Wall clock time and date at job start Tue Mar 31 2020 11:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21592 * 119.99877 * 359.97438 * 14 13 3 16 16 N 1.34781 * 120.00198 * 179.97438 * 14 13 3 17 17 C 1.39430 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.36081 * 126.28400 * 0.03024 * 17 16 14 19 19 C 1.39820 * 107.87993 * 179.97438 * 18 17 16 20 20 N 1.30836 * 108.49450 * 0.02562 * 19 18 17 21 21 N 1.36173 * 126.28088 * 179.71893 * 17 16 14 22 22 C 1.39753 * 126.12083 * 359.97438 * 21 17 16 23 23 C 1.38964 * 119.69330 * 154.72957 * 22 21 17 24 24 C 1.38403 * 119.10657 * 179.73292 * 23 22 21 25 25 C 1.38807 * 118.48477 * 0.53713 * 24 23 22 26 26 C 1.38115 * 119.29734 * 359.72125 * 25 24 23 27 27 N 1.31901 * 120.84391 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 35 35 H 0.97002 * 119.99301 * 0.02562 * 16 14 13 36 36 H 1.07996 * 126.06082 * 359.94307 * 18 17 16 37 37 H 1.07994 * 125.75066 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.44232 * 0.02562 * 23 22 21 39 39 H 1.07994 * 120.75958 * 180.28264 * 24 23 22 40 40 H 1.07997 * 120.35384 * 179.70745 * 25 24 23 41 41 H 1.07998 * 119.57609 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4319 16 7 0.0787 3.2675 -2.5183 17 6 -1.1809 3.8535 -2.6375 18 6 -2.1453 3.8919 -1.6782 19 6 -3.2482 4.5708 -2.2052 20 7 -2.9675 4.9294 -3.4318 21 7 -1.6695 4.4976 -3.7333 22 6 -0.9972 4.6912 -4.9431 23 6 -1.7243 4.8703 -6.1137 24 6 -1.0462 5.0665 -7.3042 25 6 0.3417 5.0654 -7.2834 26 6 0.9995 4.8758 -6.0838 27 7 0.3258 4.6963 -4.9641 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8293 -0.0605 2.9501 34 1 2.2718 2.1232 -1.9978 35 1 0.6982 3.2931 -3.2643 36 1 -2.0720 3.4720 -0.6860 37 1 -4.1757 4.7655 -1.6874 38 1 -2.8041 4.8613 -6.0940 39 1 -1.5845 5.2130 -8.2288 40 1 0.9013 5.2110 -8.1955 41 1 2.0793 4.8736 -6.0625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514996952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:30 Heat of formation + Delta-G solvation = 84.771670 kcal Electronic energy + Delta-G solvation = -25883.523504 eV Core-core repulsion = 22186.343646 eV Total energy + Delta-G solvation = -3697.179858 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86447 -41.19428 -40.71571 -37.34716 -35.86751 -34.54560 -34.34460 -33.52213 -32.74113 -30.57769 -30.03302 -28.70925 -25.28110 -24.91988 -24.83425 -23.34703 -22.27274 -21.55989 -21.32164 -19.93614 -19.43675 -17.91871 -17.72953 -17.22428 -17.18004 -16.83361 -16.51007 -16.14859 -16.04606 -15.57228 -15.17805 -14.79463 -14.72314 -14.54113 -14.17860 -14.08465 -14.00959 -13.54984 -13.17789 -12.98525 -12.86871 -12.70399 -12.19414 -12.13781 -12.03520 -11.94798 -11.54709 -11.37811 -11.10695 -11.00904 -10.98083 -10.70388 -10.53499 -9.82709 -9.43952 -9.11272 -8.15287 -6.32020 -0.33127 0.16819 0.73806 0.91448 1.45766 1.47127 1.58383 1.72499 1.76644 2.28402 2.43010 2.69344 3.14468 3.23128 3.31438 3.58245 3.99027 4.00774 4.08672 4.24781 4.27404 4.51815 4.56397 4.59016 4.71183 4.76279 4.89076 5.01595 5.06444 5.13506 5.16915 5.26761 5.45023 5.48104 5.54200 5.60207 5.63153 5.77364 5.85502 5.97864 6.14110 6.18108 6.39948 6.74457 6.84526 7.11253 7.34768 7.58103 8.90424 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.003494 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.993467 B = 8012.705282 C = 9268.828886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.708 5.708 14 C 0.700 3.300 15 O -0.591 6.591 16 N -0.648 5.648 17 C 0.339 3.661 18 C -0.304 4.304 19 C 0.092 3.908 20 N -0.302 5.302 21 N -0.350 5.350 22 C 0.331 3.669 23 C -0.169 4.169 24 C -0.045 4.045 25 C -0.169 4.169 26 C 0.121 3.879 27 N -0.546 5.546 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.420 0.580 36 H 0.163 0.837 37 H 0.233 0.767 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.183 0.817 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 8.326 -21.169 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.360 5.360 14 C 0.400 3.600 15 O -0.468 6.468 16 N -0.300 5.300 17 C 0.120 3.880 18 C -0.336 4.336 19 C -0.095 4.095 20 N -0.122 5.122 21 N -0.133 5.133 22 C 0.106 3.894 23 C -0.191 4.191 24 C -0.071 4.071 25 C -0.189 4.189 26 C -0.036 4.036 27 N -0.260 5.260 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.260 0.740 36 H 0.181 0.819 37 H 0.249 0.751 38 H 0.163 0.837 39 H 0.198 0.802 40 H 0.200 0.800 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.545 8.597 -20.409 23.396 hybrid contribution 1.267 -0.374 0.124 1.327 sum -6.278 8.223 -20.285 22.771 Atomic orbital electron populations 1.21653 0.96953 0.99040 1.00257 1.21815 0.93763 0.99063 1.01415 1.18377 0.93649 0.88884 0.79705 0.97670 1.21564 0.91169 1.39072 1.06818 0.91055 1.25724 1.03222 0.94342 0.94968 1.70045 1.36948 1.38224 1.09809 0.85319 0.79170 0.77806 0.78153 1.18554 1.21080 1.20419 1.45446 1.13329 1.58411 1.18849 1.15886 0.83504 0.78740 0.81902 1.90817 1.52086 1.64787 1.39158 1.42098 1.14128 1.56926 1.16822 1.18168 0.86884 0.94018 0.88952 1.21784 0.94457 1.14893 1.02469 1.24524 1.00127 0.93813 0.91013 1.77452 0.91503 1.25121 1.18156 1.45935 1.12604 1.45734 1.09060 1.18156 0.88728 0.98848 0.83632 1.21815 1.02313 1.03793 0.91216 1.22017 0.94846 0.92258 0.97937 1.22622 0.95205 1.00435 1.00610 1.23203 1.01500 0.92636 0.86251 1.66746 1.06846 1.18344 1.34112 0.95029 0.93726 0.94351 0.90589 0.94149 0.92527 0.76470 0.73972 0.81927 0.75071 0.83660 0.80184 0.80002 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.30 15.11 2.24 44.24 0.10 15.21 16 4 H 0.01 0.32 7.58 -2.38 -0.02 0.31 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.35 11.29 21.45 0.24 -51.11 16 9 Si 0.97 41.57 29.54 68.60 2.03 43.60 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.71 -29.88 5.03 -461.39 -2.32 -32.20 16 14 C 0.70 29.57 7.10 179.05 1.27 30.84 16 15 O -0.59 -28.37 10.60 -4.01 -0.04 -28.41 16 16 N -0.65 -23.24 5.35 -321.69 -1.72 -24.97 16 17 C 0.34 12.18 7.57 131.04 0.99 13.18 16 18 C -0.30 -10.74 9.65 22.15 0.21 -10.53 16 19 C 0.09 2.56 12.00 85.22 1.02 3.58 16 20 N -0.30 -9.01 12.09 -57.06 -0.69 -9.70 16 21 N -0.35 -11.15 3.78 -189.53 -0.72 -11.86 16 22 C 0.33 8.91 7.40 132.79 0.98 9.89 16 23 C -0.17 -3.33 9.74 22.48 0.22 -3.11 16 24 C -0.04 -0.51 10.17 22.45 0.23 -0.28 16 25 C -0.17 -1.65 10.11 22.38 0.23 -1.42 16 26 C 0.12 1.86 11.18 84.65 0.95 2.81 16 27 N -0.55 -13.46 8.16 -192.83 -1.57 -15.03 16 28 H 0.03 1.52 7.84 -2.39 -0.02 1.51 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.71 5.64 -2.38 -0.01 1.70 16 31 H 0.08 4.14 5.95 -2.39 -0.01 4.12 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 34 H 0.40 14.50 8.55 -92.71 -0.79 13.71 16 35 H 0.42 13.27 6.82 -92.71 -0.63 12.64 16 36 H 0.16 6.47 5.83 -2.91 -0.02 6.46 16 37 H 0.23 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.15 2.78 7.91 -2.91 -0.02 2.76 16 39 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -71.72 342.98 2.52 -69.19 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -0.33 Total: 38.00 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 7.65 Total: 22.48 kcal Atomic # 7 Polarization: -138.09 SS G_CDS: -6.78 Total: -144.86 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.04 Total: -28.41 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -71.72 2.52 -69.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514996952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.966 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds