Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35359 * 120.29055 * 2 1 4 4 N 1.36468 * 119.34967 * 180.29247 * 3 2 1 5 5 H 0.96997 * 120.02143 * 179.72414 * 4 3 2 6 6 C 1.37577 * 119.94793 * 359.47732 * 4 3 2 7 7 N 1.31516 * 119.70694 * 180.25445 * 6 4 3 8 8 C 1.46501 * 120.00141 * 180.27627 * 7 6 4 9 9 C 1.53003 * 109.47349 * 119.99711 * 8 7 6 10 10 C 1.52999 * 109.47137 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47062 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00267 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00108 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00055 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99915 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47300 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47038 * 120.00324 * 15 13 11 18 18 H 1.48504 * 109.46768 * 239.99791 * 15 13 11 19 19 N 1.34078 * 120.58741 * 0.53159 * 6 4 3 20 20 C 1.32360 * 120.66562 * 359.72181 * 19 6 4 21 21 C 1.47992 * 119.98407 * 180.02562 * 20 19 6 22 22 C 1.39548 * 120.15116 * 230.19715 * 21 20 19 23 23 C 1.37904 * 119.88448 * 180.02562 * 22 21 20 24 24 C 1.38435 * 120.20397 * 0.02676 * 23 22 21 25 25 C 1.38225 * 120.31442 * 359.97195 * 24 23 22 26 26 C 1.38303 * 120.11063 * 359.72859 * 25 24 23 27 27 F 1.35100 * 120.10557 * 180.29958 * 26 25 24 28 28 H 1.09004 * 109.46998 * 94.99383 * 1 2 3 29 29 H 1.08997 * 109.46985 * 214.99600 * 1 2 3 30 30 H 1.08997 * 109.47466 * 334.99737 * 1 2 3 31 31 H 1.08000 * 120.32672 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46910 * 239.99948 * 8 7 6 33 33 H 1.09004 * 109.46861 * 359.97438 * 8 7 6 34 34 H 1.08999 * 109.47100 * 300.00438 * 9 8 7 35 35 H 1.08999 * 109.46450 * 59.99708 * 9 8 7 36 36 H 1.08995 * 109.47254 * 300.00317 * 10 9 8 37 37 H 1.09004 * 109.46730 * 60.00088 * 10 9 8 38 38 H 0.96999 * 119.99918 * 179.97438 * 14 13 11 39 39 H 1.07997 * 120.06383 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.89708 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.84409 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.94636 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1897 1.1688 0.0000 4 7 3.5542 1.1464 -0.0061 5 1 4.0532 1.9781 -0.0102 6 6 4.2213 -0.0568 -0.0012 7 7 5.5364 -0.0728 -0.0021 8 6 6.2534 -1.3504 -0.0030 9 6 7.1312 -1.4416 -1.2529 10 6 7.8805 -2.7756 -1.2536 11 6 8.7455 -2.8652 -2.4842 12 1 8.7598 -2.0519 -3.1947 13 6 9.5187 -3.9856 -2.7033 14 7 9.5018 -4.9758 -1.8380 15 14 10.5915 -4.0963 -4.2286 16 1 10.4329 -2.8603 -5.0361 17 1 12.0127 -4.2452 -3.8244 18 1 10.1813 -5.2719 -5.0379 19 7 3.5428 -1.2132 -0.0013 20 6 2.2192 -1.2192 -0.0004 21 6 1.4855 -2.5045 0.0001 22 6 0.4666 -2.7302 -0.9263 23 6 -0.2139 -3.9297 -0.9206 24 6 0.1103 -4.9099 0.0016 25 6 1.1181 -4.6952 0.9229 26 6 1.8132 -3.4995 0.9248 27 9 2.8022 -3.2920 1.8214 28 1 -0.3633 -0.0895 -1.0238 29 1 -0.3633 -0.8418 0.5894 30 1 -0.3634 0.9313 0.4343 31 1 1.6598 2.1099 0.0004 32 1 6.8798 -1.4160 0.8865 33 1 5.5350 -2.1702 -0.0025 34 1 6.5047 -1.3759 -2.1424 35 1 7.8495 -0.6218 -1.2530 36 1 8.5070 -2.8409 -0.3640 37 1 7.1624 -3.5956 -1.2532 38 1 10.0455 -5.7641 -1.9923 39 1 0.2107 -1.9667 -1.6460 40 1 -1.0028 -4.1044 -1.6371 41 1 -0.4267 -5.8469 0.0011 42 1 1.3664 -5.4642 1.6394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338664783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = 37.382256 kcal Electronic energy + Delta-G solvation = -25195.716392 eV Core-core repulsion = 21476.561612 eV Total energy + Delta-G solvation = -3719.154779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.87332 -41.00208 -39.04942 -35.89747 -35.01667 -33.82534 -32.42468 -31.14497 -30.80057 -30.40788 -27.26603 -25.60285 -25.27248 -23.36511 -22.89622 -22.07785 -21.19522 -19.79436 -18.10898 -17.88970 -17.71450 -16.80795 -16.35720 -16.09193 -15.58133 -15.22111 -15.08808 -14.59595 -14.40048 -14.27403 -13.89211 -13.67721 -13.36819 -13.18806 -13.08458 -12.74060 -12.31650 -12.30588 -12.10168 -11.90782 -11.51968 -11.32673 -11.23888 -10.79808 -10.71193 -10.44962 -10.11244 -9.99122 -9.57084 -9.26926 -9.18793 -8.92967 -8.84794 -8.74743 -8.22058 -7.28352 -5.87094 -3.88544 0.34722 0.98013 1.06268 1.72857 2.68577 3.29094 3.38706 3.45132 3.50710 3.72437 3.83543 4.08506 4.24697 4.54430 4.56303 4.60598 4.71513 4.75872 4.97407 5.03706 5.15524 5.31523 5.36381 5.44681 5.48023 5.61480 5.74671 5.80120 5.90978 5.93718 6.01438 6.11693 6.20488 6.30538 6.48091 6.60775 6.67172 6.87861 7.01805 7.21572 7.35596 7.84396 7.97481 8.03169 8.15320 8.39336 8.59905 9.18788 9.74194 11.24428 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003342 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.874080 B = 8376.533361 C = 9690.324644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.265 4.265 3 C 0.189 3.811 4 N -0.620 5.620 5 H 0.423 0.577 6 C 0.490 3.510 7 N -0.575 5.575 8 C 0.068 3.932 9 C -0.095 4.095 10 C 0.023 3.977 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 N -0.506 5.506 20 C 0.294 3.706 21 C -0.090 4.090 22 C -0.061 4.061 23 C -0.137 4.137 24 C -0.077 4.077 25 C -0.160 4.160 26 C 0.142 3.858 27 F -0.123 7.123 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.173 0.827 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.258 0.742 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.695 8.836 5.797 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.278 4.278 3 C 0.052 3.948 4 N -0.239 5.239 5 H 0.260 0.740 6 C 0.123 3.877 7 N -0.303 5.303 8 C -0.062 4.062 9 C -0.134 4.134 10 C -0.015 4.015 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 N -0.223 5.223 20 C 0.120 3.880 21 C -0.091 4.091 22 C -0.080 4.080 23 C -0.155 4.155 24 C -0.095 4.095 25 C -0.178 4.178 26 C 0.121 3.879 27 F -0.101 7.101 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.190 0.810 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.843 8.528 5.873 28.771 hybrid contribution 0.300 0.234 -0.657 0.759 sum -26.543 8.762 5.216 28.434 Atomic orbital electron populations 1.20496 0.89088 1.02757 1.02084 1.19738 0.97953 0.91490 1.18586 1.22004 0.82592 0.99735 0.90428 1.42272 1.05361 1.09841 1.66406 0.73982 1.20123 0.91565 0.79692 0.96327 1.72718 1.01339 1.30987 1.25296 1.21966 0.96226 0.88514 0.99458 1.21576 0.97051 1.00512 0.94234 1.19074 0.94650 0.90796 0.96959 1.21311 1.24601 1.02431 1.06943 0.92773 1.25031 0.97105 0.95856 0.96591 1.69992 1.40871 1.07083 1.35668 0.86552 0.80334 0.77894 0.83332 1.19798 1.21036 1.21074 1.69775 1.07600 1.25825 1.19132 1.20050 0.89515 0.91551 0.86876 1.18530 0.98926 0.92648 0.99039 1.21123 0.92907 0.97685 0.96281 1.21110 1.01092 0.93425 0.99884 1.21145 0.95639 0.99232 0.93489 1.21160 0.98086 0.96400 1.02189 1.17761 0.87111 0.93856 0.89128 1.91578 1.58621 1.95064 1.64878 0.91574 0.91273 0.91774 0.80995 0.91506 0.92204 0.94186 0.93270 0.96588 0.96640 0.93197 0.84471 0.84846 0.84764 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 8.45 36.00 0.30 -0.18 16 2 C -0.27 -2.50 5.85 -104.53 -0.61 -3.11 16 3 C 0.19 1.51 10.91 -16.52 -0.18 1.33 16 4 N -0.62 -7.14 5.42 -13.83 -0.07 -7.22 16 5 H 0.42 3.89 8.93 -40.82 -0.36 3.52 16 6 C 0.49 8.48 8.42 -323.18 -2.72 5.76 16 7 N -0.58 -11.74 10.67 -62.39 -0.67 -12.41 16 8 C 0.07 1.56 6.33 -4.04 -0.03 1.54 16 9 C -0.10 -2.41 5.48 -26.73 -0.15 -2.56 16 10 C 0.02 0.67 4.97 -27.89 -0.14 0.53 16 11 C -0.51 -15.95 9.11 -34.44 -0.31 -16.26 16 12 H 0.05 1.64 7.74 -52.48 -0.41 1.24 16 13 C 0.05 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.90 -28.66 13.29 55.43 0.74 -27.92 16 15 Si 0.89 22.97 29.54 -169.99 -5.02 17.95 16 16 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 19 N -0.51 -9.00 8.21 -10.39 -0.09 -9.08 16 20 C 0.29 4.00 6.10 -82.52 -0.50 3.50 16 21 C -0.09 -1.09 4.90 -104.85 -0.51 -1.60 16 22 C -0.06 -0.53 8.06 -39.22 -0.32 -0.85 16 23 C -0.14 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.08 -0.59 10.04 -39.51 -0.40 -0.98 16 25 C -0.16 -1.61 10.01 -39.56 -0.40 -2.00 16 26 C 0.14 1.87 7.25 -39.00 -0.28 1.59 16 27 F -0.12 -1.99 16.48 2.25 0.04 -1.95 16 28 H 0.07 0.29 7.26 -51.93 -0.38 -0.09 16 29 H 0.07 0.42 6.87 -51.93 -0.36 0.07 16 30 H 0.06 0.23 8.05 -51.93 -0.42 -0.19 16 31 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.06 1.43 6.65 -51.93 -0.35 1.08 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.14 0.92 6.75 -52.49 -0.35 0.56 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -39.03 359.79 -11.95 -50.98 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.56 Total: -2.66 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -6.74 Total: -13.11 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.09 Total: -56.63 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -39.03 -11.95 -50.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338664783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.363 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds