Wall clock time and date at job start Tue Mar 31 2020 11:23:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52995 * 109.47388 * 2 1
4 4 H 1.09000 * 109.47335 * 305.55231 * 3 2 1
5 5 C 1.50694 * 109.47129 * 185.55228 * 3 2 1
6 6 H 1.08002 * 120.00097 * 245.60083 * 5 3 2
7 7 C 1.37880 * 120.00016 * 65.60462 * 5 3 2
8 8 N 1.31515 * 119.99782 * 196.28577 * 7 5 3
9 9 Si 1.86796 * 119.99899 * 16.29178 * 7 5 3
10 10 H 1.48502 * 109.46971 * 179.97438 * 9 7 5
11 11 H 1.48499 * 109.47120 * 299.99487 * 9 7 5
12 12 H 1.48492 * 109.47334 * 59.99917 * 9 7 5
13 13 N 1.46505 * 109.46905 * 65.55075 * 3 2 1
14 14 C 1.34776 * 120.00032 * 275.00018 * 13 3 2
15 15 O 1.21587 * 119.99746 * 0.02562 * 14 13 3
16 16 N 1.34779 * 119.99966 * 180.02562 * 14 13 3
17 17 C 1.39431 * 120.00154 * 180.02562 * 16 14 13
18 18 C 1.36077 * 126.28009 * 0.02562 * 17 16 14
19 19 C 1.39818 * 107.87761 * 179.97438 * 18 17 16
20 20 N 1.30834 * 108.50191 * 359.97438 * 19 18 17
21 21 N 1.36170 * 126.28493 * 179.71052 * 17 16 14
22 22 C 1.39755 * 126.11317 * 0.02562 * 21 17 16
23 23 C 1.38965 * 119.68797 * 154.73231 * 22 21 17
24 24 C 1.38401 * 119.10696 * 179.73313 * 23 22 21
25 25 C 1.38808 * 118.48386 * 0.52071 * 24 23 22
26 26 C 1.38114 * 119.29939 * 359.73703 * 25 24 23
27 27 N 1.31907 * 120.84037 * 359.97438 * 26 25 24
28 28 H 1.08991 * 109.46932 * 300.00021 * 1 2 3
29 29 H 1.09000 * 109.46819 * 60.00253 * 1 2 3
30 30 H 1.09005 * 109.47106 * 179.97438 * 1 2 3
31 31 H 1.09005 * 109.47191 * 239.99455 * 2 1 3
32 32 H 1.09001 * 109.46746 * 120.00526 * 2 1 3
33 33 H 0.96997 * 120.00672 * 354.83689 * 8 7 5
34 34 H 0.97002 * 119.99353 * 95.00207 * 13 3 2
35 35 H 0.97002 * 119.99419 * 359.97438 * 16 14 13
36 36 H 1.08002 * 126.06171 * 359.93695 * 18 17 16
37 37 H 1.08006 * 125.75081 * 179.97438 * 19 18 17
38 38 H 1.08000 * 120.44753 * 359.97438 * 23 22 21
39 39 H 1.08000 * 120.76164 * 180.28090 * 24 23 22
40 40 H 1.07998 * 120.35214 * 179.71383 * 25 24 23
41 41 H 1.07996 * 119.58142 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5979 1.9842 -0.8361
5 6 3.5407 1.4446 -0.1375
6 1 4.1568 1.8040 0.6735
7 6 4.1273 0.9877 -1.2986
8 7 5.4073 0.6858 -1.3140
9 14 3.1041 0.7978 -2.8498
10 1 3.9636 0.2945 -3.9512
11 1 2.0024 -0.1664 -2.6011
12 1 2.5330 2.1145 -3.2304
13 7 1.6639 2.0934 1.2574
14 6 0.4477 2.6599 1.3854
15 8 -0.3374 2.6304 0.4575
16 7 0.1018 3.2592 2.5420
17 6 -1.1566 3.8449 2.6747
18 6 -2.1300 3.8855 1.7247
19 6 -3.2283 4.5620 2.2642
20 7 -2.9364 4.9171 3.4891
21 7 -1.6392 4.4760 3.7806
22 6 -0.9607 4.6539 4.9893
23 6 -1.3025 5.7135 5.8210
24 6 -0.6265 5.8752 7.0178
25 6 0.3796 4.9737 7.3369
26 6 0.6701 3.9469 6.4600
27 7 0.0044 3.8149 5.3289
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8934 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8900
33 1 5.9550 0.8548 -0.5315
34 1 2.2902 2.1166 1.9978
35 1 0.7281 3.2824 3.2824
36 1 -2.0654 3.4695 0.7301
37 1 -4.1606 4.7583 1.7555
38 1 -2.0877 6.3993 5.5390
39 1 -0.8734 6.6866 7.6864
40 1 0.9296 5.0742 8.2608
41 1 1.4522 3.2431 6.7036
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000514996950.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:27
Heat of formation + Delta-G solvation = 83.386085 kcal
Electronic energy + Delta-G solvation = -25971.174385 eV
Core-core repulsion = 22273.934443 eV
Total energy + Delta-G solvation = -3697.239942 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.89867 -41.27307 -40.76770 -37.50519 -35.92281 -34.57813 -34.51157 -33.56152
-33.09272 -30.61118 -30.08036 -28.88224 -25.14573 -24.89275 -24.39723 -23.48237
-22.32365 -21.62974 -21.42564 -20.09271 -19.88665 -18.59166 -17.81229 -17.42167
-17.06976 -16.82809 -16.60619 -16.10511 -15.84686 -15.53928 -15.15752 -14.85643
-14.72211 -14.53955 -14.45209 -14.21794 -14.17200 -14.01883 -13.68392 -13.01610
-12.69322 -12.50525 -12.31889 -12.12849 -12.01148 -11.76525 -11.41349 -11.35972
-11.18274 -11.03895 -11.01137 -10.74037 -10.47682 -9.99240 -9.47693 -9.16756
-8.79919 -6.44716 -0.35892 0.13419 0.70350 0.88109 1.48409 1.53610
1.66874 1.70387 1.74874 2.20723 2.43268 2.65940 3.01936 3.15521
3.22337 3.55877 3.96651 3.97520 4.05503 4.21066 4.24126 4.33972
4.41815 4.51612 4.55886 4.68339 4.82196 4.86751 4.97678 5.09574
5.13603 5.14312 5.20207 5.29784 5.48363 5.52448 5.55592 5.62489
5.70942 5.89303 6.00066 6.04864 6.36381 6.51945 6.79567 6.98238
7.28445 7.45149 8.60180
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.018095 B = 0.003585 C = 0.003160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.984622 B = 7807.952725 C = 8858.742105
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.137 4.137
3 C 0.271 3.729
4 H 0.029 0.971
5 C -0.614 4.614
6 H 0.040 0.960
7 C -0.003 4.003
8 N -0.927 5.927
9 Si 1.070 2.930
10 H -0.284 1.284
11 H -0.240 1.240
12 H -0.273 1.273
13 N -0.707 5.707
14 C 0.703 3.297
15 O -0.585 6.585
16 N -0.650 5.650
17 C 0.336 3.664
18 C -0.300 4.300
19 C 0.092 3.908
20 N -0.303 5.303
21 N -0.350 5.350
22 C 0.332 3.668
23 C -0.169 4.169
24 C -0.045 4.045
25 C -0.169 4.169
26 C 0.120 3.880
27 N -0.546 5.546
28 H 0.042 0.958
29 H 0.045 0.955
30 H 0.054 0.946
31 H 0.063 0.937
32 H 0.053 0.947
33 H 0.258 0.742
34 H 0.400 0.600
35 H 0.420 0.580
36 H 0.169 0.831
37 H 0.234 0.766
38 H 0.146 0.854
39 H 0.181 0.819
40 H 0.182 0.818
41 H 0.192 0.808
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.670 9.388 18.166 24.597
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.176 4.176
3 C 0.167 3.833
4 H 0.047 0.953
5 C -0.652 4.652
6 H 0.058 0.942
7 C -0.204 4.204
8 N -0.562 5.562
9 Si 0.892 3.108
10 H -0.210 1.210
11 H -0.165 1.165
12 H -0.198 1.198
13 N -0.359 5.359
14 C 0.403 3.597
15 O -0.463 6.463
16 N -0.301 5.301
17 C 0.117 3.883
18 C -0.332 4.332
19 C -0.095 4.095
20 N -0.123 5.123
21 N -0.134 5.134
22 C 0.106 3.894
23 C -0.191 4.191
24 C -0.071 4.071
25 C -0.189 4.189
26 C -0.037 4.037
27 N -0.261 5.261
28 H 0.061 0.939
29 H 0.064 0.936
30 H 0.073 0.927
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.067 0.933
34 H 0.234 0.766
35 H 0.259 0.741
36 H 0.186 0.814
37 H 0.250 0.750
38 H 0.164 0.836
39 H 0.198 0.802
40 H 0.199 0.801
41 H 0.209 0.791
Dipole moment (debyes) X Y Z Total
from point charges -14.350 8.676 16.255 23.354
hybrid contribution 1.256 0.691 2.038 2.492
sum -13.094 9.367 18.293 24.368
Atomic orbital electron populations
1.21742 0.95492 1.00261 1.01416 1.22282 0.95389 0.98237 1.01669
1.18737 0.93425 0.89442 0.81725 0.95319 1.22258 0.91286 1.48321
1.03312 0.94221 1.26818 0.97682 0.91976 1.03913 1.70983 1.08037
1.43204 1.33994 0.83747 0.75247 0.78819 0.72988 1.20957 1.16482
1.19845 1.45243 1.13469 1.58703 1.18462 1.15803 0.83298 0.78663
0.81944 1.90802 1.51246 1.64694 1.39568 1.42078 1.14086 1.57176
1.16739 1.18179 0.86891 0.94313 0.88869 1.21814 0.93768 1.14654
1.02928 1.24558 1.00252 0.93781 0.90893 1.77473 0.90933 1.25427
1.18422 1.45939 1.12671 1.46661 1.08105 1.18151 0.92624 0.93160
0.85416 1.21823 1.03507 0.97572 0.96233 1.22022 0.92255 0.98736
0.94040 1.22619 0.98799 0.95117 1.02384 1.23183 0.96312 0.97424
0.86769 1.66736 1.09411 1.27614 1.22290 0.93892 0.93551 0.92677
0.91831 0.92841 0.93287 0.76587 0.74060 0.81423 0.74958 0.83583
0.80170 0.80067 0.79145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.13 8.53 71.98 0.61 -4.52 16
2 C -0.14 -5.91 5.27 30.59 0.16 -5.75 16
3 C 0.27 12.70 1.82 44.24 0.08 12.78 16
4 H 0.03 1.46 6.25 -2.39 -0.01 1.44 16
5 C -0.61 -33.03 9.01 25.60 0.23 -32.80 16
6 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16
7 C 0.00 -0.17 5.32 84.66 0.45 0.28 16
8 N -0.93 -55.55 13.70 21.45 0.29 -55.25 16
9 Si 1.07 49.49 26.27 68.60 1.80 51.29 16
10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
11 H -0.24 -10.03 5.67 99.48 0.56 -9.46 16
12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
13 N -0.71 -28.64 5.03 -461.42 -2.32 -30.96 16
14 C 0.70 27.81 7.12 179.05 1.28 29.09 16
15 O -0.59 -25.47 10.61 -3.99 -0.04 -25.51 16
16 N -0.65 -22.28 5.35 -321.71 -1.72 -24.00 16
17 C 0.34 11.49 7.57 131.04 0.99 12.48 16
18 C -0.30 -9.82 9.65 22.15 0.21 -9.60 16
19 C 0.09 2.37 12.00 85.22 1.02 3.40 16
20 N -0.30 -8.61 12.09 -57.06 -0.69 -9.30 16
21 N -0.35 -10.75 3.78 -189.54 -0.72 -11.47 16
22 C 0.33 8.72 7.40 132.79 0.98 9.71 16
23 C -0.17 -3.28 9.74 22.48 0.22 -3.06 16
24 C -0.04 -0.51 10.17 22.45 0.23 -0.28 16
25 C -0.17 -1.68 10.11 22.38 0.23 -1.45 16
26 C 0.12 1.86 11.18 84.65 0.95 2.80 16
27 N -0.55 -13.25 8.16 -192.83 -1.57 -14.83 16
28 H 0.04 1.71 5.63 -2.39 -0.01 1.70 16
29 H 0.05 1.86 7.88 -2.39 -0.02 1.84 16
30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16
31 H 0.06 2.82 4.74 -2.38 -0.01 2.81 16
32 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16
33 H 0.26 15.48 8.73 -92.71 -0.81 14.67 16
34 H 0.40 14.66 8.54 -92.71 -0.79 13.87 16
35 H 0.42 12.97 6.81 -92.71 -0.63 12.34 16
36 H 0.17 6.05 5.83 -2.91 -0.02 6.03 16
37 H 0.23 3.64 8.06 -2.91 -0.02 3.62 16
38 H 0.15 2.73 7.91 -2.91 -0.02 2.71 16
39 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16
40 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16
41 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16
Total: -1.00 -72.41 338.54 2.16 -70.24
By element:
Atomic # 1 Polarization: 37.23 SS G_CDS: -0.51 Total: 36.72 kcal
Atomic # 6 Polarization: 5.43 SS G_CDS: 7.64 Total: 13.07 kcal
Atomic # 7 Polarization: -139.08 SS G_CDS: -6.73 Total: -145.81 kcal
Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal
Atomic # 14 Polarization: 49.49 SS G_CDS: 1.80 Total: 51.29 kcal
Total: -72.41 2.16 -70.24 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000514996950.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.629 kcal
(2) G-P(sol) polarization free energy of solvation -72.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds