Wall clock time and date at job start Tue Mar 31 2020 10:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53008 * 114.57091 * 272.66446 * 10 9 8 12 12 O 1.42894 * 114.08792 * 139.78058 * 10 9 8 13 13 C 1.42904 * 113.99856 * 86.56043 * 12 10 9 14 14 C 1.50702 * 109.47002 * 179.97438 * 13 12 10 15 15 O 1.21207 * 119.99881 * 0.02562 * 14 13 12 16 16 O 1.34309 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.34926 * 117.00122 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99362 * 0.02562 * 17 16 14 19 19 C 1.38745 * 120.00218 * 180.02562 * 17 16 14 20 20 N 1.31439 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47067 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47588 * 119.99509 * 21 19 17 24 24 H 1.48506 * 109.46894 * 239.99955 * 21 19 17 25 25 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 36 36 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 37 37 H 1.09001 * 109.46800 * 153.67337 * 11 10 9 38 38 H 1.09000 * 109.46706 * 273.67186 * 11 10 9 39 39 H 1.08997 * 109.47378 * 33.67156 * 11 10 9 40 40 H 1.09000 * 109.46951 * 299.99941 * 13 12 10 41 41 H 1.08994 * 109.47258 * 60.00344 * 13 12 10 42 42 H 0.97004 * 120.00222 * 180.02562 * 20 19 17 43 43 H 1.08998 * 113.46755 * 321.86921 * 25 8 6 44 44 H 1.09004 * 113.46677 * 92.30306 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8243 -2.8525 -5.0894 12 8 2.9042 -2.3378 -6.3225 13 6 3.0958 -3.7391 -6.5267 14 6 3.9474 -3.9566 -7.7509 15 8 4.3507 -3.0058 -8.3853 16 8 4.2604 -5.2039 -8.1383 17 6 5.0262 -5.3285 -9.2422 18 1 5.3590 -4.4474 -9.7707 19 6 5.3863 -6.5884 -9.6982 20 7 4.9817 -7.6607 -9.0546 21 14 6.4472 -6.7608 -11.2259 22 1 6.7674 -5.4131 -11.7609 23 1 7.7060 -7.4674 -10.8774 24 1 5.7111 -7.5391 -12.2545 25 6 1.8960 -0.5168 -4.9572 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 3.9504 -1.6754 -4.0134 36 1 2.7529 -2.7752 -3.2054 37 1 0.1155 -2.5123 -5.8445 38 1 1.0603 -3.9029 -5.2596 39 1 0.3846 -2.7347 -4.0991 40 1 3.5930 -4.1684 -5.6569 41 1 2.1285 -4.2214 -6.6672 42 1 5.2337 -8.5416 -9.3732 43 1 0.8962 -0.1734 -5.2231 44 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495859707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:46 Heat of formation + Delta-G solvation = -153.708230 kcal Electronic energy + Delta-G solvation = -26623.529766 eV Core-core repulsion = 22544.114221 eV Total energy + Delta-G solvation = -4079.415545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26552 -40.12936 -38.96463 -37.22988 -36.29833 -34.95875 -34.27227 -32.17968 -30.70434 -28.57520 -27.72314 -27.67163 -27.29053 -26.39061 -25.01405 -22.37103 -20.57028 -20.04756 -19.21297 -18.12966 -17.76479 -17.24353 -16.93540 -16.55781 -16.02324 -15.84496 -15.32386 -15.16127 -14.63997 -14.39325 -14.35250 -14.11915 -13.78571 -13.68507 -13.40215 -13.06516 -12.79516 -12.57304 -12.33615 -12.22094 -12.20688 -12.19684 -11.99143 -11.83219 -11.67944 -11.59396 -11.49278 -11.20960 -10.70551 -10.63525 -10.43078 -10.41195 -10.29355 -9.84168 -9.61555 -9.05123 -8.99322 -8.61216 -6.44414 -4.12485 1.66416 2.61227 3.08019 3.10984 3.22033 3.32430 3.46324 3.54144 3.92817 4.12288 4.38410 4.41202 4.45395 4.59183 4.65230 4.90948 4.92137 5.07726 5.15840 5.20562 5.22959 5.29557 5.32018 5.36328 5.37974 5.44800 5.50250 5.55013 5.58800 5.61132 5.62823 5.63434 5.69409 5.95613 5.98872 6.02498 6.24668 6.52523 7.17303 7.37628 7.43814 7.91845 8.09825 8.68101 9.04666 9.79620 10.73596 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.002217 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.654694 B =12623.938034 C =12850.305528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.140 4.140 5 O -0.360 6.360 6 C 0.687 3.313 7 O -0.567 6.567 8 N -0.630 5.630 9 C 0.080 3.920 10 C 0.075 3.925 11 C -0.160 4.160 12 O -0.335 6.335 13 C 0.078 3.922 14 C 0.398 3.602 15 O -0.536 6.536 16 O -0.214 6.214 17 C -0.380 4.380 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.866 5.866 21 Si 0.944 3.056 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.269 0.731 43 H 0.092 0.908 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 10.992 18.842 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.241 4.241 4 C -0.198 4.198 5 O -0.275 6.275 6 C 0.444 3.556 7 O -0.456 6.456 8 N -0.374 5.374 9 C -0.043 4.043 10 C 0.033 3.967 11 C -0.217 4.217 12 O -0.253 6.253 13 C 0.001 3.999 14 C 0.243 3.757 15 O -0.432 6.432 16 O -0.121 6.121 17 C -0.456 4.456 18 H 0.115 0.885 19 C -0.162 4.162 20 N -0.503 5.503 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.202 1.202 25 C 0.025 3.975 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.615 11.558 18.810 23.699 hybrid contribution 0.499 -0.277 -0.415 0.706 sum -8.116 11.280 18.395 23.054 Atomic orbital electron populations 1.22525 0.93936 1.02994 1.04611 1.22108 0.94438 0.92259 0.81351 1.22519 1.01648 0.95332 1.04591 1.21859 1.02351 1.01168 0.94382 1.86323 1.71359 1.56422 1.13354 1.17056 0.78598 0.80241 0.79718 1.90907 1.41865 1.26410 1.86426 1.47625 1.53307 1.32486 1.03967 1.23889 0.96901 0.88400 0.95154 1.23052 0.91954 0.95766 0.85908 1.22038 0.95569 1.00637 1.03456 1.88053 1.69873 1.22634 1.44704 1.21595 0.99641 0.82492 0.96206 1.22621 0.82913 0.83447 0.86719 1.90591 1.53837 1.42926 1.55822 1.83839 1.59498 1.26284 1.42520 1.21283 1.28176 0.94296 1.01888 0.88495 1.25336 0.97643 0.94011 0.99214 1.69996 1.43234 0.98028 1.39046 0.85593 0.78883 0.78939 0.79721 1.18897 1.20153 1.20156 1.22985 1.03910 0.95052 0.75531 0.89389 0.92107 0.91101 0.91076 0.92121 0.89418 0.91389 0.91408 0.90084 0.88302 0.89537 0.90496 0.90413 0.90943 0.89991 0.89588 0.92084 0.89001 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 2 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 3 C -0.18 -1.68 8.37 37.16 0.31 -1.37 16 4 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 5 O -0.36 -4.32 9.91 -40.29 -0.40 -4.72 16 6 C 0.69 9.13 8.26 54.06 0.45 9.58 16 7 O -0.57 -8.45 12.66 -19.28 -0.24 -8.70 16 8 N -0.63 -7.66 3.50 -190.90 -0.67 -8.32 16 9 C 0.08 0.88 8.05 -8.37 -0.07 0.82 16 10 C 0.07 0.89 1.56 -89.98 -0.14 0.75 16 11 C -0.16 -1.61 8.96 37.16 0.33 -1.27 16 12 O -0.34 -5.43 9.88 -55.15 -0.54 -5.98 16 13 C 0.08 1.33 5.88 36.01 0.21 1.55 16 14 C 0.40 9.65 7.98 36.01 0.29 9.94 16 15 O -0.54 -14.61 15.74 -25.78 -0.41 -15.02 16 16 O -0.21 -5.96 9.75 -20.71 -0.20 -6.16 16 17 C -0.38 -11.09 9.64 30.92 0.30 -10.79 16 18 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 19 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 20 N -0.87 -24.87 13.67 55.48 0.76 -24.12 16 21 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 22 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.15 1.68 8.04 -8.51 -0.07 1.61 16 26 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.75 6.12 -51.93 -0.32 0.44 16 39 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 40 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.28 6.36 -51.93 -0.33 0.95 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 43 H 0.09 0.97 8.12 -51.93 -0.42 0.54 16 44 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 369.71 15.07 5.57 5.57 Total: -1.00 -34.97 369.71 -5.76 -40.74 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.66 Total: -0.37 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 2.05 Total: 11.09 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.09 Total: -32.44 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.80 Total: -40.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.97 -5.76 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495859707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.973 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds