Wall clock time and date at job start Tue Mar 31 2020 11:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47361 * 2 1 4 4 C 1.52998 * 109.47419 * 240.00095 * 2 1 3 5 5 O 1.45202 * 109.47421 * 119.99940 * 2 1 3 6 6 C 1.34630 * 116.99916 * 59.99637 * 5 2 1 7 7 O 1.21510 * 120.00124 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47067 * 136.05152 * 359.63378 * 8 6 5 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 O 1.42898 * 114.38988 * 139.66779 * 10 9 8 12 12 C 1.42898 * 114.00084 * 116.31163 * 11 10 9 13 13 C 1.53005 * 109.47065 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47112 * 180.02562 * 13 12 11 15 15 O 1.21212 * 119.99820 * 0.02562 * 14 13 12 16 16 O 1.34317 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.34913 * 117.00432 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99761 * 0.02562 * 17 16 14 19 19 C 1.38750 * 120.00432 * 180.02562 * 17 16 14 20 20 N 1.31442 * 119.99700 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46956 * 90.00207 * 21 19 17 23 23 H 1.48505 * 109.47164 * 209.99929 * 21 19 17 24 24 H 1.48501 * 109.47310 * 330.00139 * 21 19 17 25 25 C 1.47066 * 136.06263 * 180.02562 * 8 6 5 26 26 H 1.09001 * 109.47173 * 300.00000 * 1 2 3 27 27 H 1.09006 * 109.46940 * 60.00377 * 1 2 3 28 28 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46397 * 300.00278 * 3 2 1 31 31 H 1.08996 * 109.46866 * 59.99436 * 3 2 1 32 32 H 1.09002 * 109.47068 * 299.99434 * 4 2 1 33 33 H 1.08992 * 109.47463 * 59.99805 * 4 2 1 34 34 H 1.09005 * 109.47649 * 180.02562 * 4 2 1 35 35 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 36 36 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 37 37 H 1.09006 * 114.20377 * 272.47966 * 10 9 8 38 38 H 1.08991 * 109.47569 * 300.00262 * 12 11 10 39 39 H 1.09001 * 109.46902 * 60.00637 * 12 11 10 40 40 H 1.09004 * 109.46972 * 300.00375 * 13 12 11 41 41 H 1.08992 * 109.46881 * 59.99993 * 13 12 11 42 42 H 0.97001 * 120.00055 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.46156 * 321.64401 * 25 8 6 44 44 H 1.08994 * 113.46837 * 92.02042 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4172 9 6 2.8968 -2.3876 3.5994 10 6 2.1088 -3.4764 4.3410 11 8 2.9054 -4.3096 5.1854 12 6 2.5804 -4.2105 6.5734 13 6 3.4903 -5.1409 7.3780 14 6 3.1472 -5.0368 8.8417 15 8 2.2622 -4.2925 9.2052 16 8 3.8213 -5.7694 9.7433 17 6 3.4640 -5.6295 11.0367 18 1 2.6676 -4.9517 11.3066 19 6 4.1196 -6.3563 12.0202 20 7 5.0891 -7.1808 11.6917 21 14 3.6253 -6.1619 13.8111 22 1 2.5632 -7.1461 14.1410 23 1 4.8067 -6.3989 14.6791 24 1 3.1130 -4.7865 14.0368 25 6 1.8956 -4.0342 2.9268 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 3.9494 -2.6334 3.4586 36 1 2.7478 -1.3887 4.0093 37 1 1.1985 -3.1195 4.8228 38 1 2.7239 -3.1830 6.9077 39 1 1.5405 -4.4999 6.7246 40 1 3.3464 -6.1683 7.0436 41 1 4.5303 -4.8520 7.2268 42 1 5.5477 -7.6886 12.3793 43 1 0.8952 -4.4355 2.7645 44 1 2.6811 -4.7184 2.6060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494712256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:36 Heat of formation + Delta-G solvation = -164.428195 kcal Electronic energy + Delta-G solvation = -25697.456823 eV Core-core repulsion = 21617.576425 eV Total energy + Delta-G solvation = -4079.880397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18359 -39.89040 -39.05733 -37.36913 -36.47943 -35.24368 -34.33569 -32.19340 -31.36985 -29.19984 -27.76693 -27.72093 -26.42232 -25.67138 -23.63047 -22.97145 -21.23414 -19.84789 -19.47892 -18.20041 -17.79859 -17.50857 -17.00251 -16.50154 -16.06422 -15.93403 -15.51669 -14.88284 -14.75879 -14.55444 -14.43946 -14.21791 -14.09873 -13.65087 -13.48960 -12.95621 -12.84886 -12.60314 -12.37998 -12.29653 -12.24858 -12.20526 -11.99870 -11.74300 -11.62150 -11.54805 -11.24770 -11.12976 -10.96150 -10.69470 -10.45975 -10.40859 -10.34395 -9.83887 -9.58735 -9.15343 -9.10542 -8.60803 -6.43784 -4.12132 1.59958 2.54119 3.08938 3.15459 3.21854 3.31493 3.48492 3.51276 3.98264 4.04347 4.35389 4.40214 4.50380 4.54177 4.68019 4.86475 4.92393 5.08418 5.11154 5.15223 5.18163 5.23577 5.27394 5.28970 5.33125 5.35471 5.39776 5.47859 5.50024 5.53148 5.64403 5.71056 5.93764 5.97163 6.12451 6.13786 6.18201 6.72172 7.05833 7.35992 7.36716 7.91913 8.02642 8.65875 9.04769 9.80693 10.74054 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.041334 B = 0.001778 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.242390 B =15746.827030 C =15971.483394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.360 6.360 6 C 0.687 3.313 7 O -0.566 6.566 8 N -0.634 5.634 9 C 0.085 3.915 10 C 0.056 3.944 11 O -0.366 6.366 12 C 0.078 3.922 13 C -0.103 4.103 14 C 0.401 3.599 15 O -0.561 6.561 16 O -0.212 6.212 17 C -0.384 4.384 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.864 5.864 21 Si 0.944 3.056 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C 0.128 3.872 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.270 0.730 43 H 0.088 0.912 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 12.646 -22.825 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.275 6.275 6 C 0.443 3.557 7 O -0.455 6.455 8 N -0.378 5.378 9 C -0.038 4.038 10 C -0.003 4.003 11 O -0.284 6.284 12 C 0.001 3.999 13 C -0.141 4.141 14 C 0.247 3.753 15 O -0.460 6.460 16 O -0.118 6.118 17 C -0.460 4.460 18 H 0.114 0.886 19 C -0.162 4.162 20 N -0.501 5.501 21 Si 0.769 3.231 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.191 1.191 25 C 0.006 3.994 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.974 12.582 -23.178 26.837 hybrid contribution -0.282 0.239 0.844 0.921 sum -5.256 12.821 -22.334 26.283 Atomic orbital electron populations 1.22526 0.93905 1.05092 1.02578 1.22118 0.94470 0.91564 0.82017 1.21861 1.02323 0.92377 1.03197 1.22518 1.01618 1.03471 0.96464 1.86322 1.71328 1.23326 1.46481 1.17077 0.78569 0.80331 0.79685 1.90910 1.41801 1.70744 1.42091 1.47644 1.53565 1.14846 1.21728 1.23651 0.97006 1.00843 0.82319 1.23746 0.94962 0.91550 0.90073 1.87848 1.58921 1.63871 1.17734 1.22320 0.98851 0.99859 0.78831 1.20836 1.01676 1.02067 0.89483 1.22850 0.82424 0.81147 0.88853 1.90561 1.33106 1.40519 1.81772 1.83867 1.54159 1.56246 1.17561 1.21228 1.19925 1.26531 0.78288 0.88622 1.25350 0.95473 0.95294 1.00105 1.69994 1.21239 1.24451 1.34395 0.85666 0.78156 0.79179 0.80134 1.19867 1.20312 1.19109 1.23224 1.03726 0.83086 0.89334 0.92075 0.91057 0.89405 0.91412 0.90045 0.91388 0.89437 0.91037 0.92125 0.88436 0.89660 0.87357 0.91936 0.91909 0.88172 0.88186 0.92018 0.89320 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.37 37.16 0.31 -1.26 16 2 C 0.13 1.20 1.13 -90.62 -0.10 1.09 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 5 O -0.36 -4.07 9.91 -40.30 -0.40 -4.47 16 6 C 0.69 8.60 8.26 54.06 0.45 9.05 16 7 O -0.57 -8.08 12.66 -19.28 -0.24 -8.33 16 8 N -0.63 -6.94 3.69 -191.10 -0.71 -7.64 16 9 C 0.09 0.78 8.50 -8.51 -0.07 0.71 16 10 C 0.06 0.55 4.66 -26.21 -0.12 0.43 16 11 O -0.37 -4.43 10.40 -35.23 -0.37 -4.80 16 12 C 0.08 1.10 5.07 37.16 0.19 1.29 16 13 C -0.10 -1.74 6.18 -27.88 -0.17 -1.91 16 14 C 0.40 9.45 7.91 36.00 0.28 9.73 16 15 O -0.56 -14.36 15.22 -19.05 -0.29 -14.65 16 16 O -0.21 -5.94 9.75 -20.70 -0.20 -6.14 16 17 C -0.38 -11.19 9.64 30.92 0.30 -10.89 16 18 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16 19 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 20 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C 0.13 1.21 8.46 -8.50 -0.07 1.14 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.96 5.88 -51.93 -0.31 0.65 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 0.97 7.88 -51.93 -0.41 0.57 16 38 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -34.34 373.91 -6.16 -40.50 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.85 Total: -0.45 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 1.53 Total: 8.66 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.05 Total: -31.96 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.50 Total: -38.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.34 -6.16 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494712256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.932 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds