Wall clock time and date at job start Tue Mar 31 2020 11:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 H 1.09003 * 109.46974 * 305.93252 * 3 2 1 5 5 N 1.46901 * 109.47283 * 65.92636 * 3 2 1 6 6 C 1.46895 * 111.00290 * 206.64256 * 5 3 2 7 7 H 1.08995 * 109.47237 * 321.95670 * 6 5 3 8 8 C 1.53001 * 109.47250 * 201.95093 * 6 5 3 9 9 C 1.50703 * 109.46979 * 65.00075 * 8 6 5 10 10 H 1.08007 * 119.99706 * 359.97438 * 9 8 6 11 11 C 1.37878 * 120.00241 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99816 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00153 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46875 * 60.00481 * 13 11 9 15 15 H 1.48498 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47317 * 300.00604 * 13 11 9 17 17 C 1.50705 * 109.47153 * 81.95117 * 6 5 3 18 18 C 1.38234 * 119.99503 * 47.37173 * 17 6 5 19 19 C 1.38240 * 119.99322 * 179.78588 * 18 17 6 20 20 C 1.38234 * 120.00436 * 0.44267 * 19 18 17 21 21 C 1.38233 * 119.99752 * 359.80942 * 20 19 18 22 22 C 1.38231 * 120.00268 * 227.64112 * 17 6 5 23 23 C 1.50692 * 109.47425 * 185.92857 * 3 2 1 24 24 C 1.38432 * 122.53787 * 99.73430 * 23 3 2 25 25 C 1.33385 * 114.91985 * 179.76304 * 24 23 3 26 26 S 1.75890 * 109.59404 * 0.47652 * 25 24 23 27 27 C 1.33384 * 122.54032 * 280.02611 * 23 3 2 28 28 H 1.09002 * 109.46842 * 63.36795 * 1 2 3 29 29 H 1.08991 * 109.47006 * 183.37395 * 1 2 3 30 30 H 1.09007 * 109.46963 * 303.37683 * 1 2 3 31 31 H 1.08994 * 109.47211 * 239.99631 * 2 1 3 32 32 H 1.09002 * 109.46795 * 119.99980 * 2 1 3 33 33 H 1.00908 * 111.00093 * 330.60288 * 5 3 2 34 34 H 1.08999 * 109.47491 * 184.99966 * 8 6 5 35 35 H 1.08993 * 109.47164 * 305.00411 * 8 6 5 36 36 H 0.96998 * 119.99992 * 180.02562 * 12 11 9 37 37 H 1.08004 * 120.00632 * 359.97438 * 18 17 6 38 38 H 1.08001 * 119.99659 * 180.27201 * 19 18 17 39 39 H 1.08002 * 120.00296 * 179.83285 * 20 19 18 40 40 H 1.07993 * 120.00368 * 180.02562 * 21 20 19 41 41 H 1.08006 * 119.99713 * 359.97438 * 22 17 6 42 42 H 1.08002 * 122.53800 * 359.97438 * 24 23 3 43 43 H 1.08000 * 125.20416 * 180.20924 * 25 24 23 44 44 H 1.08003 * 125.20456 * 359.97438 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5927 1.9861 -0.8321 5 7 1.6708 2.0925 1.2645 6 6 1.5515 3.5467 1.0938 7 1 2.3276 3.8975 0.4137 8 6 1.7133 4.2345 2.4509 9 6 3.1112 4.0069 2.9659 10 1 3.8138 3.4290 2.3836 11 6 3.4933 4.5363 4.1802 12 7 2.6376 5.2395 4.8894 13 14 5.2258 4.2536 4.8189 14 1 6.2061 4.8183 3.8570 15 1 5.3829 4.9213 6.1360 16 1 5.4654 2.7961 4.9715 17 6 0.1965 3.8759 0.5222 18 6 -0.9399 3.3070 1.0663 19 6 -2.1832 3.6124 0.5447 20 6 -2.2893 4.4795 -0.5266 21 6 -1.1525 5.0443 -1.0739 22 6 0.0904 4.7423 -0.5497 23 6 3.5399 1.4450 -0.1467 24 6 4.1692 1.6831 -1.3565 25 6 5.5020 1.6543 -1.3119 26 16 6.0298 1.2973 0.3275 27 6 4.3614 1.2124 0.8780 28 1 -0.3633 0.4607 -0.9187 29 1 -0.3633 -1.0258 0.0605 30 1 -0.3633 0.5654 0.8582 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8186 1.7010 1.6370 34 1 1.5369 5.3043 2.3394 35 1 0.9940 3.8193 3.1567 36 1 2.9065 5.6123 5.7436 37 1 -0.8567 2.6263 1.9007 38 1 -3.0713 3.1714 0.9726 39 1 -3.2605 4.7160 -0.9358 40 1 -1.2354 5.7220 -1.9106 41 1 0.9786 5.1836 -0.9772 42 1 3.6225 1.8807 -2.2668 43 1 6.1569 1.8202 -2.1546 44 1 4.0499 1.0043 1.8910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296890519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:44 Heat of formation + Delta-G solvation = 35.608267 kcal Electronic energy + Delta-G solvation = -24434.406508 eV Core-core repulsion = 21249.095228 eV Total energy + Delta-G solvation = -3185.311280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.76614 -39.42166 -37.13596 -35.37448 -34.03988 -31.75659 -31.30675 -30.40471 -29.92157 -27.16400 -26.07160 -24.07832 -23.76284 -23.19451 -21.62777 -21.08184 -19.37418 -18.66457 -18.36570 -17.67704 -16.71357 -16.55022 -16.22488 -15.84798 -15.64398 -15.34756 -14.54960 -14.44043 -14.36155 -14.13257 -14.05983 -13.85093 -13.63219 -13.53656 -13.39831 -13.01344 -12.93959 -12.75556 -12.59667 -12.32540 -12.23878 -12.19736 -11.85646 -11.69322 -11.67796 -11.55233 -11.28747 -11.08148 -10.46695 -9.75623 -9.52839 -9.51027 -9.18867 -9.07402 -8.07487 -6.10674 0.28744 0.53737 0.56198 0.90618 1.23043 1.39570 1.41186 1.48381 1.93921 2.46836 2.95583 3.24820 3.43002 3.97493 3.99561 4.10353 4.17910 4.21579 4.27627 4.33098 4.34683 4.53828 4.55152 4.59224 4.71312 4.78617 4.82068 4.91239 4.94724 5.06376 5.11896 5.19099 5.21202 5.23784 5.26774 5.45326 5.52171 5.59053 5.64429 5.65117 5.67197 5.71547 5.85430 5.92909 6.19446 6.36634 6.51389 6.73707 7.03470 7.54264 9.04685 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008979 B = 0.006410 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.604232 B = 4366.997085 C = 6418.471148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.153 3.847 4 H 0.047 0.953 5 N -0.663 5.663 6 C 0.153 3.847 7 H 0.056 0.944 8 C 0.053 3.947 9 C -0.489 4.489 10 H 0.065 0.935 11 C -0.002 4.002 12 N -0.940 5.940 13 Si 0.943 3.057 14 H -0.272 1.272 15 H -0.289 1.289 16 H -0.270 1.270 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.211 4.211 26 S 0.052 5.948 27 C -0.178 4.178 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.340 0.660 34 H -0.019 1.019 35 H -0.008 1.008 36 H 0.256 0.744 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.187 0.813 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 -9.051 -15.715 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.040 3.960 4 H 0.065 0.935 5 N -0.295 5.295 6 C 0.043 3.957 7 H 0.075 0.925 8 C 0.016 3.984 9 C -0.527 4.527 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.583 5.583 13 Si 0.769 3.231 14 H -0.197 1.197 15 H -0.215 1.215 16 H -0.195 1.195 17 C -0.114 4.114 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.138 4.138 22 C -0.152 4.152 23 C -0.116 4.116 24 C -0.167 4.167 25 C -0.346 4.346 26 S 0.315 5.685 27 C -0.313 4.313 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.000 1.000 35 H 0.010 0.990 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.171 0.829 43 H 0.204 0.796 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.653 -9.136 -14.612 17.436 hybrid contribution -1.084 0.636 0.006 1.257 sum -3.737 -8.500 -14.606 17.307 Atomic orbital electron populations 1.21795 0.94794 1.02414 1.01580 1.21626 0.96314 0.94349 1.02832 1.20084 0.89482 0.95302 0.91108 0.93522 1.60515 1.40070 1.02439 1.26521 1.20371 0.90647 0.88188 0.96490 0.92531 1.18848 0.95832 0.92583 0.91131 1.21476 0.98077 1.30004 1.03144 0.91670 1.25750 1.00439 0.95838 0.97715 1.70092 1.36511 1.37637 1.14047 0.85831 0.81387 0.78535 0.77338 1.19730 1.21461 1.19507 1.20954 0.96916 0.97582 0.95953 1.20999 0.92796 1.00894 0.99729 1.21376 0.97129 0.98462 0.96815 1.21431 0.99328 0.97349 0.96663 1.21395 0.92008 0.99921 1.00505 1.21221 0.98632 0.98501 0.96826 1.19079 0.96908 1.02957 0.92626 1.20237 0.94030 1.03633 0.98791 1.25744 0.98929 1.10260 0.99673 1.84192 1.08961 1.70878 1.04489 1.25381 0.94329 1.08456 1.03174 0.92717 0.91008 0.93356 0.90325 0.91821 0.83840 1.00029 0.98992 0.93482 0.86975 0.84103 0.83447 0.83971 0.86619 0.82856 0.79566 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.81 71.98 0.71 -2.43 16 2 C -0.11 -2.73 5.48 30.60 0.17 -2.56 16 3 C 0.15 4.53 2.13 44.17 0.09 4.62 16 4 H 0.05 1.40 7.45 -2.39 -0.02 1.38 16 5 N -0.66 -23.80 5.30 -477.16 -2.53 -26.32 16 6 C 0.15 6.23 2.00 44.17 0.09 6.32 16 7 H 0.06 2.46 7.51 -2.39 -0.02 2.44 16 8 C 0.05 2.81 4.55 29.85 0.14 2.95 16 9 C -0.49 -27.65 8.84 25.60 0.23 -27.43 16 10 H 0.07 3.61 7.01 -2.91 -0.02 3.59 16 11 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 12 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 13 Si 0.94 46.19 29.54 68.60 2.03 48.22 16 14 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 17 C -0.11 -3.92 4.44 -19.87 -0.09 -4.01 16 18 C -0.13 -3.96 8.59 22.27 0.19 -3.77 16 19 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 20 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 21 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 22 C -0.13 -4.16 9.67 22.27 0.22 -3.95 16 23 C -0.10 -3.24 4.59 -20.92 -0.10 -3.33 16 24 C -0.14 -3.66 9.95 21.22 0.21 -3.45 16 25 C -0.21 -5.37 11.23 66.72 0.75 -4.62 16 26 S 0.05 1.56 23.34 -56.49 -1.32 0.25 16 27 C -0.18 -6.15 9.80 66.72 0.65 -5.50 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.12 5.87 -2.38 -0.01 1.10 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.34 11.56 4.53 -89.69 -0.41 11.15 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 37 H 0.11 3.59 6.79 -2.91 -0.02 3.57 16 38 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 41 H 0.12 3.53 7.98 -2.91 -0.02 3.50 16 42 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 43 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 44 H 0.15 5.79 8.03 -2.91 -0.02 5.77 16 Total: -1.00 -66.59 372.07 3.42 -63.16 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.57 Total: 28.15 kcal Atomic # 6 Polarization: -59.60 SS G_CDS: 4.39 Total: -55.21 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.24 Total: -84.57 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -1.32 Total: 0.25 kcal Total: -66.59 3.42 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296890519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.772 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds