Wall clock time and date at job start Tue Mar 31 2020 10:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35359 * 120.29055 * 2 1 4 4 N 1.36468 * 119.34967 * 180.29247 * 3 2 1 5 5 H 0.96997 * 120.02143 * 179.72414 * 4 3 2 6 6 C 1.37577 * 119.94793 * 359.47732 * 4 3 2 7 7 N 1.31516 * 119.70694 * 180.25445 * 6 4 3 8 8 C 1.46501 * 120.00141 * 180.27627 * 7 6 4 9 9 C 1.53003 * 109.47349 * 119.99711 * 8 7 6 10 10 C 1.52999 * 109.47137 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47062 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00267 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00108 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00055 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99915 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47300 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47038 * 120.00324 * 15 13 11 18 18 H 1.48504 * 109.46768 * 239.99791 * 15 13 11 19 19 N 1.34078 * 120.58741 * 0.53159 * 6 4 3 20 20 C 1.32360 * 120.66562 * 359.72181 * 19 6 4 21 21 C 1.47992 * 119.98407 * 180.02562 * 20 19 6 22 22 C 1.39548 * 120.15116 * 230.19715 * 21 20 19 23 23 C 1.37904 * 119.88448 * 180.02562 * 22 21 20 24 24 C 1.38435 * 120.20397 * 0.02676 * 23 22 21 25 25 C 1.38225 * 120.31442 * 359.97195 * 24 23 22 26 26 C 1.38303 * 120.11063 * 359.72859 * 25 24 23 27 27 F 1.35100 * 120.10557 * 180.29958 * 26 25 24 28 28 H 1.09004 * 109.46998 * 94.99383 * 1 2 3 29 29 H 1.08997 * 109.46985 * 214.99600 * 1 2 3 30 30 H 1.08997 * 109.47466 * 334.99737 * 1 2 3 31 31 H 1.08000 * 120.32672 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46910 * 239.99948 * 8 7 6 33 33 H 1.09004 * 109.46861 * 359.97438 * 8 7 6 34 34 H 1.08999 * 109.47100 * 300.00438 * 9 8 7 35 35 H 1.08999 * 109.46450 * 59.99708 * 9 8 7 36 36 H 1.08995 * 109.47254 * 300.00317 * 10 9 8 37 37 H 1.09004 * 109.46730 * 60.00088 * 10 9 8 38 38 H 0.96999 * 119.99918 * 179.97438 * 14 13 11 39 39 H 1.07997 * 120.06383 * 359.97438 * 22 21 20 40 40 H 1.07996 * 119.89708 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.84409 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.94636 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1897 1.1688 0.0000 4 7 3.5542 1.1464 -0.0061 5 1 4.0532 1.9781 -0.0102 6 6 4.2213 -0.0568 -0.0012 7 7 5.5364 -0.0728 -0.0021 8 6 6.2534 -1.3504 -0.0030 9 6 7.1312 -1.4416 -1.2529 10 6 7.8805 -2.7756 -1.2536 11 6 8.7455 -2.8652 -2.4842 12 1 8.7598 -2.0519 -3.1947 13 6 9.5187 -3.9856 -2.7033 14 7 9.5018 -4.9758 -1.8380 15 14 10.5915 -4.0963 -4.2286 16 1 10.4329 -2.8603 -5.0361 17 1 12.0127 -4.2452 -3.8244 18 1 10.1813 -5.2719 -5.0379 19 7 3.5428 -1.2132 -0.0013 20 6 2.2192 -1.2192 -0.0004 21 6 1.4855 -2.5045 0.0001 22 6 0.4666 -2.7302 -0.9263 23 6 -0.2139 -3.9297 -0.9206 24 6 0.1103 -4.9099 0.0016 25 6 1.1181 -4.6952 0.9229 26 6 1.8132 -3.4995 0.9248 27 9 2.8022 -3.2920 1.8214 28 1 -0.3633 -0.0895 -1.0238 29 1 -0.3633 -0.8418 0.5894 30 1 -0.3634 0.9313 0.4343 31 1 1.6598 2.1099 0.0004 32 1 6.8798 -1.4160 0.8865 33 1 5.5350 -2.1702 -0.0025 34 1 6.5047 -1.3759 -2.1424 35 1 7.8495 -0.6218 -1.2530 36 1 8.5070 -2.8409 -0.3640 37 1 7.1624 -3.5956 -1.2532 38 1 10.0455 -5.7641 -1.9923 39 1 0.2107 -1.9667 -1.6460 40 1 -1.0028 -4.1044 -1.6371 41 1 -0.4267 -5.8469 0.0011 42 1 1.3664 -5.4642 1.6394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338664783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:49 Heat of formation + Delta-G solvation = 12.468277 kcal Electronic energy + Delta-G solvation = -25196.796743 eV Core-core repulsion = 21476.561612 eV Total energy + Delta-G solvation = -3720.235130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94148 -42.01081 -39.82829 -37.33257 -36.06752 -35.60569 -34.11414 -32.35722 -31.88190 -31.35109 -28.86829 -26.90315 -26.19358 -24.95988 -23.79635 -23.10368 -22.46546 -21.74750 -19.10105 -18.89295 -18.73252 -18.39136 -17.64225 -17.25590 -16.63754 -16.60988 -16.33949 -16.15717 -15.72968 -15.39181 -15.01385 -14.70104 -14.47185 -14.27842 -14.03247 -13.81632 -13.68758 -13.45857 -13.40226 -12.91072 -12.83681 -12.79532 -12.70342 -12.46086 -12.36038 -12.05706 -11.77614 -11.54735 -11.35767 -11.11056 -10.92499 -10.61823 -10.22595 -9.94174 -9.66335 -8.50109 -8.23233 -6.37496 -0.56554 0.22123 0.29394 0.74203 1.34982 1.37767 1.51613 1.67383 2.37693 2.48850 2.68031 2.95520 3.07207 3.25485 3.54925 3.71247 3.83046 4.00781 4.08007 4.17680 4.23711 4.35217 4.36405 4.46044 4.62945 4.65513 4.70312 4.90687 4.97587 5.01082 5.07351 5.08767 5.10710 5.14965 5.25724 5.32659 5.34715 5.42112 5.43199 5.47579 5.64150 5.76525 5.89115 6.02496 6.18812 6.76932 6.90750 7.10734 7.31446 8.88791 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003342 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.874080 B = 8376.533361 C = 9690.324644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.272 4.272 3 C 0.209 3.791 4 N -0.605 5.605 5 H 0.436 0.564 6 C 0.504 3.496 7 N -0.632 5.632 8 C 0.091 3.909 9 C -0.075 4.075 10 C 0.031 3.969 11 C -0.547 4.547 12 H 0.057 0.943 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.976 3.024 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.583 5.583 20 C 0.291 3.709 21 C -0.115 4.115 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.069 4.069 25 C -0.169 4.169 26 C 0.095 3.905 27 F -0.156 7.156 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.030 0.970 35 H 0.047 0.953 36 H -0.009 1.009 37 H -0.016 1.016 38 H 0.266 0.734 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.428 10.392 3.587 34.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.284 4.284 3 C 0.073 3.927 4 N -0.223 5.223 5 H 0.276 0.724 6 C 0.138 3.862 7 N -0.366 5.366 8 C -0.040 4.040 9 C -0.114 4.114 10 C -0.007 4.007 11 C -0.584 4.584 12 H 0.075 0.925 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.198 1.198 19 N -0.304 5.304 20 C 0.124 3.876 21 C -0.117 4.117 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.188 4.188 26 C 0.075 3.925 27 F -0.134 7.134 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.258 0.742 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.010 0.990 37 H 0.003 0.997 38 H 0.075 0.925 39 H 0.180 0.820 40 H 0.192 0.808 41 H 0.187 0.813 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -30.699 10.107 3.674 32.528 hybrid contribution 1.059 -0.264 0.069 1.094 sum -29.640 9.843 3.743 31.455 Atomic orbital electron populations 1.20596 0.85641 1.04221 1.03552 1.20275 1.00272 0.90195 1.17608 1.23157 0.80683 1.02087 0.86793 1.42407 1.07024 1.08640 1.64262 0.72434 1.20345 0.91304 0.81491 0.93108 1.72644 1.03032 1.27927 1.32948 1.21403 0.95392 0.90094 0.97117 1.21285 0.96778 0.97856 0.95433 1.18929 0.93851 0.92054 0.95843 1.21646 1.25844 1.03322 1.07632 0.92472 1.26110 0.98389 0.94956 1.00570 1.70136 1.41590 1.07763 1.37900 0.85253 0.78073 0.78510 0.78296 1.18679 1.19742 1.19771 1.69757 1.10021 1.26427 1.24205 1.20750 0.88752 0.94098 0.83993 1.18811 1.00313 0.92325 1.00271 1.21471 0.91561 0.99096 0.95399 1.21628 1.00859 0.92099 0.99560 1.21617 0.94275 1.00703 0.92066 1.21411 0.98676 0.95455 1.03268 1.18338 0.87938 0.95912 0.90310 1.91486 1.60319 1.95427 1.66203 0.89570 0.91962 0.88629 0.74242 0.93354 0.94535 0.95101 0.93398 0.99048 0.99721 0.92541 0.81980 0.80788 0.81289 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 8.45 71.23 0.60 0.05 16 2 C -0.27 -4.38 5.85 -19.80 -0.12 -4.50 16 3 C 0.21 2.51 10.91 83.31 0.91 3.42 16 4 N -0.60 -13.08 5.42 -197.65 -1.07 -14.15 16 5 H 0.44 7.22 8.93 -92.71 -0.83 6.39 16 6 C 0.50 18.26 8.42 261.61 2.20 20.46 16 7 N -0.63 -27.72 10.67 -351.29 -3.75 -31.47 16 8 C 0.09 4.62 6.33 86.38 0.55 5.17 16 9 C -0.08 -4.11 5.48 30.59 0.17 -3.95 16 10 C 0.03 1.95 4.97 29.85 0.15 2.10 16 11 C -0.55 -35.35 9.11 25.60 0.23 -35.11 16 12 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.93 -61.67 13.29 21.45 0.28 -61.39 16 15 Si 0.98 47.80 29.54 68.60 2.03 49.82 16 16 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 19 N -0.58 -22.15 8.21 -186.78 -1.53 -23.68 16 20 C 0.29 8.04 6.10 42.38 0.26 8.29 16 21 C -0.12 -2.84 4.90 -20.01 -0.10 -2.94 16 22 C -0.06 -0.86 8.06 22.51 0.18 -0.68 16 23 C -0.12 -1.35 10.03 22.24 0.22 -1.12 16 24 C -0.07 -0.89 10.04 22.31 0.22 -0.66 16 25 C -0.17 -3.50 10.01 22.28 0.22 -3.27 16 26 C 0.10 2.71 7.25 22.65 0.16 2.87 16 27 F -0.16 -5.70 16.48 44.97 0.74 -4.96 16 28 H 0.09 0.28 7.26 -2.38 -0.02 0.27 16 29 H 0.06 0.56 6.87 -2.39 -0.02 0.54 16 30 H 0.09 0.10 8.05 -2.39 -0.02 0.08 16 31 H 0.24 -0.39 8.06 -2.91 -0.02 -0.42 16 32 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.96 6.65 -2.38 -0.02 1.95 16 34 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 38 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 39 H 0.16 1.55 6.75 -2.91 -0.02 1.53 16 40 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 41 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -95.98 359.79 3.25 -92.73 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 0.22 Total: 2.68 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.33 Total: -9.58 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -6.07 Total: -130.69 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.74 Total: -4.96 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.82 kcal Total: -95.98 3.25 -92.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338664783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.196 kcal (2) G-P(sol) polarization free energy of solvation -95.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds