Wall clock time and date at job start Tue Mar 31 2020 10:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30875 * 125.87924 * 2 1 4 4 N 1.40093 * 108.21742 * 179.77007 * 3 2 1 5 5 C 1.40178 * 126.05502 * 180.27484 * 4 3 2 6 6 C 1.38873 * 120.05506 * 0.16907 * 5 4 3 7 7 C 1.38097 * 119.98630 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.09433 * 0.02562 * 7 6 5 9 9 C 1.38488 * 120.10381 * 359.97270 * 8 7 6 10 10 F 1.35095 * 119.99049 * 180.02562 * 9 8 7 11 11 C 1.38369 * 120.01714 * 359.77126 * 9 8 7 12 12 C 1.35229 * 107.88845 * 0.41689 * 4 3 2 13 13 C 1.35317 * 107.71706 * 359.58869 * 12 4 3 14 14 C 1.50696 * 126.03687 * 180.29805 * 13 12 4 15 15 N 1.46506 * 109.46920 * 259.97874 * 14 13 12 16 16 C 1.36933 * 120.00602 * 89.99917 * 15 14 13 17 17 H 1.08000 * 120.00377 * 217.29605 * 16 15 14 18 18 C 1.38816 * 119.99768 * 37.28620 * 16 15 14 19 19 N 1.31619 * 119.99696 * 20.80205 * 18 16 15 20 20 Si 1.86801 * 120.00178 * 200.79393 * 18 16 15 21 21 H 1.48499 * 109.46704 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46725 * 120.00079 * 20 18 16 23 23 H 1.48497 * 109.47288 * 240.00501 * 20 18 16 24 24 C 1.46501 * 119.99694 * 269.99447 * 15 14 13 25 25 C 1.52992 * 117.50054 * 187.26842 * 24 15 14 26 26 C 1.53001 * 117.49872 * 118.60919 * 24 15 14 27 27 H 1.09001 * 109.46935 * 269.97794 * 1 2 3 28 28 H 1.09004 * 109.47050 * 29.97455 * 1 2 3 29 29 H 1.08997 * 109.47574 * 149.97659 * 1 2 3 30 30 H 1.08005 * 120.00229 * 0.02914 * 6 5 4 31 31 H 1.08000 * 119.95738 * 180.02562 * 7 6 5 32 32 H 1.07991 * 119.94763 * 179.97438 * 8 7 6 33 33 H 1.07997 * 120.04753 * 180.27905 * 11 9 8 34 34 H 1.08007 * 126.13760 * 179.84909 * 12 4 3 35 35 H 1.08997 * 109.47042 * 19.96980 * 14 13 12 36 36 H 1.08996 * 109.47447 * 139.97711 * 14 13 12 37 37 H 0.97006 * 119.99601 * 174.85287 * 19 18 16 38 38 H 1.09003 * 115.55156 * 332.94661 * 24 15 14 39 39 H 1.08996 * 117.50127 * 0.02562 * 25 24 15 40 40 H 1.09004 * 117.50288 * 145.02264 * 25 24 15 41 41 H 1.09005 * 117.49918 * 214.98465 * 26 24 15 42 42 H 1.09003 * 117.49632 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0604 0.0000 4 7 3.6089 0.6354 0.0053 5 6 4.7389 1.4649 0.0125 6 6 4.5882 2.8454 0.0184 7 6 5.7023 3.6613 0.0249 8 6 6.9685 3.1058 0.0250 9 6 7.1232 1.7296 0.0192 10 9 8.3614 1.1892 0.0199 11 6 6.0099 0.9079 0.0180 12 6 3.6143 -0.7169 -0.0008 13 6 2.3270 -1.1338 -0.0005 14 6 1.8590 -2.5663 0.0001 15 7 1.4787 -2.9563 -1.3599 16 6 2.4109 -3.5013 -2.2019 17 1 2.3977 -3.2560 -3.2536 18 6 3.3731 -4.3691 -1.7037 19 7 3.1715 -4.9887 -0.5601 20 14 4.9538 -4.6575 -2.6564 21 1 4.9364 -3.8477 -3.9010 22 1 6.1148 -4.2567 -1.8218 23 1 5.0670 -6.0969 -3.0034 24 6 0.1010 -2.7634 -1.8190 25 6 -0.2768 -3.3435 -3.1834 26 6 -0.1224 -1.8304 -3.0109 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 3.5998 3.2808 0.0180 31 1 5.5846 4.7349 0.0299 32 1 7.8381 3.7460 0.0297 33 1 6.1300 -0.1654 0.0180 34 1 4.4891 -1.3504 -0.0012 35 1 2.6643 -3.2114 0.3512 36 1 0.9982 -2.6671 0.6611 37 1 3.8084 -5.6507 -0.2484 38 1 -0.6604 -2.7745 -1.0391 39 1 0.4995 -3.8691 -3.7393 40 1 -1.2869 -3.7360 -3.3012 41 1 -1.0309 -1.2280 -3.0152 42 1 0.7558 -1.3598 -3.4531 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414380466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:06 Heat of formation + Delta-G solvation = 100.217667 kcal Electronic energy + Delta-G solvation = -26056.495277 eV Core-core repulsion = 22340.065245 eV Total energy + Delta-G solvation = -3716.430031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.06410 -42.54686 -39.94458 -38.67715 -35.54431 -34.93994 -32.98155 -31.87066 -31.69354 -30.64060 -28.49557 -27.36351 -25.39353 -23.83753 -23.50488 -22.90084 -21.85344 -21.44588 -20.43341 -19.37854 -18.11964 -17.38050 -17.30013 -17.22826 -16.86040 -16.79890 -16.41344 -16.05415 -15.72870 -15.37226 -14.82564 -14.71496 -14.46188 -14.15855 -14.01562 -13.82967 -13.54929 -13.16802 -13.11781 -13.09374 -12.84768 -12.69595 -12.59817 -12.37991 -12.36580 -12.13157 -11.92117 -11.41033 -11.31034 -11.00486 -10.83617 -10.40468 -10.05739 -9.90280 -8.93420 -8.41507 -7.84583 -5.41930 -0.32336 -0.00417 1.10694 1.33020 1.36376 1.42578 1.49967 1.79577 2.45502 2.52249 3.07528 3.16508 3.41378 3.49831 3.67650 3.74459 3.78023 3.87869 3.98145 4.17070 4.32532 4.38031 4.43247 4.50166 4.57321 4.62332 4.75136 4.85330 4.87118 4.95863 4.99327 5.01161 5.09271 5.16950 5.20325 5.25113 5.32719 5.43349 5.58213 5.63105 5.66974 5.73435 5.85398 6.15328 6.48724 6.68040 7.16913 7.87673 8.37769 9.12006 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004904 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.418947 B = 5707.953945 C = 7381.560877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.096 3.904 3 N -0.312 5.312 4 N -0.340 5.340 5 C 0.181 3.819 6 C -0.144 4.144 7 C -0.048 4.048 8 C -0.160 4.160 9 C 0.117 3.883 10 F -0.140 7.140 11 C -0.204 4.204 12 C 0.040 3.960 13 C -0.213 4.213 14 C 0.220 3.780 15 N -0.557 5.557 16 C -0.251 4.251 17 H 0.043 0.957 18 C -0.021 4.021 19 N -0.910 5.910 20 Si 0.938 3.062 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.112 3.888 25 C -0.194 4.194 26 C -0.204 4.204 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 16.013 3.156 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 N -0.133 5.133 4 N -0.116 5.116 5 C 0.088 3.912 6 C -0.164 4.164 7 C -0.066 4.066 8 C -0.179 4.179 9 C 0.097 3.903 10 F -0.119 7.119 11 C -0.226 4.226 12 C -0.101 4.101 13 C -0.225 4.225 14 C 0.093 3.907 15 N -0.273 5.273 16 C -0.381 4.381 17 H 0.061 0.939 18 C -0.219 4.219 19 N -0.554 5.554 20 Si 0.767 3.233 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.214 1.214 24 C 0.003 3.997 25 C -0.233 4.233 26 C -0.245 4.245 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.161 0.839 31 H 0.201 0.799 32 H 0.190 0.810 33 H 0.147 0.853 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.987 17.145 3.296 17.487 hybrid contribution 1.488 -1.967 -0.750 2.578 sum 2.475 15.178 2.546 15.588 Atomic orbital electron populations 1.20443 0.84275 1.04470 1.04041 1.22892 0.98408 0.89571 0.96307 1.77141 0.85486 1.23066 1.27560 1.45718 1.04394 1.03932 1.57544 1.17547 0.82979 0.90876 0.99825 1.21150 1.01872 0.89901 1.03467 1.21315 0.89297 1.01904 0.94096 1.21537 1.00688 0.91838 1.03830 1.17446 0.78445 0.92372 1.02031 1.91504 1.39578 1.86938 1.93878 1.20742 0.90647 1.01245 1.09948 1.22413 1.00167 0.84084 1.03454 1.21403 0.91627 0.99203 1.10282 1.19158 0.99265 0.86864 0.85421 1.43464 1.04017 1.68095 1.11716 1.18927 1.07209 1.20539 0.91474 0.93917 1.25574 1.01915 0.96399 0.98006 1.69971 1.36709 1.25894 1.22866 0.85665 0.81537 0.77418 0.78634 1.20470 1.21318 1.21360 1.21372 0.87329 1.01267 0.89692 1.23083 1.01533 0.96135 1.02504 1.23291 1.01524 0.92318 1.07345 0.88782 0.89980 0.89367 0.83909 0.79909 0.80991 0.85325 0.81840 0.90809 0.93246 0.93594 0.87091 0.91328 0.87661 0.87377 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.26 71.24 0.73 -1.31 16 2 C 0.10 3.50 7.22 43.11 0.31 3.81 16 3 N -0.31 -11.53 11.87 -47.33 -0.56 -12.09 16 4 N -0.34 -12.66 3.80 -187.78 -0.71 -13.37 16 5 C 0.18 5.70 6.69 38.09 0.25 5.96 16 6 C -0.14 -3.53 9.66 22.39 0.22 -3.31 16 7 C -0.05 -0.80 10.04 22.24 0.22 -0.58 16 8 C -0.16 -2.86 10.02 22.34 0.22 -2.64 16 9 C 0.12 2.93 7.30 22.36 0.16 3.10 16 10 F -0.14 -3.70 17.27 44.97 0.78 -2.92 16 11 C -0.20 -6.11 9.43 22.43 0.21 -5.90 16 12 C 0.04 1.61 10.71 83.50 0.89 2.51 16 13 C -0.21 -8.80 5.68 -20.13 -0.11 -8.91 16 14 C 0.22 9.88 5.45 85.63 0.47 10.35 16 15 N -0.56 -26.25 2.75 -682.35 -1.88 -28.13 16 16 C -0.25 -13.32 8.26 84.03 0.69 -12.63 16 17 H 0.04 2.38 7.10 -2.91 -0.02 2.36 16 18 C -0.02 -1.13 4.97 84.86 0.42 -0.71 16 19 N -0.91 -50.65 11.41 21.65 0.25 -50.40 16 20 Si 0.94 44.21 29.61 68.60 2.03 46.24 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.11 4.37 4.83 44.99 0.22 4.59 16 25 C -0.19 -7.27 9.78 30.61 0.30 -6.97 16 26 C -0.20 -7.23 9.90 30.62 0.30 -6.93 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.09 2.50 4.61 -2.39 -0.01 2.49 16 30 H 0.14 3.47 7.70 -2.91 -0.02 3.45 16 31 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.92 8.06 -2.92 -0.02 1.89 16 33 H 0.13 4.08 6.74 -2.91 -0.02 4.06 16 34 H 0.16 6.64 7.04 -2.91 -0.02 6.62 16 35 H 0.07 3.82 5.46 -2.39 -0.01 3.80 16 36 H 0.05 2.05 8.06 -2.39 -0.02 2.03 16 37 H 0.25 13.73 8.32 -92.70 -0.77 12.96 16 38 H 0.11 3.81 7.39 -2.39 -0.02 3.79 16 39 H 0.07 2.98 6.69 -2.39 -0.02 2.97 16 40 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 41 H 0.11 3.07 8.14 -2.38 -0.02 3.06 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -64.05 354.15 6.46 -57.59 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.05 Total: 22.68 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 5.52 Total: -19.59 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -2.91 Total: -104.00 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.05 6.46 -57.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414380466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.806 kcal (2) G-P(sol) polarization free energy of solvation -64.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds