Wall clock time and date at job start Tue Mar 31 2020 11:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09001 * 109.47340 * 54.91297 * 3 2 1 5 5 N 1.46904 * 109.47056 * 174.90823 * 3 2 1 6 6 C 1.46894 * 111.00076 * 272.88250 * 5 3 2 7 7 H 1.09000 * 109.47260 * 36.74532 * 6 5 3 8 8 C 1.53001 * 109.47065 * 156.74613 * 6 5 3 9 9 C 1.50698 * 109.47343 * 294.99906 * 8 6 5 10 10 H 1.08004 * 119.99395 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00216 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00336 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00131 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47292 * 89.99582 * 13 11 9 15 15 H 1.48503 * 109.47063 * 209.99793 * 13 11 9 16 16 H 1.48498 * 109.46673 * 329.99671 * 13 11 9 17 17 C 1.50704 * 109.47066 * 276.74256 * 6 5 3 18 18 C 1.38235 * 119.99970 * 139.99966 * 17 6 5 19 19 C 1.38228 * 120.00065 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00042 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99751 * 319.91655 * 17 6 5 23 23 C 1.50700 * 109.47544 * 294.90898 * 3 2 1 24 24 C 1.38426 * 122.53921 * 99.73384 * 23 3 2 25 25 C 1.33384 * 114.92270 * 179.76508 * 24 23 3 26 26 S 1.75892 * 109.59072 * 0.47874 * 25 24 23 27 27 C 1.33382 * 122.54096 * 280.03064 * 23 3 2 28 28 H 1.09001 * 109.46654 * 300.98564 * 1 2 3 29 29 H 1.09002 * 109.46950 * 60.98396 * 1 2 3 30 30 H 1.08995 * 109.46725 * 180.97976 * 1 2 3 31 31 H 1.08995 * 109.47221 * 240.00388 * 2 1 3 32 32 H 1.08996 * 109.46967 * 119.99884 * 2 1 3 33 33 H 1.00901 * 110.99921 * 148.91818 * 5 3 2 34 34 H 1.09010 * 109.47128 * 54.99975 * 8 6 5 35 35 H 1.09001 * 109.47175 * 174.99617 * 8 6 5 36 36 H 0.97000 * 120.00316 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.99671 * 0.25970 * 18 17 6 38 38 H 1.07998 * 120.00039 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.00498 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00492 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.00479 * 0.08494 * 22 17 6 42 42 H 1.08002 * 122.53790 * 0.02562 * 24 23 3 43 43 H 1.08002 * 125.20647 * 180.21007 * 25 24 23 44 44 H 1.08007 * 125.20273 * 359.97438 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8409 5 7 3.5039 1.4444 0.1229 6 6 3.9138 1.4166 1.5332 7 1 3.2263 0.7880 2.0992 8 6 5.3305 0.8490 1.6415 9 6 5.3299 -0.5913 1.1981 10 1 4.4108 -1.0554 0.8722 11 6 6.5025 -1.3163 1.2086 12 7 6.5019 -2.5734 0.8222 13 14 8.0920 -0.5136 1.7731 14 1 8.2510 -0.7058 3.2370 15 1 9.2395 -1.1355 1.0647 16 1 8.0492 0.9387 1.4663 17 6 3.8896 2.8164 2.0910 18 6 3.4215 3.0420 3.3720 19 6 3.3998 4.3258 3.8839 20 6 3.8466 5.3841 3.1150 21 6 4.3156 5.1585 1.8343 22 6 4.3370 3.8746 1.3223 23 6 1.6433 2.1157 -1.2886 24 6 0.5519 2.9621 -1.3812 25 6 0.3424 3.4787 -2.5930 26 16 1.5614 2.8772 -3.7093 27 6 2.3138 1.9365 -2.4277 28 1 -0.3633 0.5291 0.8810 29 1 -0.3633 0.4985 -0.8987 30 1 -0.3632 -1.0275 0.0176 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9059 2.2369 -0.3551 34 1 6.0023 1.4249 1.0048 35 1 5.6686 0.9106 2.6759 36 1 7.3268 -3.0836 0.8299 37 1 3.0772 2.2145 3.9746 38 1 3.0337 4.5021 4.8845 39 1 3.8292 6.3873 3.5146 40 1 4.6643 5.9854 1.2334 41 1 4.7026 3.6985 0.3215 42 1 -0.0796 3.1904 -0.5353 43 1 -0.4563 4.1585 -2.8505 44 1 3.1857 1.3100 -2.5450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296890524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:50 Heat of formation + Delta-G solvation = 53.435380 kcal Electronic energy + Delta-G solvation = -24157.067043 eV Core-core repulsion = 20972.528804 eV Total energy + Delta-G solvation = -3184.538239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.61870 -38.54511 -35.92782 -33.55880 -32.29123 -30.83044 -30.39011 -29.39769 -28.73096 -25.68316 -24.26390 -23.44879 -22.26690 -21.69063 -20.62702 -19.51678 -18.41601 -17.60955 -17.03633 -16.33434 -15.63467 -14.98442 -14.86572 -14.44954 -14.25556 -14.07002 -13.73770 -13.25633 -13.15398 -13.00618 -12.68558 -12.54012 -12.51238 -12.41568 -12.25379 -11.93182 -11.50130 -11.27132 -11.15525 -10.99083 -10.93244 -10.73726 -10.66693 -10.43109 -10.08496 -10.01943 -9.65379 -9.05689 -8.71846 -8.68072 -8.42429 -8.37036 -8.25993 -7.76973 -5.90970 -3.85081 1.12957 1.59919 1.60875 1.76745 2.09081 2.81952 3.36508 3.44566 3.48283 4.01661 4.55013 4.59744 4.99299 5.08260 5.10037 5.18437 5.21552 5.34568 5.42644 5.46508 5.50572 5.53593 5.68444 5.73534 5.75769 5.83839 5.88664 5.99536 6.08616 6.14906 6.22139 6.26783 6.33912 6.46391 6.57220 6.58462 6.63366 6.68051 6.69237 6.83436 6.88292 7.14467 7.22537 7.30028 7.76439 7.88639 8.02764 8.70593 9.20524 9.72115 11.22671 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.005333 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.851639 B = 5248.738716 C = 6783.189564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.150 3.850 4 H 0.046 0.954 5 N -0.652 5.652 6 C 0.139 3.861 7 H 0.082 0.918 8 C 0.004 3.996 9 C -0.488 4.488 10 H 0.080 0.920 11 C 0.064 3.936 12 N -0.907 5.907 13 Si 0.870 3.130 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.268 1.268 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.103 4.103 24 C -0.121 4.121 25 C -0.221 4.221 26 S 0.072 5.928 27 C -0.183 4.183 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.334 0.666 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 14.677 -2.348 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C 0.037 3.963 4 H 0.063 0.937 5 N -0.282 5.282 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.033 4.033 9 C -0.526 4.526 10 H 0.099 0.901 11 C -0.136 4.136 12 N -0.547 5.547 13 Si 0.698 3.302 14 H -0.206 1.206 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.098 4.098 18 C -0.135 4.135 19 C -0.139 4.139 20 C -0.153 4.153 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.152 4.152 25 C -0.357 4.357 26 S 0.335 5.665 27 C -0.319 4.319 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.559 14.060 -4.040 18.645 hybrid contribution 0.514 1.142 2.062 2.412 sum -11.045 15.202 -1.978 18.895 Atomic orbital electron populations 1.21787 0.96691 1.01169 1.01077 1.21499 0.93909 0.95277 1.03728 1.20212 0.89343 0.95222 0.91480 0.93654 1.60709 1.05951 1.48428 1.13119 1.20759 1.00536 0.88608 0.87164 0.89995 1.19576 0.90134 0.97573 0.96043 1.20992 0.96518 0.93197 1.41921 0.90147 1.24962 0.98478 0.94698 0.95463 1.69902 1.27296 1.08290 1.49233 0.86942 0.84225 0.80174 0.78843 1.20647 1.21655 1.19283 1.21217 0.95992 0.97913 0.94666 1.21104 1.00160 0.96775 0.95461 1.21091 1.00329 0.93046 0.99450 1.21021 1.00844 0.98609 0.94863 1.21058 1.00075 0.96732 0.95834 1.20966 1.00065 0.92503 1.00101 1.19075 0.96360 0.99565 0.96479 1.20080 0.98708 0.98725 0.97693 1.25467 1.04969 1.08238 0.96983 1.84216 1.24226 1.43693 1.14408 1.25606 1.05750 1.05801 0.94729 0.93422 0.93025 0.92951 0.91155 0.90905 0.84511 0.96475 0.96874 0.93082 0.86125 0.86595 0.86768 0.86634 0.86317 0.84766 0.82379 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.65 37.16 0.36 -1.56 16 2 C -0.11 -1.65 5.64 -26.73 -0.15 -1.81 16 3 C 0.15 2.26 2.18 -68.86 -0.15 2.11 16 4 H 0.05 0.69 7.50 -51.93 -0.39 0.30 16 5 N -0.65 -11.35 5.42 -102.17 -0.55 -11.90 16 6 C 0.14 2.60 1.98 -68.86 -0.14 2.47 16 7 H 0.08 1.58 7.12 -51.93 -0.37 1.21 16 8 C 0.00 0.10 3.70 -27.88 -0.10 0.00 16 9 C -0.49 -13.36 9.39 -34.44 -0.32 -13.69 16 10 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 11 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 12 N -0.91 -27.83 13.96 55.43 0.77 -27.06 16 13 Si 0.87 21.84 27.47 -169.99 -4.67 17.18 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 17 C -0.10 -1.58 4.53 -104.62 -0.47 -2.06 16 18 C -0.12 -1.75 9.67 -39.59 -0.38 -2.13 16 19 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 20 C -0.14 -1.72 10.05 -39.58 -0.40 -2.11 16 21 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 22 C -0.12 -1.81 9.14 -39.58 -0.36 -2.18 16 23 C -0.10 -1.40 3.85 -106.25 -0.41 -1.81 16 24 C -0.12 -1.45 9.18 -41.21 -0.38 -1.83 16 25 C -0.22 -2.42 11.23 29.04 0.33 -2.09 16 26 S 0.07 0.82 23.34 -107.50 -2.51 -1.69 16 27 C -0.18 -2.50 10.19 29.04 0.30 -2.20 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.64 6.86 -51.93 -0.36 0.29 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 33 H 0.33 5.57 5.63 -39.29 -0.22 5.35 16 34 H 0.02 0.41 7.20 -51.92 -0.37 0.03 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.12 1.69 8.04 -52.49 -0.42 1.27 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.78 6.51 -52.49 -0.34 1.44 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.17 2.52 8.03 -52.48 -0.42 2.10 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -29.98 369.85 -11.21 -41.19 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.65 Total: 7.86 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -3.18 Total: -31.16 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.22 Total: -38.96 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.98 -11.21 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296890524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.623 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds