Wall clock time and date at job start Tue Mar 31 2020 10:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47068 * 136.05505 * 359.62674 * 8 6 5 10 10 C 1.53755 * 87.88762 * 152.96564 * 9 8 6 11 11 C 1.53008 * 114.57091 * 272.66446 * 10 9 8 12 12 O 1.42894 * 114.08792 * 139.78058 * 10 9 8 13 13 C 1.42904 * 113.99856 * 86.56043 * 12 10 9 14 14 C 1.50702 * 109.47002 * 179.97438 * 13 12 10 15 15 O 1.21207 * 119.99881 * 0.02562 * 14 13 12 16 16 O 1.34309 * 119.99971 * 179.97438 * 14 13 12 17 17 C 1.34926 * 117.00122 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99362 * 0.02562 * 17 16 14 19 19 C 1.38745 * 120.00218 * 180.02562 * 17 16 14 20 20 N 1.31439 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00161 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47067 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47588 * 119.99509 * 21 19 17 24 24 H 1.48506 * 109.46894 * 239.99955 * 21 19 17 25 25 C 1.47068 * 136.05954 * 179.97438 * 8 6 5 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.09003 * 113.46695 * 267.69823 * 9 8 6 36 36 H 1.09004 * 113.46693 * 38.13532 * 9 8 6 37 37 H 1.09001 * 109.46800 * 153.67337 * 11 10 9 38 38 H 1.09000 * 109.46706 * 273.67186 * 11 10 9 39 39 H 1.08997 * 109.47378 * 33.67156 * 11 10 9 40 40 H 1.09000 * 109.46951 * 299.99941 * 13 12 10 41 41 H 1.08994 * 109.47258 * 60.00344 * 13 12 10 42 42 H 0.97004 * 120.00222 * 180.02562 * 20 19 17 43 43 H 1.08998 * 113.46755 * 321.86921 * 25 8 6 44 44 H 1.09004 * 113.46677 * 92.30306 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.8986 -1.9218 -3.8677 10 6 2.1052 -2.0207 -5.1810 11 6 0.8243 -2.8525 -5.0894 12 8 2.9042 -2.3378 -6.3225 13 6 3.0958 -3.7391 -6.5267 14 6 3.9474 -3.9566 -7.7509 15 8 4.3507 -3.0058 -8.3853 16 8 4.2604 -5.2039 -8.1383 17 6 5.0262 -5.3285 -9.2422 18 1 5.3590 -4.4474 -9.7707 19 6 5.3863 -6.5884 -9.6982 20 7 4.9817 -7.6607 -9.0546 21 14 6.4472 -6.7608 -11.2259 22 1 6.7674 -5.4131 -11.7609 23 1 7.7060 -7.4674 -10.8774 24 1 5.7111 -7.5391 -12.2545 25 6 1.8960 -0.5168 -4.9572 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 3.9504 -1.6754 -4.0134 36 1 2.7529 -2.7752 -3.2054 37 1 0.1155 -2.5123 -5.8445 38 1 1.0603 -3.9029 -5.2596 39 1 0.3846 -2.7347 -4.0991 40 1 3.5930 -4.1684 -5.6569 41 1 2.1285 -4.2214 -6.6672 42 1 5.2337 -8.5416 -9.3732 43 1 0.8962 -0.1734 -5.2231 44 1 2.6832 0.1002 -5.3904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495859707.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:45 Heat of formation + Delta-G solvation = -176.552476 kcal Electronic energy + Delta-G solvation = -26624.520367 eV Core-core repulsion = 22544.114221 eV Total energy + Delta-G solvation = -4080.406146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22412 -41.22026 -40.77402 -38.35771 -37.52041 -36.84543 -35.06520 -34.30145 -31.67585 -29.96385 -28.39269 -28.37369 -28.30734 -27.34236 -26.96629 -23.31314 -22.19249 -21.15669 -20.17253 -19.85643 -19.07604 -18.60945 -18.06459 -17.76357 -17.27282 -17.03779 -16.82703 -16.36930 -16.19377 -15.68511 -15.48324 -15.30691 -14.94556 -14.61509 -14.43435 -14.22991 -13.96008 -13.57901 -13.35824 -13.24638 -13.13792 -13.03579 -12.96091 -12.88900 -12.82371 -12.80540 -12.49186 -12.37973 -12.32076 -12.17589 -11.99662 -11.67451 -11.43270 -11.23319 -10.96665 -10.73960 -10.68212 -10.00939 -8.53814 -6.33394 0.74840 1.29798 1.35728 1.52760 1.60899 1.62643 1.87769 2.31875 2.66250 2.93822 2.97717 3.30463 3.52320 3.73112 3.78274 3.90374 3.92952 4.05264 4.10845 4.27268 4.36755 4.41634 4.50320 4.52809 4.59652 4.61058 4.70188 4.74822 4.75583 4.79433 4.81254 4.86274 4.86785 5.11664 5.15249 5.17747 5.26717 5.31079 5.41956 5.83372 5.98751 6.47609 6.66773 6.91914 7.12419 7.74106 8.66722 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033419 B = 0.002217 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.654694 B =12623.938034 C =12850.305528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.180 4.180 4 C -0.135 4.135 5 O -0.365 6.365 6 C 0.683 3.317 7 O -0.588 6.588 8 N -0.632 5.632 9 C 0.083 3.917 10 C 0.075 3.925 11 C -0.156 4.156 12 O -0.359 6.359 13 C 0.092 3.908 14 C 0.394 3.606 15 O -0.573 6.573 16 O -0.238 6.238 17 C -0.419 4.419 18 H 0.080 0.920 19 C -0.002 4.002 20 N -0.900 5.900 21 Si 1.016 2.984 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.260 1.260 25 C 0.143 3.857 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.280 0.720 43 H 0.100 0.900 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 10.356 20.090 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.237 4.237 4 C -0.192 4.192 5 O -0.280 6.280 6 C 0.440 3.560 7 O -0.479 6.479 8 N -0.375 5.375 9 C -0.039 4.039 10 C 0.035 3.965 11 C -0.213 4.213 12 O -0.277 6.277 13 C 0.015 3.985 14 C 0.241 3.759 15 O -0.470 6.470 16 O -0.147 6.147 17 C -0.495 4.495 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.537 5.537 21 Si 0.835 3.165 22 H -0.191 1.191 23 H -0.184 1.184 24 H -0.184 1.184 25 C 0.022 3.978 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.856 10.917 20.091 24.521 hybrid contribution 0.512 0.034 -0.697 0.866 sum -8.344 10.950 19.394 23.783 Atomic orbital electron populations 1.22474 0.93628 1.03079 1.04402 1.22511 0.94903 0.92645 0.81335 1.22478 1.01545 0.95299 1.04387 1.21888 1.02347 1.01295 0.93692 1.86335 1.71421 1.56767 1.13495 1.17201 0.78446 0.80083 0.80231 1.90900 1.42847 1.27371 1.86822 1.47655 1.53231 1.32699 1.03912 1.23910 0.96559 0.88622 0.94856 1.23229 0.92379 0.96136 0.84795 1.22043 0.94528 1.00551 1.04191 1.88016 1.71092 1.21893 1.46722 1.21591 0.99689 0.83725 0.93468 1.24045 0.82065 0.81930 0.87851 1.90556 1.55256 1.43694 1.57516 1.83853 1.60046 1.28294 1.42520 1.21416 1.30230 0.94599 1.03256 0.90209 1.26480 0.98355 0.93027 1.02346 1.70060 1.44098 0.98789 1.40750 0.84583 0.77437 0.78976 0.75463 1.19090 1.18389 1.18406 1.23045 1.04369 0.94986 0.75434 0.92040 0.91823 0.88807 0.88696 0.92190 0.92145 0.91147 0.91433 0.87639 0.88492 0.87737 0.90072 0.89686 0.90024 0.87003 0.86748 0.91105 0.88147 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.37 71.98 0.60 -2.36 16 2 C 0.12 2.13 1.13 -10.79 -0.01 2.12 16 3 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 4 C -0.14 -1.51 8.85 71.98 0.64 -0.88 16 5 O -0.37 -8.43 9.91 -55.38 -0.55 -8.98 16 6 C 0.68 17.88 8.26 129.79 1.07 18.95 16 7 O -0.59 -17.72 12.66 19.80 0.25 -17.47 16 8 N -0.63 -14.82 3.50 -988.76 -3.46 -18.27 16 9 C 0.08 1.72 8.05 83.27 0.67 2.39 16 10 C 0.08 1.68 1.56 -10.38 -0.02 1.67 16 11 C -0.16 -2.79 8.96 71.98 0.65 -2.15 16 12 O -0.36 -11.29 9.88 -129.94 -1.28 -12.58 16 13 C 0.09 3.03 5.88 71.24 0.42 3.45 16 14 C 0.39 19.34 7.98 71.24 0.57 19.91 16 15 O -0.57 -32.08 15.74 27.22 0.43 -31.65 16 16 O -0.24 -13.58 9.75 14.83 0.14 -13.44 16 17 C -0.42 -25.07 9.64 67.94 0.66 -24.42 16 18 H 0.08 4.91 6.86 -2.91 -0.02 4.89 16 19 C 0.00 -0.09 5.49 84.87 0.47 0.38 16 20 N -0.90 -51.69 13.67 21.62 0.30 -51.40 16 21 Si 1.02 42.75 29.55 68.60 2.03 44.78 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 C 0.14 3.19 8.04 83.17 0.67 3.86 16 26 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.10 1.79 8.13 -2.39 -0.02 1.77 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.41 6.12 -2.39 -0.01 1.39 16 39 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 40 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.11 3.15 6.36 -2.39 -0.02 3.13 16 42 H 0.28 14.50 8.31 -92.71 -0.77 13.72 16 43 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -77.87 369.71 5.84 -72.04 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.00 Total: 16.55 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.98 Total: 20.41 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -3.16 Total: -69.67 kcal Atomic # 8 Polarization: -83.10 SS G_CDS: -1.01 Total: -84.11 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.87 5.84 -72.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495859707.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.515 kcal (2) G-P(sol) polarization free energy of solvation -77.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds