Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47345 * 2 1 4 4 N 1.30828 * 125.96188 * 305.03288 * 3 2 1 5 5 C 1.33243 * 109.83056 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.52753 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47084 * 89.99802 * 6 5 4 8 8 C 1.34778 * 119.99771 * 179.72240 * 7 6 5 9 9 O 1.21588 * 119.99878 * 0.28054 * 8 7 6 10 10 N 1.34771 * 120.00173 * 180.27215 * 8 7 6 11 11 C 1.39950 * 120.00214 * 174.85121 * 10 8 7 12 12 C 1.39284 * 119.95211 * 145.77077 * 11 10 8 13 13 C 1.38486 * 120.43509 * 180.02562 * 12 11 10 14 14 C 1.37688 * 120.31990 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88122 * 359.97438 * 14 13 12 16 16 C 1.41409 * 120.20972 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99943 * 205.18275 * 16 15 14 18 18 C 1.39937 * 120.00081 * 25.17719 * 16 15 14 19 19 N 1.30831 * 119.99439 * 16.78574 * 18 16 15 20 20 Si 1.86791 * 120.00214 * 196.78685 * 18 16 15 21 21 H 1.48505 * 109.47187 * 89.99991 * 20 18 16 22 22 H 1.48494 * 109.47326 * 210.00074 * 20 18 16 23 23 H 1.48501 * 109.47081 * 330.00327 * 20 18 16 24 24 C 1.38242 * 119.94876 * 325.49374 * 11 10 8 25 25 N 1.30709 * 108.94261 * 0.25922 * 5 4 3 26 26 N 1.34426 * 125.95939 * 124.99643 * 3 2 1 27 27 H 0.96996 * 126.82811 * 0.03173 * 26 3 2 28 28 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46539 * 299.99152 * 1 2 3 30 30 H 1.08996 * 109.47152 * 59.99391 * 1 2 3 31 31 H 1.09008 * 109.46814 * 240.00492 * 2 1 3 32 32 H 1.08996 * 109.47152 * 120.00609 * 2 1 3 33 33 H 1.08999 * 109.46814 * 329.99616 * 6 5 4 34 34 H 1.09002 * 109.46938 * 209.99943 * 6 5 4 35 35 H 0.97000 * 120.00636 * 0.02562 * 7 6 5 36 36 H 0.96998 * 119.99839 * 354.85141 * 10 8 7 37 37 H 1.08000 * 119.78260 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.84337 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.05586 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99557 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.15697 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7154 2.3478 -0.8671 5 6 2.3421 3.4838 -0.5636 6 6 2.2296 4.7773 -1.3287 7 7 1.1267 5.5728 -0.7836 8 6 0.8413 6.7797 -1.3113 9 8 1.4959 7.2060 -2.2431 10 7 -0.1697 7.5139 -0.8063 11 6 -0.3981 8.8105 -1.2811 12 6 -1.6989 9.3012 -1.3649 13 6 -1.9365 10.5825 -1.8337 14 6 -0.8880 11.3861 -2.2220 15 6 0.4319 10.9041 -2.1419 16 6 1.5138 11.7233 -2.5393 17 1 2.4393 11.2738 -2.8676 18 6 1.3853 13.1164 -2.5072 19 7 0.4201 13.6685 -1.8179 20 14 2.5919 14.1876 -3.4485 21 1 2.0794 14.4206 -4.8226 22 1 2.7470 15.4892 -2.7507 23 1 3.9085 13.5045 -3.5205 24 6 0.6681 9.6042 -1.6608 25 7 3.0740 3.2930 0.5023 26 7 2.8839 1.9570 0.8913 27 1 3.2895 1.5091 1.6501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0375 4.5622 -2.3798 34 1 3.1609 5.3361 -1.2365 35 1 0.6047 5.2329 -0.0400 36 1 -0.7391 7.1437 -0.1137 37 1 -2.5278 8.6785 -1.0623 38 1 -2.9490 10.9532 -1.8952 39 1 -1.0782 12.3845 -2.5874 40 1 0.3312 14.6342 -1.7954 41 1 1.6775 9.2260 -1.5923 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455900949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = 74.651815 kcal Electronic energy + Delta-G solvation = -24470.911329 eV Core-core repulsion = 20773.292641 eV Total energy + Delta-G solvation = -3697.618688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58016 -39.83440 -37.33966 -35.39913 -34.41728 -34.17115 -33.02552 -32.65803 -30.60409 -29.72876 -28.40449 -26.63729 -25.19198 -24.78725 -21.97452 -21.39083 -20.79234 -20.70342 -19.98868 -18.42244 -17.93537 -17.54294 -16.32472 -15.80270 -15.35304 -15.29457 -14.80293 -14.78266 -14.52608 -14.30850 -14.12573 -13.41058 -13.16797 -13.05901 -12.83370 -12.68627 -12.44980 -12.08123 -12.05096 -11.65848 -11.56808 -11.12158 -11.06952 -10.83412 -10.57206 -10.40264 -10.38703 -10.14298 -9.93766 -9.61922 -9.41822 -9.06442 -8.93551 -8.89492 -7.35636 -6.80645 -6.62267 -4.24877 1.13786 2.17232 2.28634 2.82169 2.98735 3.15119 3.20119 3.22992 3.29497 3.54233 3.78378 4.03559 4.12186 4.24570 4.61131 4.64658 4.72541 4.74193 4.96307 5.28718 5.39771 5.50303 5.56718 5.74770 5.81037 5.85554 6.00102 6.31923 6.48003 6.50544 6.60740 6.83954 6.87639 7.13100 7.18143 7.32780 7.42357 7.70334 7.77135 7.91007 8.08234 8.20036 8.33198 8.50203 8.75378 8.98006 9.06100 9.11844 10.30027 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002344 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.036955 B =11943.591973 C =12771.376663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.283 3.717 4 N -0.523 5.523 5 C 0.218 3.782 6 C 0.238 3.762 7 N -0.745 5.745 8 C 0.703 3.297 9 O -0.563 6.563 10 N -0.680 5.680 11 C 0.170 3.830 12 C -0.262 4.262 13 C -0.092 4.092 14 C -0.173 4.173 15 C 0.120 3.880 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.797 5.797 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.209 4.209 25 N -0.294 5.294 26 N -0.481 5.481 27 H 0.441 0.559 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -24.440 6.981 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C 0.005 3.995 4 N -0.252 5.252 5 C -0.066 4.066 6 C 0.111 3.889 7 N -0.403 5.403 8 C 0.404 3.596 9 O -0.438 6.438 10 N -0.326 5.326 11 C 0.077 3.923 12 C -0.284 4.284 13 C -0.111 4.111 14 C -0.193 4.193 15 C 0.117 3.883 16 C -0.487 4.487 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.423 5.423 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.231 4.231 25 N -0.124 5.124 26 N -0.199 5.199 27 H 0.286 0.714 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.227 0.773 36 H 0.227 0.773 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.612 -23.265 6.184 24.127 hybrid contribution 0.234 -0.381 1.048 1.139 sum 1.846 -23.646 7.231 24.796 Atomic orbital electron populations 1.21704 0.92531 1.02643 1.03536 1.20191 0.97933 0.85850 1.04416 1.24506 0.90482 0.97593 0.86956 1.70377 1.27762 0.99335 1.27721 1.24243 0.93564 0.95781 0.92964 1.19160 0.91318 0.82636 0.95830 1.44907 1.36962 1.19101 1.39355 1.15816 0.81562 0.79802 0.82441 1.90992 1.52478 1.70926 1.29433 1.42539 1.32698 1.15144 1.42195 1.17218 0.93912 0.81243 0.99884 1.20006 0.92992 0.98274 1.17133 1.20441 0.97368 0.93563 0.99763 1.21336 0.91895 1.00283 1.05803 1.17493 0.92895 0.90374 0.87583 1.19588 1.00068 0.90426 1.38644 0.90350 1.25900 0.95939 0.98919 0.93437 1.69837 1.29383 1.12517 1.30535 0.86309 0.81309 0.78798 0.80265 1.19313 1.20454 1.18619 1.21011 0.96562 0.95644 1.09833 1.78117 1.24374 0.93395 1.16483 1.48095 1.37051 1.09143 1.25640 0.71370 0.91303 0.92498 0.90809 0.88104 0.89638 0.88561 0.88979 0.77318 0.77271 0.89383 0.89096 0.86355 0.91053 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.87 37.16 0.37 -0.29 16 2 C -0.04 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.28 2.30 7.51 -155.70 -1.17 1.13 16 4 N -0.52 -5.98 11.16 -8.16 -0.09 -6.07 16 5 C 0.22 2.69 7.51 -156.85 -1.18 1.51 16 6 C 0.24 3.20 6.30 -5.19 -0.03 3.17 16 7 N -0.74 -10.66 5.55 -66.42 -0.37 -11.02 16 8 C 0.70 13.40 8.29 -86.92 -0.72 12.68 16 9 O -0.56 -13.26 14.10 5.29 0.07 -13.18 16 10 N -0.68 -12.77 5.34 -14.27 -0.08 -12.85 16 11 C 0.17 3.99 6.25 -83.76 -0.52 3.46 16 12 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 14 C -0.17 -4.67 8.69 -38.84 -0.34 -5.01 16 15 C 0.12 3.38 5.57 -106.85 -0.59 2.79 16 16 C -0.46 -12.89 9.05 -37.74 -0.34 -13.23 16 17 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 18 C 0.07 1.97 5.16 -17.34 -0.09 1.88 16 19 N -0.80 -21.22 10.94 55.55 0.61 -20.62 16 20 Si 0.91 19.61 29.59 -169.99 -5.03 14.58 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 24 C -0.21 -5.60 8.39 -38.69 -0.32 -5.93 16 25 N -0.29 -3.47 12.80 32.42 0.41 -3.06 16 26 N -0.48 -3.79 7.45 32.62 0.24 -3.55 16 27 H 0.44 1.79 8.96 -182.34 -1.63 0.16 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.39 4.69 8.48 -40.82 -0.35 4.34 16 36 H 0.39 5.80 8.84 -40.82 -0.36 5.44 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.11 2.98 6.48 -52.48 -0.34 2.64 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -34.90 355.61 -11.14 -46.04 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.36 Total: 11.54 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -5.92 Total: -7.16 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.73 Total: -57.17 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.07 Total: -13.18 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.90 -11.14 -46.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455900949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.689 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds