Wall clock time and date at job start Tue Mar 31 2020 11:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47361 * 2 1 4 4 C 1.52998 * 109.47419 * 240.00095 * 2 1 3 5 5 O 1.45202 * 109.47421 * 119.99940 * 2 1 3 6 6 C 1.34630 * 116.99916 * 59.99637 * 5 2 1 7 7 O 1.21510 * 120.00124 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47067 * 136.05152 * 359.63378 * 8 6 5 10 10 C 1.53497 * 87.98534 * 153.13820 * 9 8 6 11 11 O 1.42898 * 114.38988 * 139.66779 * 10 9 8 12 12 C 1.42898 * 114.00084 * 116.31163 * 11 10 9 13 13 C 1.53005 * 109.47065 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47112 * 180.02562 * 13 12 11 15 15 O 1.21212 * 119.99820 * 0.02562 * 14 13 12 16 16 O 1.34317 * 120.00205 * 179.97438 * 14 13 12 17 17 C 1.34913 * 117.00432 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99761 * 0.02562 * 17 16 14 19 19 C 1.38750 * 120.00432 * 180.02562 * 17 16 14 20 20 N 1.31442 * 119.99700 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00280 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46956 * 90.00207 * 21 19 17 23 23 H 1.48505 * 109.47164 * 209.99929 * 21 19 17 24 24 H 1.48501 * 109.47310 * 330.00139 * 21 19 17 25 25 C 1.47066 * 136.06263 * 180.02562 * 8 6 5 26 26 H 1.09001 * 109.47173 * 300.00000 * 1 2 3 27 27 H 1.09006 * 109.46940 * 60.00377 * 1 2 3 28 28 H 1.09006 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46397 * 300.00278 * 3 2 1 31 31 H 1.08996 * 109.46866 * 59.99436 * 3 2 1 32 32 H 1.09002 * 109.47068 * 299.99434 * 4 2 1 33 33 H 1.08992 * 109.47463 * 59.99805 * 4 2 1 34 34 H 1.09005 * 109.47649 * 180.02562 * 4 2 1 35 35 H 1.09007 * 113.46858 * 267.91303 * 9 8 6 36 36 H 1.08993 * 113.47208 * 38.35639 * 9 8 6 37 37 H 1.09006 * 114.20377 * 272.47966 * 10 9 8 38 38 H 1.08991 * 109.47569 * 300.00262 * 12 11 10 39 39 H 1.09001 * 109.46902 * 60.00637 * 12 11 10 40 40 H 1.09004 * 109.46972 * 300.00375 * 13 12 11 41 41 H 1.08992 * 109.46881 * 59.99993 * 13 12 11 42 42 H 0.97001 * 120.00055 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.46156 * 321.64401 * 25 8 6 44 44 H 1.08994 * 113.46837 * 92.02042 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5037 8 7 2.0672 -2.6654 2.4172 9 6 2.8968 -2.3876 3.5994 10 6 2.1088 -3.4764 4.3410 11 8 2.9054 -4.3096 5.1854 12 6 2.5804 -4.2105 6.5734 13 6 3.4903 -5.1409 7.3780 14 6 3.1472 -5.0368 8.8417 15 8 2.2622 -4.2925 9.2052 16 8 3.8213 -5.7694 9.7433 17 6 3.4640 -5.6295 11.0367 18 1 2.6676 -4.9517 11.3066 19 6 4.1196 -6.3563 12.0202 20 7 5.0891 -7.1808 11.6917 21 14 3.6253 -6.1619 13.8111 22 1 2.5632 -7.1461 14.1410 23 1 4.8067 -6.3989 14.6791 24 1 3.1130 -4.7865 14.0368 25 6 1.8956 -4.0342 2.9268 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 3.9494 -2.6334 3.4586 36 1 2.7478 -1.3887 4.0093 37 1 1.1985 -3.1195 4.8228 38 1 2.7239 -3.1830 6.9077 39 1 1.5405 -4.4999 6.7246 40 1 3.3464 -6.1683 7.0436 41 1 4.5303 -4.8520 7.2268 42 1 5.5477 -7.6886 12.3793 43 1 0.8952 -4.4355 2.7645 44 1 2.6811 -4.7184 2.6060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494712256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:35 Heat of formation + Delta-G solvation = -186.974181 kcal Electronic energy + Delta-G solvation = -25698.434490 eV Core-core repulsion = 21617.576425 eV Total energy + Delta-G solvation = -4080.858065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03040 -41.07191 -40.65009 -38.36990 -37.54990 -37.08923 -35.06980 -34.29839 -32.73233 -30.12937 -28.38694 -28.32021 -27.65904 -27.17550 -25.07704 -23.86002 -22.05813 -21.52610 -20.32616 -19.88329 -19.08033 -18.70551 -17.93819 -17.81658 -17.29747 -17.06061 -16.52868 -16.33621 -16.25397 -15.99610 -15.61209 -15.29635 -14.97725 -14.71397 -14.36055 -14.15363 -13.84864 -13.57023 -13.38010 -13.35481 -13.24770 -13.02498 -12.95331 -12.89766 -12.85206 -12.52913 -12.36183 -12.30568 -12.27328 -12.13873 -11.99738 -11.94224 -11.44076 -11.21120 -11.07149 -10.69206 -10.54432 -9.98835 -8.52934 -6.32908 0.79485 1.31854 1.36117 1.53147 1.61823 1.65435 2.02118 2.35092 2.70658 2.98821 3.14745 3.26454 3.71454 3.76596 3.77972 3.83981 3.92043 4.08804 4.13176 4.19853 4.41921 4.44382 4.51358 4.57124 4.59820 4.60965 4.66518 4.74426 4.79709 4.84822 4.85696 4.85987 4.86623 4.95202 5.10831 5.20195 5.25604 5.29916 5.41857 5.84176 6.07100 6.49777 6.66796 6.92475 7.12934 7.76680 8.67728 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.041334 B = 0.001778 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.242390 B =15746.827030 C =15971.483394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.366 6.366 6 C 0.680 3.320 7 O -0.591 6.591 8 N -0.639 5.639 9 C 0.089 3.911 10 C 0.058 3.942 11 O -0.365 6.365 12 C 0.089 3.911 13 C -0.093 4.093 14 C 0.401 3.599 15 O -0.583 6.583 16 O -0.245 6.245 17 C -0.421 4.421 18 H 0.084 0.916 19 C -0.005 4.005 20 N -0.903 5.903 21 Si 1.018 2.982 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.263 1.263 25 C 0.127 3.873 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.279 0.721 43 H 0.092 0.908 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 13.694 -23.130 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.281 6.281 6 C 0.437 3.563 7 O -0.482 6.482 8 N -0.383 5.383 9 C -0.034 4.034 10 C -0.002 4.002 11 O -0.283 6.283 12 C 0.013 3.987 13 C -0.131 4.131 14 C 0.249 3.751 15 O -0.482 6.482 16 O -0.153 6.153 17 C -0.497 4.497 18 H 0.101 0.899 19 C -0.205 4.205 20 N -0.540 5.540 21 Si 0.836 3.164 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.187 1.187 25 C 0.006 3.994 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.961 13.640 -23.506 27.626 hybrid contribution -0.312 -0.037 0.780 0.841 sum -5.272 13.603 -22.727 27.006 Atomic orbital electron populations 1.22478 0.93843 1.03617 1.03722 1.22502 0.94753 0.92772 0.81386 1.21888 1.02424 0.90491 1.04411 1.22469 1.01627 1.02115 0.97395 1.86331 1.71400 1.22724 1.47643 1.17270 0.78493 0.80725 0.79792 1.90898 1.42905 1.71320 1.43057 1.47758 1.53499 1.15397 1.21651 1.23713 0.97144 1.01161 0.81353 1.23814 0.95149 0.91487 0.89700 1.87821 1.59390 1.64525 1.16583 1.22069 0.97910 0.98981 0.79762 1.20903 1.03271 1.03960 0.84963 1.24122 0.80976 0.79224 0.90765 1.90533 1.33870 1.41057 1.82704 1.83890 1.55633 1.57925 1.17835 1.21424 1.20888 1.27833 0.79510 0.89852 1.26538 0.94943 0.94230 1.04823 1.70076 1.22251 1.25231 1.36459 0.84623 0.78577 0.79431 0.73726 1.18547 1.18562 1.18723 1.23309 1.04335 0.82828 0.88931 0.92027 0.88802 0.92087 0.91257 0.87676 0.91315 0.92133 0.88774 0.91995 0.87618 0.88745 0.86461 0.91951 0.92098 0.86483 0.86375 0.91206 0.88952 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.37 71.98 0.60 -2.33 16 2 C 0.12 2.04 1.13 -10.79 -0.01 2.02 16 3 C -0.14 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 5 O -0.37 -8.07 9.91 -55.40 -0.55 -8.62 16 6 C 0.68 16.93 8.26 129.79 1.07 18.00 16 7 O -0.59 -17.19 12.66 19.81 0.25 -16.94 16 8 N -0.64 -13.44 3.69 -989.42 -3.65 -17.09 16 9 C 0.09 1.50 8.50 83.18 0.71 2.20 16 10 C 0.06 1.02 4.66 30.93 0.14 1.17 16 11 O -0.37 -8.09 10.40 -148.98 -1.55 -9.63 16 12 C 0.09 2.40 5.07 71.98 0.36 2.76 16 13 C -0.09 -3.04 6.18 29.85 0.18 -2.86 16 14 C 0.40 19.02 7.91 71.23 0.56 19.58 16 15 O -0.58 -30.10 15.22 20.77 0.32 -29.79 16 16 O -0.24 -14.03 9.75 14.89 0.15 -13.89 16 17 C -0.42 -25.08 9.64 67.94 0.66 -24.42 16 18 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 19 C -0.01 -0.28 5.49 84.87 0.47 0.18 16 20 N -0.90 -52.78 13.67 21.62 0.30 -52.49 16 21 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 C 0.13 2.25 8.46 83.18 0.70 2.96 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.35 5.88 -2.38 -0.01 1.34 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.33 5.88 -2.39 -0.01 1.32 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 1.91 7.88 -2.38 -0.02 1.89 16 38 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 41 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.71 373.91 4.97 -70.74 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.99 Total: 16.72 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.69 Total: 16.21 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -3.35 Total: -69.58 kcal Atomic # 8 Polarization: -77.47 SS G_CDS: -1.39 Total: -78.86 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.71 4.97 -70.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494712256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.234 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds