Wall clock time and date at job start Tue Mar 31 2020 11:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46982 * 2 1 4 4 H 1.09000 * 109.47164 * 54.99634 * 3 2 1 5 5 C 1.50695 * 109.47184 * 174.99681 * 3 2 1 6 6 H 1.08000 * 120.00078 * 120.00191 * 5 3 2 7 7 C 1.37880 * 120.00311 * 300.00289 * 5 3 2 8 8 N 1.31511 * 119.99648 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00308 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47175 * 59.99274 * 9 7 5 11 11 H 1.48493 * 109.47184 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46549 * 299.99675 * 9 7 5 13 13 N 1.46496 * 109.47129 * 294.99934 * 3 2 1 14 14 C 1.34780 * 120.00060 * 84.99740 * 13 3 2 15 15 O 1.21687 * 119.99928 * 0.02562 * 14 13 3 16 16 C 1.46766 * 119.99821 * 180.02562 * 14 13 3 17 17 C 1.41530 * 126.51093 * 359.97438 * 16 14 13 18 18 N 1.30292 * 108.25958 * 180.02562 * 17 16 14 19 19 N 1.39898 * 109.25309 * 359.97438 * 18 17 16 20 20 C 1.39727 * 125.78045 * 179.97438 * 19 18 17 21 21 C 1.38977 * 119.68831 * 335.02966 * 20 19 18 22 22 C 1.38400 * 119.10226 * 180.25379 * 21 20 19 23 23 C 1.38804 * 118.48852 * 359.52457 * 22 21 20 24 24 C 1.38112 * 119.29850 * 0.43302 * 23 22 21 25 25 N 1.31904 * 120.84343 * 359.81325 * 24 23 22 26 26 C 1.35245 * 108.44646 * 0.25087 * 19 18 17 27 27 N 1.37931 * 126.47301 * 179.75333 * 26 19 18 28 28 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47682 * 299.99852 * 1 2 3 30 30 H 1.08998 * 109.47030 * 60.00600 * 1 2 3 31 31 H 1.08995 * 109.47244 * 240.00006 * 2 1 3 32 32 H 1.08998 * 109.47030 * 119.99400 * 2 1 3 33 33 H 0.97007 * 120.00328 * 180.02562 * 8 7 5 34 34 H 0.96994 * 119.99857 * 265.00170 * 13 3 2 35 35 H 1.08003 * 125.86744 * 0.02562 * 17 16 14 36 36 H 1.08002 * 120.44460 * 359.97136 * 21 20 19 37 37 H 1.08004 * 120.75142 * 179.74865 * 22 21 20 38 38 H 1.08002 * 120.35032 * 180.20539 * 23 22 21 39 39 H 1.08007 * 119.57982 * 179.78835 * 24 23 22 40 40 H 0.96998 * 119.99692 * 0.02562 * 27 26 19 41 41 H 0.96995 * 120.00079 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3376 2.1733 9 14 6.0049 0.8815 1.3820 10 1 6.4993 2.2817 1.3822 11 1 6.3977 0.2180 2.6511 12 1 6.5974 0.1475 0.2351 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3420 2.6325 -0.4310 16 6 0.0466 3.3200 -2.6213 17 6 0.8365 3.4376 -3.7897 18 7 0.1459 4.0836 -4.6860 19 7 -1.1060 4.4124 -4.1551 20 6 -2.1189 5.1071 -4.8212 21 6 -1.7936 5.9653 -5.8648 22 6 -2.8061 6.6514 -6.5126 23 6 -4.1150 6.4464 -6.0985 24 6 -4.3654 5.5775 -5.0545 25 7 -3.3789 4.9414 -4.4528 26 6 -1.1675 3.9493 -2.8859 27 7 -2.2325 4.0741 -2.0184 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8291 -0.0603 2.9504 34 1 2.2719 2.1232 -1.9977 35 1 1.8393 3.0572 -3.9166 36 1 -0.7642 6.0985 -6.1631 37 1 -2.5831 7.3281 -7.3243 38 1 -4.9287 6.9636 -6.5851 39 1 -5.3818 5.4173 -4.7264 40 1 -3.0390 4.5315 -2.3032 41 1 -2.1750 3.7044 -1.1235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346721480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:27 Heat of formation + Delta-G solvation = 59.608965 kcal Electronic energy + Delta-G solvation = -25623.341938 eV Core-core repulsion = 21925.070943 eV Total energy + Delta-G solvation = -3698.270995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76105 -40.98435 -40.02119 -36.85246 -35.92648 -34.54699 -34.12980 -33.50279 -32.71012 -30.57874 -29.92008 -28.64739 -25.52895 -24.87478 -24.70537 -23.35391 -22.20841 -21.45745 -20.93201 -19.77476 -18.71159 -17.75795 -17.37756 -17.28060 -17.13548 -16.93742 -16.48900 -16.31400 -15.88843 -15.85815 -15.29528 -14.77809 -14.65019 -14.57709 -14.21104 -14.11869 -13.67813 -13.36867 -13.10644 -12.97181 -12.85056 -12.60531 -12.35719 -12.17679 -12.05190 -11.98451 -11.52259 -11.36301 -10.98511 -10.98214 -10.76161 -10.59413 -10.43339 -9.59154 -9.42109 -8.87134 -8.09869 -6.26222 -0.29147 0.17643 0.85339 0.99159 1.22456 1.48368 1.50272 1.57656 2.42402 2.58229 2.71523 2.76077 2.86522 3.19592 3.29662 3.52711 3.93572 3.99380 4.03483 4.17614 4.25441 4.33522 4.56894 4.63637 4.64432 4.73222 4.86127 4.98140 5.15804 5.17788 5.30443 5.32945 5.44305 5.52348 5.64140 5.72288 5.77117 5.89199 6.04469 6.16711 6.25625 6.33667 6.61334 6.82284 6.91085 7.18596 7.40877 7.75360 8.95355 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028890 B = 0.002864 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.966187 B = 9773.488726 C =10424.287610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.283 3.717 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.590 3.410 15 O -0.602 6.602 16 C -0.388 4.388 17 C 0.137 3.863 18 N -0.311 5.311 19 N -0.354 5.354 20 C 0.332 3.668 21 C -0.169 4.169 22 C -0.046 4.046 23 C -0.169 4.169 24 C 0.122 3.878 25 N -0.540 5.540 26 C 0.443 3.557 27 N -0.806 5.806 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.400 0.600 35 H 0.225 0.775 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.196 0.804 40 H 0.416 0.584 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 12.945 -19.417 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.349 5.349 14 C 0.380 3.620 15 O -0.486 6.486 16 C -0.408 4.408 17 C -0.053 4.053 18 N -0.129 5.129 19 N -0.138 5.138 20 C 0.107 3.893 21 C -0.192 4.192 22 C -0.072 4.072 23 C -0.189 4.189 24 C -0.036 4.036 25 N -0.255 5.255 26 C 0.209 3.791 27 N -0.354 5.354 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.235 0.765 35 H 0.242 0.758 36 H 0.162 0.838 37 H 0.196 0.804 38 H 0.200 0.800 39 H 0.213 0.787 40 H 0.250 0.750 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -14.912 12.732 -19.085 27.363 hybrid contribution 1.134 -0.113 0.795 1.390 sum -13.778 12.619 -18.291 26.146 Atomic orbital electron populations 1.21652 0.97083 0.98801 1.00297 1.21779 0.93704 0.99351 1.01083 1.18309 0.93440 0.88971 0.81318 0.98281 1.21581 0.91560 1.38646 1.06622 0.90992 1.25747 1.03126 0.94501 0.95089 1.70048 1.37005 1.38537 1.09837 0.85458 0.79382 0.78372 0.77471 1.19753 1.21348 1.18912 1.45887 1.15102 1.56468 1.17464 1.17169 0.81808 0.77260 0.85754 1.90617 1.52747 1.63451 1.41825 1.19463 0.97404 1.24501 0.99455 1.24416 0.99979 0.92447 0.88450 1.77145 0.89640 1.24512 1.21582 1.45420 1.13049 1.47238 1.08062 1.18098 0.85333 0.92541 0.93291 1.21823 1.03071 0.97323 0.96945 1.22010 0.91619 0.95796 0.97798 1.22629 0.98662 0.99694 0.97907 1.23222 0.97583 0.90865 0.91887 1.66757 0.98784 1.26488 1.33440 1.18354 0.89154 0.88772 0.82840 1.42040 1.14943 1.62519 1.15939 0.94016 0.95291 0.93941 0.94296 0.91067 0.92725 0.76502 0.75842 0.83817 0.80398 0.80018 0.78694 0.75038 0.73857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.08 5.45 30.60 0.17 -5.91 16 3 C 0.28 14.80 2.24 44.25 0.10 14.90 16 4 H 0.00 -0.04 7.58 -2.39 -0.02 -0.06 16 5 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 N -0.70 -30.24 5.01 -449.99 -2.26 -32.50 16 14 C 0.59 25.13 6.36 86.47 0.55 25.68 16 15 O -0.60 -28.85 12.27 -4.31 -0.05 -28.91 16 16 C -0.39 -13.83 6.15 -19.98 -0.12 -13.95 16 17 C 0.14 4.03 11.49 85.73 0.99 5.02 16 18 N -0.31 -9.26 11.97 -56.19 -0.67 -9.93 16 19 N -0.35 -10.67 3.75 -188.94 -0.71 -11.38 16 20 C 0.33 8.23 7.37 132.80 0.98 9.21 16 21 C -0.17 -3.13 9.73 22.49 0.22 -2.91 16 22 C -0.05 -0.46 10.17 22.44 0.23 -0.24 16 23 C -0.17 -1.28 10.11 22.38 0.23 -1.06 16 24 C 0.12 1.49 11.18 84.65 0.95 2.44 16 25 N -0.54 -11.56 8.10 -192.84 -1.56 -13.12 16 26 C 0.44 14.78 7.87 132.59 1.04 15.82 16 27 N -0.81 -24.01 8.95 -54.40 -0.49 -24.50 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 30 H 0.04 1.94 5.65 -2.39 -0.01 1.93 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 33 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 34 H 0.40 14.66 7.48 -92.71 -0.69 13.97 16 35 H 0.23 4.87 7.49 -2.91 -0.02 4.85 16 36 H 0.14 2.68 7.89 -2.91 -0.02 2.66 16 37 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 38 H 0.18 -0.06 8.06 -2.91 -0.02 -0.09 16 39 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.42 10.50 6.86 -92.71 -0.64 9.86 16 41 H 0.43 13.75 7.01 -92.71 -0.65 13.10 16 Total: -1.00 -73.78 343.10 2.26 -71.52 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.87 Total: 40.72 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.60 Total: 16.26 kcal Atomic # 7 Polarization: -138.73 SS G_CDS: -5.44 Total: -144.17 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -73.78 2.26 -71.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346721480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.129 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds