Wall clock time and date at job start Tue Mar 31 2020 11:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46796 * 2 1 4 4 C 1.50703 * 109.47169 * 240.00428 * 2 1 3 5 5 H 1.08002 * 119.99643 * 240.00125 * 4 2 1 6 6 C 1.37876 * 119.99813 * 59.99414 * 4 2 1 7 7 N 1.31517 * 120.00461 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99695 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47292 * 90.00159 * 8 6 4 10 10 H 1.48502 * 109.47450 * 210.00079 * 8 6 4 11 11 H 1.48499 * 109.47501 * 330.00193 * 8 6 4 12 12 C 1.53005 * 109.47524 * 119.99990 * 2 1 3 13 13 N 1.46499 * 109.46847 * 300.00089 * 12 2 1 14 14 C 1.34778 * 119.99498 * 179.97438 * 13 12 2 15 15 O 1.21554 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.47854 * 119.99766 * 180.02562 * 14 13 12 17 17 C 1.39579 * 120.53018 * 0.02562 * 16 14 13 18 18 N 1.31665 * 120.71029 * 179.97438 * 17 16 14 19 19 C 1.31892 * 121.95317 * 0.02562 * 18 17 16 20 20 C 1.38895 * 120.98649 * 359.97438 * 19 18 17 21 21 N 1.40294 * 120.41030 * 180.02562 * 20 19 18 22 22 C 1.36113 * 125.94205 * 5.00637 * 21 20 19 23 23 C 1.35369 * 106.05087 * 179.97438 * 22 21 20 24 24 N 1.33774 * 106.53526 * 359.97438 * 23 22 21 25 25 N 1.28606 * 109.06313 * 359.75656 * 24 23 22 26 26 C 1.38979 * 119.17751 * 0.02562 * 20 19 18 27 27 H 1.09010 * 109.46816 * 299.99765 * 1 2 3 28 28 H 1.08992 * 109.47206 * 59.99739 * 1 2 3 29 29 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46918 * 180.02562 * 3 2 1 31 31 H 1.08992 * 109.47456 * 300.00107 * 3 2 1 32 32 H 1.08997 * 109.47133 * 60.00724 * 3 2 1 33 33 H 0.96991 * 120.00206 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47172 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.46796 * 60.00334 * 12 2 1 36 36 H 0.96997 * 120.00515 * 0.02562 * 13 12 2 37 37 H 1.08004 * 119.64141 * 359.97438 * 17 16 14 38 38 H 1.07997 * 119.50256 * 180.28205 * 19 18 17 39 39 H 1.08007 * 126.97328 * 359.97438 * 22 21 20 40 40 H 1.07995 * 126.73003 * 180.02562 * 23 22 21 41 41 H 1.07994 * 120.88712 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 6 2.0401 -0.7213 1.2493 13 7 1.5518 -0.0306 2.4454 14 6 1.8771 -0.4914 3.6695 15 8 2.5760 -1.4797 3.7809 16 6 1.3838 0.2052 4.8767 17 6 0.5802 1.3406 4.7616 18 7 0.1385 1.9634 5.8342 19 6 0.4312 1.5495 7.0518 20 6 1.2251 0.4279 7.2543 21 7 1.5284 -0.0020 8.5548 22 6 1.0345 0.5281 9.7071 23 6 1.5880 -0.1863 10.7151 24 7 2.3782 -1.1019 10.1436 25 7 2.3172 -0.9706 8.8657 26 6 1.7151 -0.2632 6.1526 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.7087 1.1615 -3.4843 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 0.9938 0.7578 2.3565 37 1 0.3178 1.7123 3.7820 38 1 0.0438 2.0880 7.9041 39 1 0.3417 1.3515 9.7987 40 1 1.4231 -0.0452 11.7730 41 1 2.3344 -1.1389 6.2781 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:34 Heat of formation + Delta-G solvation = 108.467148 kcal Electronic energy + Delta-G solvation = -25144.722478 eV Core-core repulsion = 21448.570133 eV Total energy + Delta-G solvation = -3696.152345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.85522 -40.99694 -39.13645 -36.52530 -35.56944 -33.58076 -32.89354 -31.54790 -31.19882 -30.43962 -26.30744 -25.82471 -25.44793 -25.22391 -24.31686 -22.78540 -22.19512 -20.69784 -19.29349 -18.82954 -17.55998 -17.34478 -16.96144 -16.65300 -15.91368 -15.44677 -15.20751 -15.06091 -14.81430 -14.61860 -14.23846 -13.79205 -13.50184 -13.12281 -12.95583 -12.92011 -12.29363 -12.18058 -11.87764 -11.52082 -11.50120 -11.28825 -10.94109 -10.76035 -10.56735 -10.49196 -10.25980 -10.24361 -9.90879 -9.80191 -9.74043 -9.41165 -9.36241 -8.88367 -8.64258 -8.42807 -6.08859 -4.19141 -0.14674 0.34231 1.43675 1.68776 2.14015 2.69882 3.23189 3.24699 3.32114 3.36789 3.46502 3.67279 3.80735 4.05778 4.14736 4.33734 4.35405 4.52215 4.61585 4.72765 4.83737 5.05045 5.18322 5.44977 5.52187 5.66023 5.70597 6.08679 6.19687 6.21408 6.38895 6.59871 6.70615 6.79020 6.82938 6.91442 7.16160 7.24823 7.46204 7.61872 7.76026 7.92257 8.01139 8.04467 8.27294 8.37549 8.81234 9.47224 10.92645 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.035617 B = 0.002459 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.950634 B =11382.250247 C =11976.105734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.704 5.704 14 C 0.550 3.450 15 O -0.534 6.534 16 C -0.153 4.153 17 C 0.142 3.858 18 N -0.458 5.458 19 C 0.127 3.873 20 C 0.060 3.940 21 N -0.239 5.239 22 C -0.049 4.049 23 C -0.042 4.042 24 N -0.260 5.260 25 N -0.073 5.073 26 C -0.001 4.001 27 H 0.005 0.995 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.398 0.602 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.197 0.803 40 H 0.197 0.803 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 5.368 20.776 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.354 5.354 14 C 0.334 3.666 15 O -0.413 6.413 16 C -0.159 4.159 17 C -0.016 4.016 18 N -0.165 5.165 19 C -0.033 4.033 20 C -0.034 4.034 21 N -0.027 5.027 22 C -0.197 4.197 23 C -0.197 4.197 24 N -0.126 5.126 25 N -0.051 5.051 26 C -0.029 4.029 27 H 0.024 0.976 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.234 0.766 37 H 0.192 0.808 38 H 0.188 0.812 39 H 0.214 0.786 40 H 0.214 0.786 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.374 4.393 20.071 20.821 hybrid contribution -0.240 0.134 -0.363 0.455 sum -3.614 4.527 19.708 20.542 Atomic orbital electron populations 1.21857 0.97669 0.99337 1.00149 1.18382 0.92860 0.92814 0.90458 1.21856 0.98758 0.98250 1.00150 1.20952 1.31659 1.12178 0.89763 0.92345 1.24875 0.94816 0.94890 0.98897 1.69787 1.36584 1.22653 1.23354 0.86557 0.79346 0.79389 0.82512 1.20687 1.21245 1.19882 1.21868 0.98529 0.95982 0.82802 1.46271 1.51865 1.31544 1.05755 1.17830 0.81345 0.84423 0.83005 1.90803 1.38026 1.25883 1.86549 1.21208 1.01491 0.98389 0.94784 1.23335 0.90181 0.89755 0.98364 1.67876 1.21079 1.29845 0.97709 1.22831 0.92863 0.91186 0.96446 1.18645 1.04232 0.99107 0.81421 1.44644 1.29934 1.22561 1.05605 1.23901 1.06193 1.05140 0.84439 1.23712 0.98963 0.95753 1.01317 1.75175 1.18448 1.20591 0.98430 1.78505 1.10856 1.05708 1.10065 1.21581 0.94133 0.98218 0.89001 0.97600 0.89413 0.95279 0.95268 0.89415 0.97589 0.92922 0.92131 0.92138 0.76558 0.80827 0.81236 0.78566 0.78577 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.21 0.50 -155.65 -0.08 1.13 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.73 8.01 -34.44 -0.28 -13.01 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.77 9.35 55.43 0.52 -22.25 16 8 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.13 2.56 4.50 -4.04 -0.02 2.54 16 13 N -0.70 -11.29 4.91 -61.25 -0.30 -11.59 16 14 C 0.55 8.79 7.78 -12.32 -0.10 8.70 16 15 O -0.53 -10.48 16.42 5.32 0.09 -10.40 16 16 C -0.15 -1.90 5.89 -104.84 -0.62 -2.52 16 17 C 0.14 1.47 10.71 -17.12 -0.18 1.29 16 18 N -0.46 -4.46 10.34 -12.77 -0.13 -4.59 16 19 C 0.13 1.02 10.62 -17.28 -0.18 0.84 16 20 C 0.06 0.60 6.69 -83.46 -0.56 0.04 16 21 N -0.24 -2.45 3.56 -10.41 -0.04 -2.49 16 22 C -0.05 -0.33 10.92 -16.68 -0.18 -0.51 16 23 C -0.04 -0.33 12.05 -17.73 -0.21 -0.54 16 24 N -0.26 -3.18 12.39 30.24 0.37 -2.80 16 25 N -0.07 -0.95 12.49 60.35 0.75 -0.20 16 26 C 0.00 -0.02 9.28 -38.69 -0.36 -0.37 16 27 H 0.01 0.09 6.86 -51.92 -0.36 -0.26 16 28 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 32 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.40 5.52 4.22 -40.82 -0.17 5.35 16 37 H 0.17 1.51 6.42 -52.48 -0.34 1.17 16 38 H 0.17 0.70 6.79 -52.49 -0.36 0.34 16 39 H 0.20 0.39 7.15 -52.48 -0.38 0.02 16 40 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.17 2.24 7.45 -52.49 -0.39 1.85 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -30.82 343.16 -5.47 -36.29 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.63 Total: 3.47 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.26 Total: -5.80 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 1.18 Total: -43.92 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.82 -5.47 -36.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.757 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds