Wall clock time and date at job start Tue Mar 31 2020 11:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21592 * 119.99877 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00198 * 179.97438 * 14 13 3 17 17 C 1.39430 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.36081 * 126.28400 * 0.03024 * 17 16 14 19 19 C 1.39820 * 107.87993 * 179.97438 * 18 17 16 20 20 N 1.30836 * 108.49450 * 0.02562 * 19 18 17 21 21 N 1.36173 * 126.28088 * 179.71893 * 17 16 14 22 22 C 1.39753 * 126.12083 * 359.97438 * 21 17 16 23 23 C 1.38964 * 119.69330 * 154.72957 * 22 21 17 24 24 C 1.38403 * 119.10657 * 179.73292 * 23 22 21 25 25 C 1.38807 * 118.48477 * 0.53713 * 24 23 22 26 26 C 1.38115 * 119.29734 * 359.72125 * 25 24 23 27 27 N 1.31901 * 120.84391 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 35 35 H 0.97002 * 119.99301 * 0.02562 * 16 14 13 36 36 H 1.07996 * 126.06082 * 359.94307 * 18 17 16 37 37 H 1.07994 * 125.75066 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.44232 * 0.02562 * 23 22 21 39 39 H 1.07994 * 120.75958 * 180.28264 * 24 23 22 40 40 H 1.07997 * 120.35384 * 179.70745 * 25 24 23 41 41 H 1.07998 * 119.57609 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 7 0.0787 3.2675 -2.5183 17 6 -1.1809 3.8535 -2.6375 18 6 -2.1453 3.8919 -1.6782 19 6 -3.2482 4.5708 -2.2052 20 7 -2.9675 4.9294 -3.4318 21 7 -1.6695 4.4976 -3.7333 22 6 -0.9972 4.6912 -4.9431 23 6 -1.7243 4.8703 -6.1137 24 6 -1.0462 5.0665 -7.3042 25 6 0.3417 5.0654 -7.2834 26 6 0.9995 4.8758 -6.0838 27 7 0.3258 4.6963 -4.9641 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8293 -0.0605 2.9501 34 1 2.2718 2.1232 -1.9978 35 1 0.6982 3.2931 -3.2643 36 1 -2.0720 3.4720 -0.6860 37 1 -4.1757 4.7655 -1.6874 38 1 -2.8041 4.8613 -6.0940 39 1 -1.5845 5.2130 -8.2288 40 1 0.9013 5.2110 -8.1955 41 1 2.0793 4.8736 -6.0625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514996952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:31 Heat of formation + Delta-G solvation = 104.101775 kcal Electronic energy + Delta-G solvation = -25882.685288 eV Core-core repulsion = 22186.343646 eV Total energy + Delta-G solvation = -3696.341642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.71682 -40.15378 -39.34380 -35.57731 -34.39421 -33.54013 -32.77711 -32.43071 -30.92605 -29.63247 -28.69385 -26.83137 -24.19192 -24.07643 -23.19014 -21.85303 -21.19963 -20.09729 -19.54237 -18.71037 -17.83616 -17.00920 -16.35245 -15.95698 -15.82998 -15.55383 -15.13030 -14.79362 -14.71950 -14.23269 -13.83119 -13.65468 -13.53668 -13.31032 -12.88604 -12.67757 -12.36439 -12.33216 -11.61841 -11.28100 -11.00230 -10.90441 -10.74744 -10.65826 -10.50536 -10.32355 -10.20843 -10.19223 -9.98455 -9.61833 -9.34042 -9.05485 -8.53475 -8.52083 -8.09148 -7.68407 -6.14673 -4.23835 0.51277 0.84068 1.86274 2.03364 2.96772 3.09244 3.22749 3.31117 3.33742 3.44815 3.88150 4.07475 4.30459 4.38165 4.57876 4.68004 4.80070 4.86507 5.01410 5.17355 5.35339 5.41171 5.65897 5.71826 5.79831 6.04312 6.27503 6.39284 6.40893 6.47304 6.65176 6.83538 6.96990 7.08957 7.18880 7.29797 7.34177 7.36097 7.43563 7.62574 7.75086 7.86759 7.98643 8.16113 8.68262 8.79284 9.16627 9.43759 10.90767 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.003494 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993467 B = 8012.705282 C = 9268.828886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.699 3.301 15 O -0.563 6.563 16 N -0.661 5.661 17 C 0.364 3.636 18 C -0.286 4.286 19 C 0.085 3.915 20 N -0.300 5.300 21 N -0.351 5.351 22 C 0.379 3.621 23 C -0.164 4.164 24 C -0.052 4.052 25 C -0.191 4.191 26 C 0.135 3.865 27 N -0.517 5.517 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.387 0.613 35 H 0.412 0.588 36 H 0.185 0.815 37 H 0.193 0.807 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 7.599 -17.859 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.363 5.363 14 C 0.399 3.601 15 O -0.439 6.439 16 N -0.312 5.312 17 C 0.145 3.855 18 C -0.317 4.317 19 C -0.102 4.102 20 N -0.120 5.120 21 N -0.134 5.134 22 C 0.151 3.849 23 C -0.186 4.186 24 C -0.078 4.078 25 C -0.212 4.212 26 C -0.022 4.022 27 N -0.232 5.232 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.250 0.750 36 H 0.202 0.798 37 H 0.210 0.790 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.309 7.839 -17.013 20.493 hybrid contribution 1.521 -0.234 -0.745 1.710 sum -6.788 7.605 -17.758 20.476 Atomic orbital electron populations 1.21826 0.98204 0.98036 1.01311 1.21968 0.92767 0.99753 1.02316 1.18793 0.94155 0.88913 0.79639 0.92958 1.21246 0.90549 1.39096 1.06395 0.91990 1.24869 0.98650 0.94768 0.95338 1.69902 1.35052 1.37542 1.09297 0.86385 0.84765 0.77758 0.78131 1.19772 1.20857 1.20877 1.45816 1.12739 1.58265 1.19512 1.15880 0.83970 0.78833 0.81467 1.90820 1.51347 1.63842 1.37845 1.42482 1.13642 1.57399 1.17649 1.18022 0.86942 0.92861 0.87630 1.21823 0.92959 1.13898 1.03053 1.24002 0.99626 0.95058 0.91542 1.77524 0.91389 1.25328 1.17808 1.45783 1.12626 1.46294 1.08727 1.17801 0.87885 0.95449 0.83718 1.21655 1.02199 1.03784 0.90988 1.21537 0.94331 0.94041 0.97867 1.22139 0.95222 1.03810 1.00002 1.22584 1.00235 0.93046 0.86342 1.66834 1.06877 1.17448 1.31996 0.92957 0.95904 0.94370 0.88127 0.95068 0.92558 0.78091 0.75002 0.79789 0.79010 0.83558 0.83940 0.84056 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 7.06 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.21 11.29 55.43 0.63 -23.58 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.28 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.71 -14.69 5.03 -59.81 -0.30 -14.99 16 14 C 0.70 14.25 7.10 -86.91 -0.62 13.63 16 15 O -0.56 -12.83 10.60 5.28 0.06 -12.77 16 16 N -0.66 -11.52 5.35 -15.65 -0.08 -11.61 16 17 C 0.36 6.35 7.57 -152.39 -1.15 5.20 16 18 C -0.29 -4.85 9.65 -39.76 -0.38 -5.24 16 19 C 0.09 1.18 12.00 -17.38 -0.21 0.97 16 20 N -0.30 -4.51 12.09 30.61 0.37 -4.14 16 21 N -0.35 -5.53 3.78 -11.26 -0.04 -5.57 16 22 C 0.38 5.18 7.40 -154.41 -1.14 4.04 16 23 C -0.16 -1.74 9.74 -39.25 -0.38 -2.13 16 24 C -0.05 -0.39 10.17 -39.31 -0.40 -0.79 16 25 C -0.19 -1.33 10.11 -39.42 -0.40 -1.73 16 26 C 0.14 1.21 11.18 -17.57 -0.20 1.02 16 27 N -0.52 -6.59 8.16 -12.30 -0.10 -6.69 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.39 6.99 8.55 -40.82 -0.35 6.64 16 35 H 0.41 6.40 6.82 -40.82 -0.28 6.13 16 36 H 0.19 3.43 5.83 -52.49 -0.31 3.13 16 37 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.15 1.48 7.91 -52.48 -0.42 1.07 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -31.45 342.98 -9.42 -40.86 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -4.83 Total: 14.55 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -5.26 Total: 3.49 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 0.47 Total: -66.59 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.06 Total: -12.77 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.45 -9.42 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514996952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.966 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds