Wall clock time and date at job start Tue Mar 31 2020 10:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34831 * 125.49981 * 2 1 4 4 C 1.41395 * 108.24840 * 180.24086 * 3 2 1 5 5 N 1.32609 * 126.39669 * 179.71958 * 4 3 2 6 6 C 1.34640 * 120.00017 * 0.02562 * 5 4 3 7 7 O 1.22178 * 120.00096 * 0.02562 * 6 5 4 8 8 N 1.33839 * 119.99769 * 179.97438 * 6 5 4 9 9 C 1.34094 * 119.99850 * 235.46547 * 8 6 5 10 10 C 1.41460 * 120.67925 * 5.35019 * 9 8 6 11 11 C 1.35167 * 119.25077 * 179.97438 * 10 9 8 12 12 N 1.35611 * 120.69208 * 359.97438 * 11 10 9 13 13 H 0.97004 * 119.26710 * 180.02562 * 12 11 10 14 14 C 1.35602 * 121.46876 * 359.97438 * 12 11 10 15 15 C 1.35178 * 120.69215 * 359.77395 * 14 12 11 16 16 C 1.50701 * 120.37359 * 180.25937 * 15 14 12 17 17 N 1.37620 * 107.20021 * 359.60602 * 4 3 2 18 18 H 0.97001 * 126.38169 * 180.11042 * 17 4 3 19 19 N 1.36571 * 125.49671 * 179.97438 * 2 1 3 20 20 C 1.46501 * 125.84408 * 0.03249 * 19 2 1 21 21 C 1.50699 * 109.47002 * 85.00084 * 20 19 2 22 22 H 1.07996 * 119.99797 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99858 * 179.97438 * 21 20 19 24 24 N 1.31516 * 120.00102 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99797 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47287 * 60.00145 * 25 23 21 27 27 H 1.48509 * 109.47084 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47525 * 299.99857 * 25 23 21 29 29 H 1.09001 * 109.47152 * 89.97945 * 1 2 3 30 30 H 1.09003 * 109.47234 * 209.98030 * 1 2 3 31 31 H 1.09004 * 109.47247 * 329.98182 * 1 2 3 32 32 H 1.07997 * 125.87548 * 359.97097 * 3 2 1 33 33 H 1.08003 * 120.37687 * 359.97438 * 10 9 8 34 34 H 1.07994 * 119.65310 * 180.02562 * 11 10 9 35 35 H 1.08001 * 119.65891 * 180.02562 * 14 12 11 36 36 H 1.08993 * 109.47307 * 270.21708 * 16 15 14 37 37 H 1.09000 * 109.47054 * 30.21973 * 16 15 14 38 38 H 1.09002 * 109.46825 * 150.21782 * 16 15 14 39 39 H 1.09002 * 109.47440 * 205.00199 * 20 19 2 40 40 H 1.08997 * 109.47131 * 325.00343 * 20 19 2 41 41 H 0.97004 * 119.99820 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2900 1.0977 0.0000 4 6 3.6403 0.6784 -0.0056 5 7 4.7083 1.4644 -0.0126 6 6 4.5594 2.8025 -0.0143 7 8 3.4402 3.2926 -0.0090 8 7 5.6373 3.5958 -0.0209 9 6 5.7916 4.5252 0.9334 10 6 4.8842 4.6059 2.0157 11 6 5.0674 5.5537 2.9618 12 7 6.1073 6.4204 2.8812 13 1 6.2193 7.0923 3.5718 14 6 6.9946 6.3681 1.8571 15 6 6.8691 5.4402 0.8821 16 6 7.8627 5.3849 -0.2496 17 7 3.6391 -0.6978 0.0000 18 1 4.4196 -1.2739 -0.0003 19 7 2.3001 -1.1119 0.0005 20 6 1.8313 -2.4999 0.0004 21 6 1.5540 -2.9364 -1.4150 22 1 1.7115 -2.2487 -2.2328 23 6 1.1001 -4.2138 -1.6661 24 7 0.9088 -5.0513 -0.6703 25 14 0.7570 -4.7550 -3.4208 26 1 2.0025 -4.6527 -4.2229 27 1 0.2829 -6.1624 -3.4209 28 1 -0.2867 -3.8806 -4.0135 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 1.9451 2.1211 -0.0004 33 1 4.0545 3.9181 2.0853 34 1 4.3789 5.6209 3.7911 35 1 7.8124 7.0727 1.8220 36 1 7.5217 6.0240 -1.0640 37 1 8.8341 5.7322 0.1024 38 1 7.9510 4.3585 -0.6057 39 1 2.5973 -3.1421 0.4352 40 1 0.9173 -2.5747 0.5894 41 1 0.5898 -5.9502 -0.8470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446338776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:44 Heat of formation + Delta-G solvation = 97.727139 kcal Electronic energy + Delta-G solvation = -24986.382119 eV Core-core repulsion = 21289.764052 eV Total energy + Delta-G solvation = -3696.618067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34663 -41.58274 -39.89435 -36.44979 -35.76345 -34.75634 -33.88875 -33.61801 -32.37636 -31.44607 -28.82168 -28.45929 -27.98768 -25.61131 -24.56715 -23.26355 -22.71830 -21.08536 -20.54465 -19.43362 -18.92762 -18.45973 -17.78277 -17.40653 -17.10629 -16.66651 -16.37425 -15.85053 -15.71851 -15.45344 -15.04100 -14.49643 -14.44019 -14.33348 -14.12996 -13.82934 -13.68492 -13.67372 -13.62996 -13.22444 -13.12907 -12.97161 -12.72949 -12.37953 -12.29912 -12.17717 -12.05436 -11.47597 -11.10652 -10.78483 -10.34204 -10.29705 -10.09109 -9.76095 -8.60870 -8.36297 -8.15202 -6.56893 0.00546 0.36545 0.44534 0.64384 1.37877 1.39747 1.47444 1.56162 2.14640 2.29495 2.57322 2.72860 2.93185 3.14059 3.62801 3.68529 3.82187 4.06865 4.19155 4.24096 4.28568 4.30337 4.58894 4.65857 4.80590 4.83519 4.85896 4.91666 4.93807 5.01841 5.07428 5.16297 5.27383 5.32324 5.50155 5.65376 5.69436 5.70756 5.92622 6.05476 6.19660 6.39195 6.48843 6.60752 6.79131 7.16289 7.34771 8.20815 8.65706 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.002521 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.079610 B =11103.041220 C =11524.230022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.199 3.801 3 C -0.352 4.352 4 C 0.460 3.540 5 N -0.713 5.713 6 C 0.645 3.355 7 O -0.659 6.659 8 N -0.657 5.657 9 C 0.285 3.715 10 C -0.299 4.299 11 C 0.174 3.826 12 N -0.560 5.560 13 H 0.450 0.550 14 C 0.162 3.838 15 C -0.206 4.206 16 C -0.081 4.081 17 N -0.473 5.473 18 H 0.449 0.551 19 N -0.351 5.351 20 C 0.269 3.731 21 C -0.564 4.564 22 H 0.054 0.946 23 C 0.033 3.967 24 N -0.911 5.911 25 Si 0.963 3.037 26 H -0.279 1.279 27 H -0.275 1.275 28 H -0.266 1.266 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.169 0.831 33 H 0.103 0.897 34 H 0.211 0.789 35 H 0.230 0.770 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.143 23.001 12.631 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.384 4.384 4 C 0.207 3.793 5 N -0.476 5.476 6 C 0.346 3.654 7 O -0.544 6.544 8 N -0.397 5.397 9 C 0.128 3.872 10 C -0.327 4.327 11 C 0.042 3.958 12 N -0.164 5.164 13 H 0.291 0.709 14 C 0.030 3.970 15 C -0.214 4.214 16 C -0.138 4.138 17 N -0.198 5.198 18 H 0.297 0.703 19 N -0.138 5.138 20 C 0.152 3.848 21 C -0.602 4.602 22 H 0.072 0.928 23 C -0.170 4.170 24 N -0.549 5.549 25 Si 0.788 3.212 26 H -0.205 1.205 27 H -0.200 1.200 28 H -0.191 1.191 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.186 0.814 33 H 0.121 0.879 34 H 0.228 0.772 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.659 22.025 11.921 26.499 hybrid contribution -0.947 -1.049 -0.675 1.566 sum 7.712 20.975 11.247 25.019 Atomic orbital electron populations 1.20771 0.83343 1.05465 1.05130 1.21835 0.96018 0.84381 0.90463 1.22093 0.91271 1.00181 1.24871 1.19276 0.91950 0.82795 0.85325 1.68763 1.28777 1.05332 1.44738 1.18596 0.85344 0.86258 0.75209 1.90674 1.28841 1.79553 1.55367 1.68474 1.26371 1.14251 1.30615 1.19451 0.91739 0.87283 0.88734 1.21599 1.04605 1.06478 0.99977 1.22118 0.89257 0.86989 0.97474 1.41277 1.21532 1.30008 1.23630 0.70856 1.22312 0.93328 0.96336 0.84996 1.19512 0.99918 0.99435 1.02535 1.20308 0.96792 1.01769 0.94958 1.44441 0.99014 1.04504 1.71807 0.70281 1.47781 0.92873 1.07888 1.65260 1.19700 0.96111 0.70815 0.98150 1.21495 1.47472 0.98785 0.92480 0.92812 1.25576 0.94104 0.95773 1.01515 1.69954 1.44772 1.07265 1.32902 0.85523 0.78699 0.77717 0.79307 1.20469 1.19981 1.19119 0.88496 0.89446 0.86816 0.81368 0.87863 0.77222 0.75364 0.92215 0.88243 0.94254 0.94186 0.91061 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.69 10.09 71.24 0.72 -1.98 16 2 C 0.20 8.01 6.92 41.04 0.28 8.30 16 3 C -0.35 -16.15 9.41 22.26 0.21 -15.94 16 4 C 0.46 22.56 8.08 134.03 1.08 23.64 16 5 N -0.71 -37.83 10.62 -321.75 -3.42 -41.24 16 6 C 0.64 34.34 7.01 179.39 1.26 35.60 16 7 O -0.66 -36.18 12.54 -5.90 -0.07 -36.25 16 8 N -0.66 -31.33 9.66 -318.09 -3.07 -34.40 16 9 C 0.29 10.12 6.55 40.39 0.26 10.38 16 10 C -0.30 -8.95 8.93 22.36 0.20 -8.75 16 11 C 0.17 2.22 11.17 83.40 0.93 3.15 16 12 N -0.56 -2.27 5.25 -195.19 -1.02 -3.30 16 13 H 0.45 -3.09 8.90 -92.71 -0.82 -3.91 16 14 C 0.16 1.24 10.82 83.40 0.90 2.15 16 15 C -0.21 -4.58 5.89 -19.78 -0.12 -4.70 16 16 C -0.08 -1.71 9.81 71.24 0.70 -1.01 16 17 N -0.47 -20.84 7.39 -54.72 -0.40 -21.24 16 18 H 0.45 17.88 8.96 -213.28 -1.91 15.97 16 19 N -0.35 -15.16 3.64 -337.54 -1.23 -16.39 16 20 C 0.27 12.27 5.93 85.63 0.51 12.78 16 21 C -0.56 -28.52 9.39 25.60 0.24 -28.28 16 22 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 23 C 0.03 1.65 5.46 84.65 0.46 2.12 16 24 N -0.91 -47.52 13.29 21.45 0.28 -47.23 16 25 Si 0.96 40.88 29.54 68.60 2.03 42.91 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.09 2.53 7.14 -2.39 -0.02 2.51 16 31 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.17 8.16 5.76 -2.91 -0.02 8.15 16 33 H 0.10 4.01 6.41 -2.91 -0.02 3.99 16 34 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.23 -0.97 8.06 -2.91 -0.02 -0.99 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 38 H 0.04 1.17 7.57 -2.39 -0.02 1.15 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 3.19 7.18 -2.39 -0.02 3.17 16 41 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -94.86 353.49 -0.91 -95.77 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -1.64 Total: 23.92 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 7.64 Total: 37.46 kcal Atomic # 7 Polarization: -154.94 SS G_CDS: -8.86 Total: -163.80 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.07 Total: -36.25 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -94.86 -0.91 -95.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446338776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.492 kcal (2) G-P(sol) polarization free energy of solvation -94.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds