Wall clock time and date at job start Tue Mar 31 2020 11:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46999 * 2 1 4 4 C 1.50696 * 109.47075 * 240.00414 * 2 1 3 5 5 H 1.08005 * 119.99770 * 240.00073 * 4 2 1 6 6 C 1.37876 * 120.00435 * 59.99493 * 4 2 1 7 7 N 1.31517 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47311 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46738 * 120.00629 * 8 6 4 11 11 H 1.48496 * 109.47243 * 240.00114 * 8 6 4 12 12 C 1.52998 * 109.47379 * 120.00050 * 2 1 3 13 13 N 1.46505 * 109.47197 * 300.00231 * 12 2 1 14 14 C 1.34777 * 119.99963 * 179.97438 * 13 12 2 15 15 O 1.21571 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.47695 * 119.99725 * 180.02562 * 14 13 12 17 17 C 1.39689 * 120.07828 * 180.02562 * 16 14 13 18 18 C 1.37750 * 119.91816 * 180.02562 * 17 16 14 19 19 C 1.39013 * 120.08097 * 359.97438 * 18 17 16 20 20 N 1.39975 * 119.91865 * 179.97438 * 19 18 17 21 21 C 1.35136 * 127.39193 * 179.70949 * 20 19 18 22 22 N 1.30715 * 107.26078 * 179.84365 * 21 20 19 23 23 N 1.28417 * 110.65610 * 0.43839 * 22 21 20 24 24 N 1.28941 * 110.21912 * 359.72513 * 23 22 21 25 25 C 1.39021 * 120.15913 * 0.25669 * 19 18 17 26 26 C 1.37744 * 120.08060 * 359.48633 * 25 19 18 27 27 H 1.09001 * 109.47239 * 299.99664 * 1 2 3 28 28 H 1.08995 * 109.47207 * 59.99928 * 1 2 3 29 29 H 1.09000 * 109.46576 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47478 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47280 * 300.00234 * 3 2 1 32 32 H 1.09001 * 109.47309 * 60.00372 * 3 2 1 33 33 H 0.96998 * 120.00148 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47181 * 180.02562 * 12 2 1 35 35 H 1.09008 * 109.47149 * 60.00125 * 12 2 1 36 36 H 0.97000 * 119.99324 * 359.97438 * 13 12 2 37 37 H 1.08003 * 120.03693 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.95908 * 180.02562 * 18 17 16 39 39 H 1.08003 * 126.36523 * 359.95663 * 21 20 19 40 40 H 1.08003 * 119.95341 * 179.72529 * 25 19 18 41 41 H 1.07997 * 120.03902 * 180.23920 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2861 -3.6039 10 1 1.1678 -1.5864 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8770 -0.4915 3.6695 15 8 2.5752 -1.4804 3.7809 16 6 1.3841 0.2044 4.8755 17 6 1.7206 -0.2714 6.1450 18 6 1.2588 0.3799 7.2675 19 6 0.4591 1.5096 7.1380 20 7 -0.0088 2.1685 8.2809 21 6 -0.7846 3.2738 8.3312 22 7 -0.9875 3.5482 9.5930 23 7 -0.3859 2.6978 10.3439 24 7 0.2326 1.8259 9.6231 25 6 0.1183 1.9832 5.8762 26 6 0.5808 1.3402 4.7493 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7094 1.1619 -3.4844 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7490 1.2492 36 1 0.9943 0.7582 2.3564 37 1 2.3415 -1.1493 6.2462 38 1 1.5188 0.0128 8.2493 39 1 -1.1675 3.8264 7.4859 40 1 -0.5068 2.8587 5.7795 41 1 0.3188 1.7110 3.7693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457995286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:28 Heat of formation + Delta-G solvation = 111.683992 kcal Electronic energy + Delta-G solvation = -24973.854452 eV Core-core repulsion = 21277.841600 eV Total energy + Delta-G solvation = -3696.012853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.64355 -40.44843 -38.84738 -36.53565 -35.42154 -33.58338 -32.82561 -31.67406 -31.16336 -30.37253 -26.42310 -25.85143 -25.54208 -24.82418 -24.35384 -22.91957 -22.09004 -20.57118 -19.28439 -18.92276 -17.89667 -17.05462 -16.66194 -16.15759 -15.85547 -15.16306 -15.03122 -14.86863 -14.74638 -14.15464 -13.99378 -13.82325 -13.63491 -13.16211 -13.01094 -12.95557 -12.61508 -12.31515 -11.85496 -11.64886 -11.49597 -11.48436 -11.30532 -10.97045 -10.95937 -10.74398 -10.51024 -10.29825 -9.89285 -9.76272 -9.65316 -9.42080 -9.15176 -8.89536 -8.60486 -8.44260 -6.11386 -4.21459 -0.29135 0.75119 0.97508 1.27618 1.81570 2.68482 3.21369 3.30351 3.33208 3.41337 3.55589 3.55899 3.73195 4.19756 4.31787 4.33626 4.38986 4.62834 4.73994 4.89048 4.95847 5.07007 5.15981 5.37452 5.51016 5.62778 5.87330 5.88275 6.09495 6.18819 6.24464 6.37519 6.61221 6.67690 6.78868 6.82620 6.89211 7.22730 7.43613 7.60064 7.80965 7.89734 7.93279 8.02699 8.26875 8.42231 8.79310 9.45038 10.90173 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033070 B = 0.002371 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.493951 B =11805.818389 C =12461.251965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.706 5.706 14 C 0.543 3.457 15 O -0.541 6.541 16 C -0.111 4.111 17 C -0.041 4.041 18 C -0.108 4.108 19 C 0.141 3.859 20 N -0.326 5.326 21 C 0.229 3.771 22 N -0.330 5.330 23 N -0.035 5.035 24 N -0.074 5.074 25 C -0.125 4.125 26 C -0.063 4.063 27 H 0.005 0.995 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.005 0.995 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.242 0.758 40 H 0.142 0.858 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 5.342 15.612 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.357 5.357 14 C 0.329 3.671 15 O -0.420 6.420 16 C -0.115 4.115 17 C -0.060 4.060 18 C -0.128 4.128 19 C 0.048 3.952 20 N -0.116 5.116 21 C -0.068 4.068 22 N -0.179 5.179 23 N -0.030 5.030 24 N -0.059 5.059 25 C -0.146 4.146 26 C -0.083 4.083 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.234 0.766 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.257 0.743 40 H 0.159 0.841 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.223 4.571 16.961 17.859 hybrid contribution -0.024 0.041 -1.960 1.960 sum -3.247 4.613 15.001 16.027 Atomic orbital electron populations 1.21849 0.97713 0.99323 1.00068 1.18375 0.92827 0.92789 0.90548 1.21850 0.98741 0.98294 1.00069 1.21000 1.31524 1.12157 0.89774 0.92303 1.24879 0.94806 0.94914 0.98918 1.69798 1.36671 1.22726 1.23239 0.86506 0.78674 0.79762 0.82908 1.19732 1.21033 1.21029 1.21829 0.98428 0.95951 0.83014 1.46288 1.51953 1.31524 1.05922 1.18106 0.81185 0.84454 0.83364 1.90778 1.38359 1.26118 1.86782 1.20430 0.99628 0.96648 0.94826 1.21268 0.96197 0.98848 0.89734 1.20943 0.97350 0.93821 1.00715 1.17744 0.99771 0.95143 0.82518 1.49072 1.35074 1.20475 1.06986 1.27527 0.92216 0.88025 0.99026 1.74499 1.21732 1.22182 0.99472 1.78098 1.03790 0.98139 1.22985 1.82692 1.20400 1.19861 0.82979 1.20771 1.02517 1.01821 0.89479 1.21275 0.94622 0.93530 0.98847 0.97646 0.89462 0.95294 0.95295 0.89458 0.97648 0.92989 0.92288 0.92282 0.76605 0.82997 0.83523 0.74254 0.84056 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 2 C 0.06 1.19 0.50 -155.66 -0.08 1.11 16 3 C -0.13 -2.73 8.08 37.15 0.30 -2.43 16 4 C -0.51 -12.55 8.01 -34.44 -0.28 -12.83 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.89 -22.50 9.35 55.43 0.52 -21.99 16 8 Si 0.89 19.96 29.54 -169.99 -5.02 14.93 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.52 4.50 -4.04 -0.02 2.50 16 13 N -0.71 -11.03 4.91 -61.29 -0.30 -11.33 16 14 C 0.54 8.31 7.77 -12.40 -0.10 8.22 16 15 O -0.54 -10.21 16.34 5.30 0.09 -10.12 16 16 C -0.11 -1.25 5.88 -104.95 -0.62 -1.86 16 17 C -0.04 -0.41 9.59 -39.22 -0.38 -0.79 16 18 C -0.11 -0.96 9.68 -39.47 -0.38 -1.34 16 19 C 0.14 1.16 6.71 -83.56 -0.56 0.60 16 20 N -0.33 -2.89 3.85 -11.71 -0.05 -2.94 16 21 C 0.23 1.60 12.15 -90.11 -1.09 0.51 16 22 N -0.33 -3.44 12.15 29.65 0.36 -3.08 16 23 N -0.04 -0.43 13.39 60.35 0.81 0.38 16 24 N -0.07 -0.84 13.31 60.35 0.80 -0.04 16 25 C -0.12 -0.81 9.47 -39.47 -0.37 -1.19 16 26 C -0.06 -0.53 9.53 -39.22 -0.37 -0.90 16 27 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 28 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.40 5.34 4.19 -40.82 -0.17 5.17 16 37 H 0.15 1.53 7.64 -52.48 -0.40 1.13 16 38 H 0.15 1.19 7.75 -52.49 -0.41 0.78 16 39 H 0.24 0.35 7.17 -52.48 -0.38 -0.02 16 40 H 0.14 0.41 6.86 -52.48 -0.36 0.05 16 41 H 0.15 1.01 6.39 -52.49 -0.34 0.67 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -30.22 343.73 -5.97 -36.19 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.63 Total: 2.08 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.74 Total: -9.27 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 2.14 Total: -38.99 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.22 -5.97 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457995286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.876 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds