Wall clock time and date at job start Tue Mar 31 2020 10:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47345 * 2 1 4 4 N 1.30828 * 125.96188 * 305.03288 * 3 2 1 5 5 C 1.33243 * 109.83056 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.52753 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47084 * 89.99802 * 6 5 4 8 8 C 1.34778 * 119.99771 * 179.72240 * 7 6 5 9 9 O 1.21588 * 119.99878 * 0.28054 * 8 7 6 10 10 N 1.34771 * 120.00173 * 180.27215 * 8 7 6 11 11 C 1.39950 * 120.00214 * 174.85121 * 10 8 7 12 12 C 1.39284 * 119.95211 * 145.77077 * 11 10 8 13 13 C 1.38486 * 120.43509 * 180.02562 * 12 11 10 14 14 C 1.37688 * 120.31990 * 359.97438 * 13 12 11 15 15 C 1.40738 * 119.88122 * 359.97438 * 14 13 12 16 16 C 1.41409 * 120.20972 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99943 * 205.18275 * 16 15 14 18 18 C 1.39937 * 120.00081 * 25.17719 * 16 15 14 19 19 N 1.30831 * 119.99439 * 16.78574 * 18 16 15 20 20 Si 1.86791 * 120.00214 * 196.78685 * 18 16 15 21 21 H 1.48505 * 109.47187 * 89.99991 * 20 18 16 22 22 H 1.48494 * 109.47326 * 210.00074 * 20 18 16 23 23 H 1.48501 * 109.47081 * 330.00327 * 20 18 16 24 24 C 1.38242 * 119.94876 * 325.49374 * 11 10 8 25 25 N 1.30709 * 108.94261 * 0.25922 * 5 4 3 26 26 N 1.34426 * 125.95939 * 124.99643 * 3 2 1 27 27 H 0.96996 * 126.82811 * 0.03173 * 26 3 2 28 28 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46539 * 299.99152 * 1 2 3 30 30 H 1.08996 * 109.47152 * 59.99391 * 1 2 3 31 31 H 1.09008 * 109.46814 * 240.00492 * 2 1 3 32 32 H 1.08996 * 109.47152 * 120.00609 * 2 1 3 33 33 H 1.08999 * 109.46814 * 329.99616 * 6 5 4 34 34 H 1.09002 * 109.46938 * 209.99943 * 6 5 4 35 35 H 0.97000 * 120.00636 * 0.02562 * 7 6 5 36 36 H 0.96998 * 119.99839 * 354.85141 * 10 8 7 37 37 H 1.08000 * 119.78260 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.84337 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.05586 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99557 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.15697 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7154 2.3478 -0.8671 5 6 2.3421 3.4838 -0.5636 6 6 2.2296 4.7773 -1.3287 7 7 1.1267 5.5728 -0.7836 8 6 0.8413 6.7797 -1.3113 9 8 1.4959 7.2060 -2.2431 10 7 -0.1697 7.5139 -0.8063 11 6 -0.3981 8.8105 -1.2811 12 6 -1.6989 9.3012 -1.3649 13 6 -1.9365 10.5825 -1.8337 14 6 -0.8880 11.3861 -2.2220 15 6 0.4319 10.9041 -2.1419 16 6 1.5138 11.7233 -2.5393 17 1 2.4393 11.2738 -2.8676 18 6 1.3853 13.1164 -2.5072 19 7 0.4201 13.6685 -1.8179 20 14 2.5919 14.1876 -3.4485 21 1 2.0794 14.4206 -4.8226 22 1 2.7470 15.4892 -2.7507 23 1 3.9085 13.5045 -3.5205 24 6 0.6681 9.6042 -1.6608 25 7 3.0740 3.2930 0.5023 26 7 2.8839 1.9570 0.8913 27 1 3.2895 1.5091 1.6501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0375 4.5622 -2.3798 34 1 3.1609 5.3361 -1.2365 35 1 0.6047 5.2329 -0.0400 36 1 -0.7391 7.1437 -0.1137 37 1 -2.5278 8.6785 -1.0623 38 1 -2.9490 10.9532 -1.8952 39 1 -1.0782 12.3845 -2.5874 40 1 0.3312 14.6342 -1.7954 41 1 1.6775 9.2260 -1.5923 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455900949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:27 Heat of formation + Delta-G solvation = 49.969324 kcal Electronic energy + Delta-G solvation = -24471.981643 eV Core-core repulsion = 20773.292641 eV Total energy + Delta-G solvation = -3698.689001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.35271 -41.43592 -39.17650 -36.61107 -36.05623 -35.03440 -34.76002 -33.60406 -31.72019 -31.39333 -30.02035 -27.96236 -27.19100 -25.25875 -23.52502 -22.72393 -22.28470 -21.72409 -21.46124 -19.63745 -19.44523 -18.90504 -17.65204 -17.22834 -16.73452 -16.63835 -16.40316 -15.99530 -15.79862 -15.52850 -15.13249 -14.91321 -14.65059 -14.24213 -14.12217 -13.90562 -13.70990 -13.48905 -13.01875 -12.98031 -12.89789 -12.75826 -12.47471 -12.16088 -12.01837 -11.99700 -11.56330 -11.37726 -11.21832 -11.20542 -10.98675 -10.80050 -10.66081 -10.26618 -9.36411 -8.71031 -8.56604 -6.34033 0.35515 0.94373 1.04795 1.32233 1.37445 1.50952 1.51990 1.57105 1.99142 2.15433 2.23177 2.76270 2.78214 3.28894 3.39920 3.68805 3.77139 4.22202 4.31989 4.40864 4.50313 4.52233 4.67055 4.69181 4.99731 5.04709 5.06129 5.09981 5.12169 5.13944 5.15043 5.19902 5.24841 5.35688 5.43796 5.71020 5.84442 6.06424 6.09630 6.13463 6.17415 6.38853 6.71511 6.93630 6.97016 7.00847 7.04895 7.53911 8.35859 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.002344 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.036955 B =11943.591973 C =12771.376663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C 0.293 3.707 4 N -0.553 5.553 5 C 0.209 3.791 6 C 0.240 3.760 7 N -0.721 5.721 8 C 0.703 3.297 9 O -0.611 6.611 10 N -0.668 5.668 11 C 0.177 3.823 12 C -0.250 4.250 13 C -0.090 4.090 14 C -0.199 4.199 15 C 0.089 3.911 16 C -0.502 4.502 17 H 0.062 0.938 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.266 1.266 24 C -0.236 4.236 25 N -0.319 5.319 26 N -0.466 5.466 27 H 0.458 0.542 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.409 0.591 36 H 0.417 0.583 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.289 0.711 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -26.587 8.183 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C 0.015 3.985 4 N -0.283 5.283 5 C -0.074 4.074 6 C 0.113 3.887 7 N -0.379 5.379 8 C 0.403 3.597 9 O -0.490 6.490 10 N -0.316 5.316 11 C 0.083 3.917 12 C -0.272 4.272 13 C -0.109 4.109 14 C -0.219 4.219 15 C 0.086 3.914 16 C -0.531 4.531 17 H 0.080 0.920 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.190 1.190 24 C -0.258 4.258 25 N -0.150 5.150 26 N -0.186 5.186 27 H 0.308 0.692 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.255 0.745 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.559 -25.500 7.470 26.577 hybrid contribution 0.486 0.052 0.778 0.919 sum 1.045 -25.448 8.248 26.772 Atomic orbital electron populations 1.21686 0.92841 1.03615 1.02107 1.20466 0.97466 0.83381 1.06775 1.25252 0.89170 0.98498 0.85582 1.70347 1.28857 0.99685 1.29362 1.23834 0.94591 0.95586 0.93386 1.19054 0.90381 0.83308 0.95920 1.44640 1.36823 1.17435 1.38953 1.15958 0.81038 0.80693 0.82019 1.90972 1.53989 1.72289 1.31750 1.42281 1.33145 1.13594 1.42585 1.17272 0.93552 0.82506 0.98346 1.20436 0.93641 0.98114 1.14990 1.20827 0.98153 0.93687 0.98189 1.21308 0.92280 1.00483 1.07801 1.17835 0.93836 0.91273 0.88468 1.19729 0.99980 0.92072 1.41340 0.92004 1.26699 0.97968 0.99379 0.93734 1.69862 1.30645 1.13427 1.30878 0.85217 0.78396 0.77131 0.78992 1.18427 1.18563 1.18986 1.20961 0.96652 0.96212 1.12023 1.78015 1.24728 0.95672 1.16552 1.48013 1.36734 1.07841 1.26036 0.69248 0.89138 0.92999 0.93151 0.86938 0.85993 0.89107 0.89900 0.75502 0.74519 0.85029 0.85755 0.87711 0.90033 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.87 71.98 0.71 -0.23 16 2 C -0.04 -0.20 6.56 29.85 0.20 0.00 16 3 C 0.29 4.13 7.51 138.23 1.04 5.17 16 4 N -0.55 -12.10 11.16 -179.73 -2.01 -14.11 16 5 C 0.21 5.09 7.51 138.63 1.04 6.13 16 6 C 0.24 6.62 6.30 85.63 0.54 7.16 16 7 N -0.72 -20.44 5.55 -482.30 -2.68 -23.12 16 8 C 0.70 26.98 8.29 179.06 1.48 28.47 16 9 O -0.61 -29.97 14.10 -3.99 -0.06 -30.03 16 10 N -0.67 -24.46 5.34 -317.33 -1.70 -26.16 16 11 C 0.18 8.28 6.25 38.10 0.24 8.52 16 12 C -0.25 -10.81 9.97 22.58 0.23 -10.59 16 13 C -0.09 -4.20 10.02 22.20 0.22 -3.97 16 14 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 15 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 16 C -0.50 -29.91 9.05 23.46 0.21 -29.70 16 17 H 0.06 3.72 7.90 -2.91 -0.02 3.70 16 18 C 0.04 1.99 5.16 85.25 0.44 2.43 16 19 N -0.82 -44.80 10.94 21.83 0.24 -44.56 16 20 Si 0.98 41.16 29.59 68.60 2.03 43.19 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C -0.24 -13.25 8.39 22.85 0.19 -13.06 16 25 N -0.32 -7.25 12.80 -51.33 -0.66 -7.91 16 26 N -0.47 -6.38 7.45 -50.71 -0.38 -6.76 16 27 H 0.46 2.50 8.96 -213.10 -1.91 0.59 16 28 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.41 9.22 8.48 -92.71 -0.79 8.43 16 36 H 0.42 11.25 8.84 -92.71 -0.82 10.43 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.10 5.96 6.16 -2.91 -0.02 5.94 16 40 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 41 H 0.08 4.99 6.48 -2.91 -0.02 4.98 16 Total: -1.00 -80.39 355.61 -0.99 -81.38 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -2.41 Total: 33.37 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 6.62 Total: -5.31 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -7.17 Total: -122.61 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.03 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -80.39 -0.99 -81.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455900949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.353 kcal (2) G-P(sol) polarization free energy of solvation -80.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds