Wall clock time and date at job start Tue Mar 31 2020 11:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.09001 * 109.47340 * 54.91297 * 3 2 1 5 5 N 1.46904 * 109.47056 * 174.90823 * 3 2 1 6 6 C 1.46894 * 111.00076 * 272.88250 * 5 3 2 7 7 H 1.09000 * 109.47260 * 36.74532 * 6 5 3 8 8 C 1.53001 * 109.47065 * 156.74613 * 6 5 3 9 9 C 1.50698 * 109.47343 * 294.99906 * 8 6 5 10 10 H 1.08004 * 119.99395 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00216 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00336 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00131 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47292 * 89.99582 * 13 11 9 15 15 H 1.48503 * 109.47063 * 209.99793 * 13 11 9 16 16 H 1.48498 * 109.46673 * 329.99671 * 13 11 9 17 17 C 1.50704 * 109.47066 * 276.74256 * 6 5 3 18 18 C 1.38235 * 119.99970 * 139.99966 * 17 6 5 19 19 C 1.38228 * 120.00065 * 179.97438 * 18 17 6 20 20 C 1.38235 * 120.00080 * 359.97438 * 19 18 17 21 21 C 1.38235 * 120.00042 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99751 * 319.91655 * 17 6 5 23 23 C 1.50700 * 109.47544 * 294.90898 * 3 2 1 24 24 C 1.38426 * 122.53921 * 99.73384 * 23 3 2 25 25 C 1.33384 * 114.92270 * 179.76508 * 24 23 3 26 26 S 1.75892 * 109.59072 * 0.47874 * 25 24 23 27 27 C 1.33382 * 122.54096 * 280.03064 * 23 3 2 28 28 H 1.09001 * 109.46654 * 300.98564 * 1 2 3 29 29 H 1.09002 * 109.46950 * 60.98396 * 1 2 3 30 30 H 1.08995 * 109.46725 * 180.97976 * 1 2 3 31 31 H 1.08995 * 109.47221 * 240.00388 * 2 1 3 32 32 H 1.08996 * 109.46967 * 119.99884 * 2 1 3 33 33 H 1.00901 * 110.99921 * 148.91818 * 5 3 2 34 34 H 1.09010 * 109.47128 * 54.99975 * 8 6 5 35 35 H 1.09001 * 109.47175 * 174.99617 * 8 6 5 36 36 H 0.97000 * 120.00316 * 180.02562 * 12 11 9 37 37 H 1.07997 * 119.99671 * 0.25970 * 18 17 6 38 38 H 1.07998 * 120.00039 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.00498 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00492 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.00479 * 0.08494 * 22 17 6 42 42 H 1.08002 * 122.53790 * 0.02562 * 24 23 3 43 43 H 1.08002 * 125.20647 * 180.21007 * 25 24 23 44 44 H 1.08007 * 125.20273 * 359.97438 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9820 0.8409 5 7 3.5039 1.4444 0.1229 6 6 3.9138 1.4166 1.5332 7 1 3.2263 0.7880 2.0992 8 6 5.3305 0.8490 1.6415 9 6 5.3299 -0.5913 1.1981 10 1 4.4108 -1.0554 0.8722 11 6 6.5025 -1.3163 1.2086 12 7 6.5019 -2.5734 0.8222 13 14 8.0920 -0.5136 1.7731 14 1 8.2510 -0.7058 3.2370 15 1 9.2395 -1.1355 1.0647 16 1 8.0492 0.9387 1.4663 17 6 3.8896 2.8164 2.0910 18 6 3.4215 3.0420 3.3720 19 6 3.3998 4.3258 3.8839 20 6 3.8466 5.3841 3.1150 21 6 4.3156 5.1585 1.8343 22 6 4.3370 3.8746 1.3223 23 6 1.6433 2.1157 -1.2886 24 6 0.5519 2.9621 -1.3812 25 6 0.3424 3.4787 -2.5930 26 16 1.5614 2.8772 -3.7093 27 6 2.3138 1.9365 -2.4277 28 1 -0.3633 0.5291 0.8810 29 1 -0.3633 0.4985 -0.8987 30 1 -0.3632 -1.0275 0.0176 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9059 2.2369 -0.3551 34 1 6.0023 1.4249 1.0048 35 1 5.6686 0.9106 2.6759 36 1 7.3268 -3.0836 0.8299 37 1 3.0772 2.2145 3.9746 38 1 3.0337 4.5021 4.8845 39 1 3.8292 6.3873 3.5146 40 1 4.6643 5.9854 1.2334 41 1 4.7026 3.6985 0.3215 42 1 -0.0796 3.1904 -0.5353 43 1 -0.4563 4.1585 -2.8505 44 1 3.1857 1.3100 -2.5450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296890524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:49 Heat of formation + Delta-G solvation = 38.163258 kcal Electronic energy + Delta-G solvation = -24157.729292 eV Core-core repulsion = 20972.528804 eV Total energy + Delta-G solvation = -3185.200487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.81927 -39.60631 -37.20253 -35.10090 -34.14171 -31.98857 -31.54968 -30.91324 -29.97249 -27.04904 -25.71429 -24.55803 -23.50856 -23.13483 -21.86446 -20.87505 -19.49323 -18.95980 -18.55308 -17.73657 -16.86178 -16.30681 -16.06936 -16.00699 -15.63171 -15.22972 -15.00338 -14.81787 -14.39263 -14.19392 -14.08655 -13.92532 -13.70007 -13.60288 -13.43091 -13.13860 -12.91817 -12.87225 -12.48440 -12.32972 -12.20255 -12.12723 -11.91117 -11.84579 -11.63385 -11.55111 -11.33245 -11.16587 -10.67069 -9.79519 -9.65568 -9.55257 -9.23926 -9.13066 -8.16376 -6.14370 0.15814 0.49326 0.52996 0.81733 1.13169 1.35218 1.37301 1.48013 1.81769 2.41686 2.91770 3.15776 3.34167 3.83759 3.94750 4.03248 4.18649 4.21969 4.28279 4.31226 4.34349 4.47312 4.52219 4.61030 4.65349 4.68315 4.74840 4.81303 4.88852 5.00033 5.11475 5.12940 5.17381 5.19929 5.23041 5.32285 5.40442 5.46712 5.51315 5.59997 5.60280 5.63803 5.75238 5.76636 6.16150 6.34316 6.50179 6.66488 6.93372 7.45905 9.00537 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009397 B = 0.005333 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.851639 B = 5248.738716 C = 6783.189564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C 0.159 3.841 4 H 0.048 0.952 5 N -0.668 5.668 6 C 0.152 3.848 7 H 0.066 0.934 8 C 0.011 3.989 9 C -0.482 4.482 10 H 0.043 0.957 11 C 0.002 3.998 12 N -0.955 5.955 13 Si 0.937 3.063 14 H -0.271 1.271 15 H -0.289 1.289 16 H -0.255 1.255 17 C -0.115 4.115 18 C -0.130 4.130 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.103 4.103 24 C -0.135 4.135 25 C -0.206 4.206 26 S 0.098 5.902 27 C -0.210 4.210 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.337 0.663 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.260 0.740 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.190 0.810 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.009 18.536 -1.755 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.047 3.953 4 H 0.066 0.934 5 N -0.299 5.299 6 C 0.041 3.959 7 H 0.084 0.916 8 C -0.027 4.027 9 C -0.521 4.521 10 H 0.061 0.939 11 C -0.193 4.193 12 N -0.598 5.598 13 Si 0.762 3.238 14 H -0.197 1.197 15 H -0.215 1.215 16 H -0.179 1.179 17 C -0.117 4.117 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.116 4.116 24 C -0.165 4.165 25 C -0.341 4.341 26 S 0.362 5.638 27 C -0.346 4.346 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.158 0.842 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.131 0.869 42 H 0.167 0.833 43 H 0.207 0.793 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.541 17.939 -3.446 22.158 hybrid contribution 0.735 -0.045 1.835 1.977 sum -11.807 17.895 -1.611 21.499 Atomic orbital electron populations 1.21692 0.93969 1.01831 1.02132 1.21437 0.96262 0.95478 1.00982 1.20072 0.87746 0.94737 0.92757 0.93375 1.60598 1.07829 1.48916 1.12599 1.20321 0.97297 0.90232 0.88002 0.91613 1.19450 0.93226 0.94794 0.95256 1.21224 0.94996 0.95347 1.40521 0.93903 1.25817 1.02308 0.95186 0.95981 1.70063 1.28267 1.10049 1.51388 0.85865 0.79597 0.79709 0.78630 1.19684 1.21513 1.17869 1.20914 0.98552 0.96461 0.95747 1.21245 1.00571 0.98134 0.94952 1.21421 0.99449 0.92100 1.00714 1.21451 0.98925 1.00029 0.94213 1.21368 0.99446 0.96374 0.96586 1.21030 1.00615 0.93304 0.99978 1.19000 0.97201 0.99993 0.95366 1.20145 0.98538 0.98945 0.98873 1.25861 1.04784 1.07392 0.96083 1.84113 1.23868 1.42590 1.13270 1.25536 1.05950 1.06868 0.96249 0.92035 0.92095 0.92563 0.93608 0.93900 0.84158 0.96943 0.97022 0.93114 0.86097 0.83800 0.83429 0.84187 0.86869 0.83271 0.79260 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.65 71.99 0.69 -2.87 16 2 C -0.10 -3.46 5.64 30.60 0.17 -3.28 16 3 C 0.16 4.98 2.18 44.17 0.10 5.07 16 4 H 0.05 1.48 7.50 -2.39 -0.02 1.47 16 5 N -0.67 -24.64 5.42 -477.15 -2.59 -27.22 16 6 C 0.15 5.92 1.98 44.17 0.09 6.01 16 7 H 0.07 2.72 7.12 -2.39 -0.02 2.70 16 8 C 0.01 0.50 3.70 29.85 0.11 0.61 16 9 C -0.48 -27.81 9.39 25.60 0.24 -27.57 16 10 H 0.04 2.73 7.99 -2.91 -0.02 2.71 16 11 C 0.00 0.13 5.47 84.65 0.46 0.59 16 12 N -0.95 -61.18 13.96 21.44 0.30 -60.88 16 13 Si 0.94 45.97 27.47 68.60 1.88 47.86 16 14 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 17 C -0.11 -3.76 4.53 -19.86 -0.09 -3.85 16 18 C -0.13 -3.77 9.67 22.27 0.22 -3.56 16 19 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 20 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 21 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 22 C -0.13 -3.88 9.14 22.27 0.20 -3.68 16 23 C -0.10 -2.80 3.85 -20.92 -0.08 -2.88 16 24 C -0.13 -2.96 9.18 21.22 0.19 -2.77 16 25 C -0.21 -3.89 11.23 66.72 0.75 -3.14 16 26 S 0.10 2.12 23.34 -56.49 -1.32 0.80 16 27 C -0.21 -5.87 10.19 66.72 0.68 -5.19 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.46 6.86 -2.39 -0.02 1.45 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.04 1.66 7.52 -2.39 -0.02 1.64 16 33 H 0.34 11.79 5.63 -89.69 -0.50 11.28 16 34 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 35 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.12 3.37 8.04 -2.91 -0.02 3.35 16 38 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.11 3.39 6.51 -2.91 -0.02 3.37 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.15 4.83 8.03 -2.91 -0.02 4.80 16 Total: -1.00 -67.78 369.85 3.11 -64.67 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.42 Total: 28.95 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 4.41 Total: -54.18 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -2.29 Total: -88.10 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.86 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.80 kcal Total: -67.78 3.11 -64.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296890524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.833 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds