Wall clock time and date at job start Tue Mar 31 2020 10:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30875 * 125.87924 * 2 1 4 4 N 1.40093 * 108.21742 * 179.77007 * 3 2 1 5 5 C 1.40178 * 126.05502 * 180.27484 * 4 3 2 6 6 C 1.38873 * 120.05506 * 0.16907 * 5 4 3 7 7 C 1.38097 * 119.98630 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.09433 * 0.02562 * 7 6 5 9 9 C 1.38488 * 120.10381 * 359.97270 * 8 7 6 10 10 F 1.35095 * 119.99049 * 180.02562 * 9 8 7 11 11 C 1.38369 * 120.01714 * 359.77126 * 9 8 7 12 12 C 1.35229 * 107.88845 * 0.41689 * 4 3 2 13 13 C 1.35317 * 107.71706 * 359.58869 * 12 4 3 14 14 C 1.50696 * 126.03687 * 180.29805 * 13 12 4 15 15 N 1.46506 * 109.46920 * 259.97874 * 14 13 12 16 16 C 1.36933 * 120.00602 * 89.99917 * 15 14 13 17 17 H 1.08000 * 120.00377 * 217.29605 * 16 15 14 18 18 C 1.38816 * 119.99768 * 37.28620 * 16 15 14 19 19 N 1.31619 * 119.99696 * 20.80205 * 18 16 15 20 20 Si 1.86801 * 120.00178 * 200.79393 * 18 16 15 21 21 H 1.48499 * 109.46704 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46725 * 120.00079 * 20 18 16 23 23 H 1.48497 * 109.47288 * 240.00501 * 20 18 16 24 24 C 1.46501 * 119.99694 * 269.99447 * 15 14 13 25 25 C 1.52992 * 117.50054 * 187.26842 * 24 15 14 26 26 C 1.53001 * 117.49872 * 118.60919 * 24 15 14 27 27 H 1.09001 * 109.46935 * 269.97794 * 1 2 3 28 28 H 1.09004 * 109.47050 * 29.97455 * 1 2 3 29 29 H 1.08997 * 109.47574 * 149.97659 * 1 2 3 30 30 H 1.08005 * 120.00229 * 0.02914 * 6 5 4 31 31 H 1.08000 * 119.95738 * 180.02562 * 7 6 5 32 32 H 1.07991 * 119.94763 * 179.97438 * 8 7 6 33 33 H 1.07997 * 120.04753 * 180.27905 * 11 9 8 34 34 H 1.08007 * 126.13760 * 179.84909 * 12 4 3 35 35 H 1.08997 * 109.47042 * 19.96980 * 14 13 12 36 36 H 1.08996 * 109.47447 * 139.97711 * 14 13 12 37 37 H 0.97006 * 119.99601 * 174.85287 * 19 18 16 38 38 H 1.09003 * 115.55156 * 332.94661 * 24 15 14 39 39 H 1.08996 * 117.50127 * 0.02562 * 25 24 15 40 40 H 1.09004 * 117.50288 * 145.02264 * 25 24 15 41 41 H 1.09005 * 117.49918 * 214.98465 * 26 24 15 42 42 H 1.09003 * 117.49632 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0604 0.0000 4 7 3.6089 0.6354 0.0053 5 6 4.7389 1.4649 0.0125 6 6 4.5882 2.8454 0.0184 7 6 5.7023 3.6613 0.0249 8 6 6.9685 3.1058 0.0250 9 6 7.1232 1.7296 0.0192 10 9 8.3614 1.1892 0.0199 11 6 6.0099 0.9079 0.0180 12 6 3.6143 -0.7169 -0.0008 13 6 2.3270 -1.1338 -0.0005 14 6 1.8590 -2.5663 0.0001 15 7 1.4787 -2.9563 -1.3599 16 6 2.4109 -3.5013 -2.2019 17 1 2.3977 -3.2560 -3.2536 18 6 3.3731 -4.3691 -1.7037 19 7 3.1715 -4.9887 -0.5601 20 14 4.9538 -4.6575 -2.6564 21 1 4.9364 -3.8477 -3.9010 22 1 6.1148 -4.2567 -1.8218 23 1 5.0670 -6.0969 -3.0034 24 6 0.1010 -2.7634 -1.8190 25 6 -0.2768 -3.3435 -3.1834 26 6 -0.1224 -1.8304 -3.0109 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 3.5998 3.2808 0.0180 31 1 5.5846 4.7349 0.0299 32 1 7.8381 3.7460 0.0297 33 1 6.1300 -0.1654 0.0180 34 1 4.4891 -1.3504 -0.0012 35 1 2.6643 -3.2114 0.3512 36 1 0.9982 -2.6671 0.6611 37 1 3.8084 -5.6507 -0.2484 38 1 -0.6604 -2.7745 -1.0391 39 1 0.4995 -3.8691 -3.7393 40 1 -1.2869 -3.7360 -3.3012 41 1 -1.0309 -1.2280 -3.0152 42 1 0.7558 -1.3598 -3.4531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414380466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:07 Heat of formation + Delta-G solvation = 112.938449 kcal Electronic energy + Delta-G solvation = -26055.943662 eV Core-core repulsion = 22340.065245 eV Total energy + Delta-G solvation = -3715.878417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.01371 -41.17040 -38.85631 -37.04887 -34.06160 -33.42851 -31.29180 -30.73786 -30.48201 -29.11150 -27.28107 -25.63557 -23.78854 -22.72070 -22.28141 -21.38400 -20.36018 -19.85994 -19.08006 -18.09173 -16.42441 -16.29860 -16.17065 -15.76405 -15.69889 -15.45054 -14.94056 -14.41483 -14.24680 -13.96772 -13.64537 -13.32609 -13.12276 -12.88656 -12.57287 -12.48189 -12.08039 -12.02619 -11.98874 -11.52622 -11.41740 -11.22580 -10.87895 -10.77254 -10.64759 -10.54670 -10.09221 -9.86754 -9.81809 -9.58843 -9.29718 -9.00569 -8.53842 -8.49427 -7.60255 -6.54858 -5.90124 -3.43798 0.79454 1.01026 2.40662 2.61308 3.23715 3.28965 3.37149 3.40779 3.58352 4.12523 4.37872 4.50042 4.78442 4.91566 4.93005 4.94317 5.14555 5.27548 5.31572 5.32961 5.43170 5.67650 5.78165 5.85373 5.89935 5.92909 5.98618 6.03728 6.13510 6.17473 6.19760 6.30679 6.44553 6.47063 6.53480 6.59768 6.64722 6.91419 6.99181 7.13734 7.17170 7.50666 7.55071 7.76764 8.08934 8.44548 9.09367 9.71545 10.28519 11.11443 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004904 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.418947 B = 5707.953945 C = 7381.560877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.102 3.898 3 N -0.307 5.307 4 N -0.341 5.341 5 C 0.219 3.781 6 C -0.143 4.143 7 C -0.065 4.065 8 C -0.181 4.181 9 C 0.130 3.870 10 F -0.135 7.135 11 C -0.190 4.190 12 C 0.050 3.950 13 C -0.193 4.193 14 C 0.210 3.790 15 N -0.542 5.542 16 C -0.253 4.253 17 H 0.060 0.940 18 C 0.017 3.983 19 N -0.887 5.887 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.287 1.287 24 C 0.129 3.871 25 C -0.193 4.193 26 C -0.227 4.227 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 13.091 3.182 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 N -0.126 5.126 4 N -0.117 5.117 5 C 0.124 3.876 6 C -0.164 4.164 7 C -0.084 4.084 8 C -0.200 4.200 9 C 0.110 3.890 10 F -0.114 7.114 11 C -0.212 4.212 12 C -0.089 4.089 13 C -0.205 4.205 14 C 0.083 3.917 15 N -0.257 5.257 16 C -0.382 4.382 17 H 0.078 0.922 18 C -0.184 4.184 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.214 1.214 24 C 0.019 3.981 25 C -0.231 4.231 26 C -0.268 4.268 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.188 0.812 35 H 0.124 0.876 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.426 14.187 3.330 14.642 hybrid contribution 1.270 -1.200 -0.756 1.904 sum 2.696 12.987 2.574 13.511 Atomic orbital electron populations 1.20343 0.86803 1.03992 1.02446 1.22456 0.96839 0.90625 0.96739 1.77216 0.85311 1.22839 1.27256 1.45598 1.03766 1.04276 1.58014 1.17190 0.83566 0.89902 0.96952 1.20935 1.00583 0.90887 1.03978 1.20838 0.90739 1.00109 0.96676 1.21088 0.99125 0.92876 1.06959 1.17234 0.79162 0.91329 1.01258 1.91517 1.39477 1.86631 1.93754 1.20731 0.90000 1.01465 1.09053 1.22411 1.00258 0.83012 1.03261 1.21569 0.90923 0.99537 1.08482 1.19424 1.00029 0.86369 0.85832 1.43347 1.02919 1.67737 1.11736 1.18951 1.06362 1.21132 0.91804 0.92192 1.25143 1.00034 0.96006 0.97175 1.69877 1.36099 1.25143 1.21825 0.86391 0.83844 0.77856 0.79804 1.20102 1.21286 1.21400 1.21104 0.88350 0.99972 0.88631 1.23067 1.00860 0.95611 1.03589 1.23406 1.01296 0.92610 1.09475 0.90960 0.91492 0.89022 0.84017 0.84373 0.84551 0.83902 0.81242 0.87647 0.94247 0.93255 0.89495 0.88368 0.90703 0.90917 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.26 36.01 0.37 -0.77 16 2 C 0.10 1.87 7.22 -82.37 -0.59 1.28 16 3 N -0.31 -5.71 11.87 33.69 0.40 -5.31 16 4 N -0.34 -6.22 3.80 -10.70 -0.04 -6.26 16 5 C 0.22 3.45 6.69 -83.60 -0.56 2.89 16 6 C -0.14 -1.90 9.66 -39.40 -0.38 -2.28 16 7 C -0.06 -0.67 10.04 -39.62 -0.40 -1.07 16 8 C -0.18 -1.95 10.02 -39.48 -0.40 -2.34 16 9 C 0.13 1.71 7.30 -39.44 -0.29 1.42 16 10 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 11 C -0.19 -2.80 9.43 -39.33 -0.37 -3.17 16 12 C 0.05 0.97 10.71 -17.10 -0.18 0.78 16 13 C -0.19 -3.89 5.68 -105.03 -0.60 -4.49 16 14 C 0.21 4.60 5.45 -5.19 -0.03 4.57 16 15 N -0.54 -12.55 2.75 -167.03 -0.46 -13.01 16 16 C -0.25 -6.50 8.26 -15.06 -0.12 -6.62 16 17 H 0.06 1.60 7.10 -52.49 -0.37 1.23 16 18 C 0.02 0.43 4.97 -17.43 -0.09 0.35 16 19 N -0.89 -23.84 11.41 55.49 0.63 -23.21 16 20 Si 0.89 20.79 29.61 -169.99 -5.03 15.76 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.13 2.58 4.83 -67.93 -0.33 2.25 16 25 C -0.19 -3.70 9.78 -26.70 -0.26 -3.96 16 26 C -0.23 -4.19 9.90 -26.70 -0.26 -4.45 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.39 4.61 -51.93 -0.24 1.16 16 30 H 0.14 1.86 7.70 -52.48 -0.40 1.46 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 2.09 6.74 -52.49 -0.35 1.74 16 34 H 0.17 3.16 7.04 -52.48 -0.37 2.79 16 35 H 0.11 2.60 5.46 -51.93 -0.28 2.31 16 36 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.09 1.58 7.39 -51.93 -0.38 1.20 16 39 H 0.10 2.10 6.69 -51.93 -0.35 1.75 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -28.47 354.15 -8.88 -37.35 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.27 Total: 6.76 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -4.49 Total: -15.61 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.53 Total: -47.79 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.47 -8.88 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414380466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.290 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds