Wall clock time and date at job start Tue Mar 31 2020 11:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46982 * 2 1 4 4 H 1.09000 * 109.47164 * 54.99634 * 3 2 1 5 5 C 1.50695 * 109.47184 * 174.99681 * 3 2 1 6 6 H 1.08000 * 120.00078 * 120.00191 * 5 3 2 7 7 C 1.37880 * 120.00311 * 300.00289 * 5 3 2 8 8 N 1.31511 * 119.99648 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00308 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47175 * 59.99274 * 9 7 5 11 11 H 1.48493 * 109.47184 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46549 * 299.99675 * 9 7 5 13 13 N 1.46496 * 109.47129 * 294.99934 * 3 2 1 14 14 C 1.34780 * 120.00060 * 84.99740 * 13 3 2 15 15 O 1.21687 * 119.99928 * 0.02562 * 14 13 3 16 16 C 1.46766 * 119.99821 * 180.02562 * 14 13 3 17 17 C 1.41530 * 126.51093 * 359.97438 * 16 14 13 18 18 N 1.30292 * 108.25958 * 180.02562 * 17 16 14 19 19 N 1.39898 * 109.25309 * 359.97438 * 18 17 16 20 20 C 1.39727 * 125.78045 * 179.97438 * 19 18 17 21 21 C 1.38977 * 119.68831 * 335.02966 * 20 19 18 22 22 C 1.38400 * 119.10226 * 180.25379 * 21 20 19 23 23 C 1.38804 * 118.48852 * 359.52457 * 22 21 20 24 24 C 1.38112 * 119.29850 * 0.43302 * 23 22 21 25 25 N 1.31904 * 120.84343 * 359.81325 * 24 23 22 26 26 C 1.35245 * 108.44646 * 0.25087 * 19 18 17 27 27 N 1.37931 * 126.47301 * 179.75333 * 26 19 18 28 28 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47682 * 299.99852 * 1 2 3 30 30 H 1.08998 * 109.47030 * 60.00600 * 1 2 3 31 31 H 1.08995 * 109.47244 * 240.00006 * 2 1 3 32 32 H 1.08998 * 109.47030 * 119.99400 * 2 1 3 33 33 H 0.97007 * 120.00328 * 180.02562 * 8 7 5 34 34 H 0.96994 * 119.99857 * 265.00170 * 13 3 2 35 35 H 1.08003 * 125.86744 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.44460 * 359.97136 * 21 20 19 37 37 H 1.08004 * 120.75142 * 179.74865 * 22 21 20 38 38 H 1.08002 * 120.35032 * 180.20539 * 23 22 21 39 39 H 1.08007 * 119.57982 * 179.78835 * 24 23 22 40 40 H 0.96998 * 119.99692 * 0.02562 * 27 26 19 41 41 H 0.96995 * 120.00079 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8815 1.3820 10 1 6.4993 2.2817 1.3822 11 1 6.3977 0.2180 2.6511 12 1 6.5974 0.1475 0.2351 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3420 2.6325 -0.4310 16 6 0.0466 3.3200 -2.6213 17 6 0.8365 3.4376 -3.7897 18 7 0.1459 4.0836 -4.6860 19 7 -1.1060 4.4124 -4.1551 20 6 -2.1189 5.1071 -4.8212 21 6 -1.7936 5.9653 -5.8648 22 6 -2.8061 6.6514 -6.5126 23 6 -4.1150 6.4464 -6.0985 24 6 -4.3654 5.5775 -5.0545 25 7 -3.3789 4.9414 -4.4528 26 6 -1.1675 3.9493 -2.8859 27 7 -2.2325 4.0741 -2.0184 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8291 -0.0603 2.9504 34 1 2.2719 2.1232 -1.9977 35 1 1.8393 3.0572 -3.9166 36 1 -0.7642 6.0985 -6.1631 37 1 -2.5831 7.3281 -7.3243 38 1 -4.9287 6.9636 -6.5851 39 1 -5.3818 5.4173 -4.7264 40 1 -3.0390 4.5315 -2.3032 41 1 -2.1750 3.7044 -1.1235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346721480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:28 Heat of formation + Delta-G solvation = 80.914256 kcal Electronic energy + Delta-G solvation = -25622.418071 eV Core-core repulsion = 21925.070943 eV Total energy + Delta-G solvation = -3697.347128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69249 -40.15736 -38.39677 -35.14525 -34.62216 -33.55724 -32.84427 -32.20332 -30.90070 -29.65794 -28.56853 -26.77479 -24.40022 -24.14536 -23.01764 -22.00323 -21.13625 -19.86401 -19.22910 -18.59966 -17.11716 -17.00744 -16.48975 -15.90219 -15.77245 -15.44228 -15.41396 -14.97196 -14.47112 -14.33287 -14.15555 -13.74767 -13.59746 -13.14449 -12.97325 -12.56340 -12.40164 -11.87603 -11.41014 -11.19045 -11.16689 -10.97610 -10.84855 -10.74769 -10.54946 -10.26834 -10.24662 -10.07042 -10.03409 -9.52734 -8.97864 -8.89311 -8.58459 -8.41157 -7.83525 -7.49418 -6.04842 -4.13457 0.46840 0.77254 1.87466 2.09353 2.46331 3.30627 3.34126 3.35698 3.37154 3.78992 3.98560 4.25892 4.28846 4.34256 4.49162 4.56316 4.65011 4.74561 4.99907 5.24053 5.26542 5.32704 5.45527 5.60649 5.73603 5.99083 6.04159 6.49418 6.50591 6.57795 6.67751 6.77878 7.16854 7.23136 7.30985 7.38928 7.48763 7.54476 7.62751 7.72201 7.85807 7.98343 8.02160 8.28281 8.83790 8.90623 9.33478 9.55074 11.00468 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.002864 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.966187 B = 9773.488726 C =10424.287610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.592 3.408 15 O -0.572 6.572 16 C -0.362 4.362 17 C 0.134 3.866 18 N -0.310 5.310 19 N -0.355 5.355 20 C 0.380 3.620 21 C -0.161 4.161 22 C -0.051 4.051 23 C -0.191 4.191 24 C 0.133 3.867 25 N -0.517 5.517 26 C 0.450 3.550 27 N -0.814 5.814 28 H 0.019 0.981 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.197 0.803 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.407 0.593 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 11.538 -16.577 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.379 3.621 15 O -0.455 6.455 16 C -0.382 4.382 17 C -0.056 4.056 18 N -0.128 5.128 19 N -0.138 5.138 20 C 0.152 3.848 21 C -0.183 4.183 22 C -0.078 4.078 23 C -0.212 4.212 24 C -0.025 4.025 25 N -0.232 5.232 26 C 0.218 3.782 27 N -0.362 5.362 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.214 0.786 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.183 0.817 40 H 0.239 0.761 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -14.230 11.289 -16.173 24.321 hybrid contribution 1.165 0.182 0.023 1.179 sum -13.065 11.472 -16.150 23.730 Atomic orbital electron populations 1.21828 0.98408 0.97800 1.01303 1.21926 0.92617 0.99936 1.02110 1.18726 0.93947 0.89065 0.81086 0.93332 1.21226 0.90883 1.38752 1.06174 0.92140 1.24876 0.98430 0.94922 0.95457 1.69890 1.35101 1.37766 1.09331 0.86542 0.85117 0.78254 0.77372 1.20243 1.21247 1.20188 1.46167 1.14332 1.56257 1.18309 1.16787 0.82505 0.77784 0.84991 1.90642 1.52003 1.62400 1.40419 1.19721 0.95893 1.22746 0.99880 1.24035 0.99058 0.92770 0.89695 1.77227 0.89324 1.24882 1.21380 1.45293 1.12617 1.47325 1.08613 1.17770 0.85081 0.90519 0.91391 1.21687 1.02203 0.97217 0.97239 1.21553 0.92062 0.96413 0.97722 1.22131 0.97889 1.01595 0.99574 1.22538 0.97169 0.91144 0.91635 1.66820 0.98662 1.25300 1.32411 1.18227 0.89159 0.88882 0.81938 1.42094 1.14861 1.62834 1.16458 0.96161 0.93232 0.94070 0.95112 0.88469 0.92623 0.78207 0.78616 0.83355 0.83871 0.84095 0.81653 0.76091 0.73213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.92 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.70 -14.86 5.01 -56.22 -0.28 -15.14 16 14 C 0.59 12.22 6.36 -12.81 -0.08 12.14 16 15 O -0.57 -13.10 12.27 5.20 0.06 -13.04 16 16 C -0.36 -6.34 6.15 -104.81 -0.64 -6.99 16 17 C 0.13 1.99 11.49 -16.95 -0.19 1.80 16 18 N -0.31 -4.66 11.97 30.89 0.37 -4.29 16 19 N -0.35 -5.34 3.75 -11.07 -0.04 -5.38 16 20 C 0.38 4.83 7.37 -154.44 -1.14 3.69 16 21 C -0.16 -1.61 9.73 -39.25 -0.38 -1.99 16 22 C -0.05 -0.35 10.17 -39.31 -0.40 -0.75 16 23 C -0.19 -1.14 10.11 -39.42 -0.40 -1.53 16 24 C 0.13 1.00 11.18 -17.57 -0.20 0.81 16 25 N -0.52 -5.84 8.10 -12.30 -0.10 -5.94 16 26 C 0.45 7.37 7.87 -153.50 -1.21 6.16 16 27 N -0.81 -11.79 8.95 31.45 0.28 -11.51 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.04 0.92 5.65 -51.93 -0.29 0.63 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.39 7.07 7.48 -40.82 -0.31 6.77 16 35 H 0.20 2.25 7.49 -52.48 -0.39 1.85 16 36 H 0.15 1.44 7.89 -52.49 -0.41 1.03 16 37 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 38 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 39 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.41 5.06 6.86 -40.82 -0.28 4.78 16 41 H 0.43 6.65 7.01 -40.82 -0.29 6.36 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -32.50 343.10 -8.69 -41.19 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -4.74 Total: 16.13 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -5.02 Total: 1.35 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 0.85 Total: -66.51 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.50 -8.69 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346721480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.108 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds