 11 9 15 15 H 1.48498 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47317 * 300.00604 * 13 11 9 17 17 C 1.50705 * 109.47153 * 81.95117 * 6 5 3 18 18 C 1.38234 * 119.99503 * 47.37173 * 17 6 5 19 19 C 1.38240 * 119.99322 * 179.78588 * 18 17 6 20 20 C 1.38234 * 120.00436 * 0.44267 * 19 18 17 21 21 C 1.38233 * 119.99752 * 359.80942 * 20 19 18 22 22 C 1.38231 * 120.00268 * 227.64112 * 17 6 5 23 23 C 1.50692 * 109.47425 * 185.92857 * 3 2 1 24 24 C 1.38432 * 122.53787 * 99.73430 * 23 3 2 25 25 C 1.33385 * 114.91985 * 179.76304 * 24 23 3 26 26 S 1.75890 * 109.59404 * 0.47652 * 25 24 23 27 27 C 1.33384 * 122.54032 * 280.02611 * 23 3 2 28 28 H 1.09002 * 109.46842 * 63.36795 * 1 2 3 29 29 H 1.08991 * 109.47006 * 183.37395 * 1 2 3 30 30 H 1.09007 * 109.46963 * 303.37683 * 1 2 3 31 31 H 1.08994 * 109.47211 * 239.99631 * 2 1 3 32 32 H 1.09002 * 109.46795 * 119.99980 * 2 1 3 33 33 H 1.00908 * 111.00093 * 330.60288 * 5 3 2 34 34 H 1.08999 * 109.47491 * 184.99966 * 8 6 5 35 35 H 1.08993 * 109.47164 * 305.00411 * 8 6 5 36 36 H 0.96998 * 119.99992 * 180.02562 * 12 11 9 37 37 H 1.08004 * 120.00632 * 359.97438 * 18 17 6 38 38 H 1.08001 * 119.99659 * 180.27201 * 19 18 17 39 39 H 1.08002 * 120.00296 * 179.83285 * 20 19 18 40 40 H 1.07993 * 120.00368 * 180.02562 * 21 20 19 41 41 H 1.08006 * 119.99713 * 359.97438 * 22 17 6 42 42 H 1.08002 * 122.53800 * 359.97438 * 24 23 3 43 43 H 1.08000 * 125.20416 * 180.20924 * 25 24 23 44 44 H 1.08003 * 125.20456 * 359.97438 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5927 1.9861 -0.8321 5 7 1.6708 2.0925 1.2645 6 6 1.5515 3.5467 1.0938 7 1 2.3276 3.8975 0.4137 8 6 1.7133 4.2345 2.4509 9 6 3.1112 4.0069 2.9659 10 1 3.8138 3.4290 2.3836 11 6 3.4933 4.5363 4.1802 12 7 2.6376 5.2395 4.8894 13 14 5.2258 4.2536 4.8189 14 1 6.2061 4.8183 3.8570 15 1 5.3829 4.9213 6.1360 16 1 5.4654 2.7961 4.9715 17 6 0.1965 3.8759 0.5222 18 6 -0.9399 3.3070 1.0663 19 6 -2.1832 3.6124 0.5447 20 6 -2.2893 4.4795 -0.5266 21 6 -1.1525 5.0443 -1.0739 22 6 0.0904 4.7423 -0.5497 23 6 3.5399 1.4450 -0.1467 24 6 4.1692 1.6831 -1.3565 25 6 5.5020 1.6543 -1.3119 26 16 6.0298 1.2973 0.3275 27 6 4.3614 1.2124 0.8780 28 1 -0.3633 0.4607 -0.9187 29 1 -0.3633 -1.0258 0.0605 30 1 -0.3633 0.5654 0.8582 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8186 1.7010 1.6370 34 1 1.5369 5.3043 2.3394 35 1 0.9940 3.8193 3.1567 36 1 2.9065 5.6123 5.7436 37 1 -0.8567 2.6263 1.9007 38 1 -3.0713 3.1714 0.9726 39 1 -3.2605 4.7160 -0.9358 40 1 -1.2354 5.7220 -1.9106 41 1 0.9786 5.1836 -0.9772 42 1 3.6225 1.8807 -2.2668 43 1 6.1569 1.8202 -2.1546 44 1 4.0499 1.0043 1.8910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296890519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:45 Heat of formation + Delta-G solvation = 49.867775 kcal Electronic energy + Delta-G solvation = -24433.788170 eV Core-core repulsion = 21249.095228 eV Total energy + Delta-G solvation = -3184.692942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50346 -38.25601 -35.83225 -33.81232 -32.22473 -30.61447 -30.17371 -29.00901 -28.29521 -25.87059 -24.35166 -22.96641 -22.37334 -21.82093 -20.49199 -19.60937 -18.15811 -17.33705 -16.90087 -16.00532 -15.42084 -14.99150 -14.69743 -14.62291 -14.34025 -14.13200 -13.34029 -13.17849 -12.97994 -12.93531 -12.66148 -12.42072 -12.33265 -12.17731 -12.00190 -11.78392 -11.44489 -11.21047 -11.11046 -10.96216 -10.72126 -10.67545 -10.53038 -10.43283 -10.30458 -10.07685 -9.55779 -9.00064 -8.61100 -8.31991 -8.24855 -8.21267 -7.97068 -7.70831 -5.85865 -3.83280 1.48009 1.70691 1.71382 2.08919 2.42779 3.12621 3.41454 3.45490 3.48816 4.11965 4.57962 4.71205 5.12359 5.17489 5.20869 5.23503 5.27341 5.33464 5.40173 5.46271 5.51867 5.64147 5.73437 5.82818 5.84749 5.87574 5.96541 6.04664 6.12111 6.16028 6.26326 6.31897 6.36314 6.40833 6.49922 6.77026 6.77776 6.80305 6.88080 6.96094 7.03172 7.33829 7.57096 7.69702 7.99493 8.07287 8.17614 8.59949 9.22453 9.77783 11.26161 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008979 B = 0.006410 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.604232 B = 4366.997085 C = 6418.471148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.148 3.852 4 H 0.046 0.954 5 N -0.652 5.652 6 C 0.132 3.868 7 H 0.074 0.926 8 C 0.043 3.957 9 C -0.487 4.487 10 H 0.064 0.936 11 C 0.052 3.948 12 N -0.903 5.903 13 Si 0.883 3.117 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.278 1.278 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.104 4.104 24 C -0.124 4.124 25 C -0.227 4.227 26 S 0.061 5.939 27 C -0.145 4.145 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.336 0.664 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.257 0.743 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.155 0.845 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -8.389 -13.301 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.035 3.965 4 H 0.064 0.936 5 N -0.284 5.284 6 C 0.022 3.978 7 H 0.092 0.908 8 C 0.005 3.995 9 C -0.525 4.525 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.544 5.544 13 Si 0.712 3.288 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.204 1.204 17 C -0.092 4.092 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.155 4.155 25 C -0.362 4.362 26 S 0.324 5.676 27 C -0.280 4.280 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.173 0.827 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.959 -8.457 -12.185 14.961 hybrid contribution -1.241 0.414 -0.685 1.477 sum -3.200 -8.043 -12.870 15.510 Atomic orbital electron populations 1.21845 0.95957 1.01434 1.01917 1.21683 0.95382 0.96206 1.02570 1.20062 0.89781 0.94090 0.92569 0.93566 1.60669 1.39658 1.03491 1.24598 1.20975 0.89252 0.87304 1.00269 0.90775 1.19071 0.97634 0.94348 0.88407 1.21130 0.97042 1.31043 1.03306 0.91818 1.24969 0.96719 0.95818 0.97203 1.69957 1.34572 1.36235 1.13635 0.86790 0.85780 0.78312 0.77930 1.20394 1.21693 1.20360 1.21201 0.97990 0.95612 0.94397 1.20958 0.92125 1.00591 0.99586 1.21053 0.97256 0.98647 0.96820 1.20994 0.98014 0.98831 0.97633 1.21065 0.92841 1.00007 1.00088 1.21099 0.97346 0.98468 0.96719 1.18811 0.96544 1.04106 0.92166 1.20019 0.93602 1.03303 0.98597 1.25351 0.98690 1.12200 0.99973 1.84239 1.09872 1.70536 1.02953 1.25511 0.92956 1.05933 1.03647 0.93000 0.92764 0.92376 0.91764 0.90996 0.84287 0.96499 0.96423 0.93340 0.86287 0.86690 0.86888 0.86789 0.86489 0.85171 0.82701 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 37.16 0.36 -1.37 16 2 C -0.12 -1.50 5.48 -26.73 -0.15 -1.65 16 3 C 0.15 2.20 2.13 -68.87 -0.15 2.05 16 4 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 5 N -0.65 -11.31 5.30 -102.17 -0.54 -11.85 16 6 C 0.13 2.57 2.00 -68.86 -0.14 2.43 16 7 H 0.07 1.54 7.51 -51.93 -0.39 1.15 16 8 C 0.04 1.06 4.55 -27.88 -0.13 0.93 16 9 C -0.49 -13.25 8.84 -34.44 -0.30 -13.55 16 10 H 0.06 1.71 7.01 -52.48 -0.37 1.34 16 11 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 12 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 13 Si 0.88 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.09 -1.55 4.44 -104.62 -0.46 -2.01 16 18 C -0.11 -1.80 8.59 -39.58 -0.34 -2.14 16 19 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 20 C -0.14 -1.81 10.05 -39.58 -0.40 -2.20 16 21 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.12 -1.87 9.67 -39.58 -0.38 -2.25 16 23 C -0.10 -1.65 4.59 -106.25 -0.49 -2.14 16 24 C -0.12 -1.77 9.95 -41.21 -0.41 -2.18 16 25 C -0.23 -3.12 11.23 29.04 0.33 -2.80 16 26 S 0.06 0.93 23.34 -107.50 -2.51 -1.57 16 27 C -0.14 -2.46 9.80 29.04 0.28 -2.17 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.69 5.87 -51.92 -0.30 0.38 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.34 5.49 4.53 -39.29 -0.18 5.32 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.12 1.85 6.79 -52.48 -0.36 1.49 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.77 7.98 -52.48 -0.42 1.36 16 42 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.17 3.15 8.03 -52.48 -0.42 2.73 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -29.75 372.07 -11.60 -41.35 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.61 Total: 7.69 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -3.26 Total: -31.81 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.19 Total: -38.26 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.75 -11.60 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296890519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.221 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds