Wall clock time and date at job start Tue Mar 31 2020 10:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39733 * 125.78217 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39389 * 126.26303 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99736 * 0.02562 * 5 4 3 7 7 O 1.21586 * 120.00261 * 359.97438 * 6 5 4 8 8 C 1.47669 * 119.99467 * 179.97438 * 6 5 4 9 9 N 1.31862 * 126.57952 * 359.68898 * 8 6 5 10 10 N 1.28454 * 110.05905 * 179.88255 * 9 8 6 11 11 H 0.97000 * 124.88612 * 180.19865 * 10 9 8 12 12 C 1.35260 * 110.23621 * 0.40373 * 10 9 8 13 13 C 1.35042 * 107.07803 * 359.74609 * 12 10 9 14 14 C 1.50947 * 110.53026 * 180.02562 * 13 12 10 15 15 C 1.54520 * 104.96548 * 16.76809 * 14 13 12 16 16 C 1.51236 * 142.76872 * 179.72350 * 12 10 9 17 17 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 18 18 C 1.46501 * 126.09680 * 179.97438 * 17 4 3 19 19 C 1.50698 * 109.46943 * 270.02493 * 18 17 4 20 20 H 1.08003 * 120.00367 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00202 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00248 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99802 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47223 * 89.99713 * 23 21 19 25 25 H 1.48505 * 109.47490 * 210.00114 * 23 21 19 26 26 H 1.48504 * 109.47342 * 329.99935 * 23 21 19 27 27 N 1.30835 * 125.77803 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47524 * 270.00160 * 1 2 3 29 29 H 1.09001 * 109.47066 * 29.99718 * 1 2 3 30 30 H 1.09003 * 109.47671 * 150.00089 * 1 2 3 31 31 H 1.07995 * 126.06663 * 0.04459 * 3 2 1 32 32 H 0.96997 * 120.00184 * 180.02562 * 5 4 3 33 33 H 1.08998 * 110.34155 * 135.63850 * 14 13 12 34 34 H 1.08996 * 110.33956 * 257.79382 * 14 13 12 35 35 H 1.09002 * 110.93055 * 92.68967 * 15 14 13 36 36 H 1.08999 * 110.92845 * 216.31540 * 15 14 13 37 37 H 1.09005 * 110.32722 * 44.29682 * 16 12 10 38 38 H 1.08998 * 110.41326 * 282.12525 * 16 12 10 39 39 H 1.09007 * 109.46955 * 30.02131 * 18 17 4 40 40 H 1.08992 * 109.47542 * 150.02203 * 18 17 4 41 41 H 0.97007 * 119.99748 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7146 -0.0006 5 7 4.7497 1.5303 -0.0013 6 6 4.6130 2.8712 -0.0009 7 8 3.5039 3.3693 -0.0004 8 6 5.8105 3.7353 -0.0011 9 7 7.0674 3.3364 0.0042 10 7 7.8523 4.3532 -0.0003 11 1 8.8212 4.3061 -0.0006 12 6 7.1336 5.4991 0.0000 13 6 5.8293 5.1491 -0.0007 14 6 4.9517 6.3773 -0.0010 15 6 5.8829 7.5330 -0.4310 16 6 7.2690 7.0053 0.0013 17 7 3.6087 -0.6434 -0.0015 18 6 4.7857 -1.5157 -0.0029 19 6 5.1887 -1.8133 -1.4242 20 1 4.6243 -1.3949 -2.2445 21 6 6.2779 -2.6197 -1.6775 22 7 6.6293 -2.8799 -2.9178 23 14 7.2546 -3.3429 -0.2589 24 1 6.6803 -4.6597 0.1171 25 1 8.6701 -3.5198 -0.6717 26 1 7.1900 -2.4240 0.9059 27 7 2.2718 -1.0614 -0.0005 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9875 2.1598 0.0007 32 1 5.6345 1.1330 -0.0020 33 1 4.1373 6.2608 -0.7160 34 1 4.5551 6.5598 0.9977 35 1 5.8429 7.6844 -1.5098 36 1 5.6329 8.4521 0.0988 37 1 8.0321 7.3175 -0.7118 38 1 7.5160 7.3640 1.0005 39 1 5.6078 -1.0175 0.5111 40 1 4.5480 -2.4475 0.5100 41 1 7.3959 -3.4470 -3.0960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519444838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:44 Heat of formation + Delta-G solvation = 128.648506 kcal Electronic energy + Delta-G solvation = -25653.256567 eV Core-core repulsion = 21957.979351 eV Total energy + Delta-G solvation = -3695.277216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.06197 -40.76373 -38.89223 -37.06335 -34.70225 -33.69384 -32.23684 -31.99530 -29.47691 -28.98819 -28.43134 -27.69859 -26.24825 -24.46793 -22.43765 -21.96238 -20.93056 -20.23714 -19.56849 -19.00863 -17.76886 -17.15150 -16.88602 -16.47683 -16.19850 -15.23893 -15.01894 -14.75291 -14.30134 -14.03407 -13.74630 -13.63870 -13.16876 -13.07218 -13.00164 -12.71079 -12.54096 -12.26583 -12.08892 -11.84231 -11.74935 -11.45729 -11.43567 -11.09652 -10.91341 -10.79406 -10.44545 -10.19353 -10.06218 -9.71111 -9.57975 -9.51138 -8.81339 -8.80580 -7.89074 -7.43679 -6.28177 -4.31934 1.39105 1.86770 2.42402 2.67279 2.83262 3.13742 3.19251 3.21777 3.37790 3.71514 3.72818 4.00728 4.19169 4.31721 4.40036 4.68996 4.84827 4.97663 4.98715 5.23755 5.34633 5.40009 5.45793 5.59868 5.65973 5.71682 5.91068 5.95114 6.04322 6.10430 6.19735 6.21021 6.28144 6.37927 6.41125 6.67030 6.79055 6.82861 7.25579 7.48247 7.55821 7.67814 7.85735 8.22739 8.35680 8.61742 8.78435 9.26776 10.84181 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011304 B = 0.004335 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.411179 B = 6457.848091 C = 8516.480050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 C -0.289 4.289 4 C 0.306 3.694 5 N -0.628 5.628 6 C 0.611 3.389 7 O -0.503 6.503 8 C 0.013 3.987 9 N -0.243 5.243 10 N -0.359 5.359 11 H 0.445 0.555 12 C -0.025 4.025 13 C -0.156 4.156 14 C -0.048 4.048 15 C -0.116 4.116 16 C -0.035 4.035 17 N -0.345 5.345 18 C 0.230 3.770 19 C -0.544 4.544 20 H 0.082 0.918 21 C 0.080 3.920 22 N -0.884 5.884 23 Si 0.873 3.127 24 H -0.270 1.270 25 H -0.280 1.280 26 H -0.265 1.265 27 N -0.281 5.281 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.164 0.836 32 H 0.421 0.579 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 20.862 7.825 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.321 4.321 4 C 0.084 3.916 5 N -0.275 5.275 6 C 0.395 3.605 7 O -0.374 6.374 8 C -0.147 4.147 9 N -0.079 5.079 10 N -0.072 5.072 11 H 0.290 0.710 12 C -0.151 4.151 13 C -0.166 4.166 14 C -0.086 4.086 15 C -0.154 4.154 16 C -0.074 4.074 17 N -0.131 5.131 18 C 0.111 3.889 19 C -0.582 4.582 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.521 5.521 23 Si 0.699 3.301 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.190 1.190 27 N -0.106 5.106 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.258 0.742 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.180 18.799 7.708 20.435 hybrid contribution 1.593 0.474 0.464 1.725 sum 3.773 19.274 8.172 21.272 Atomic orbital electron populations 1.20033 0.87408 1.02613 1.02065 1.22029 0.96575 0.90919 1.01564 1.21277 0.88902 1.00551 1.21380 1.17979 0.87947 0.83027 1.02652 1.42553 1.08606 1.05244 1.71063 1.16671 0.86972 0.80230 0.76589 1.90720 1.24542 1.73884 1.48274 1.21055 0.90640 0.92078 1.10943 1.73819 1.01008 1.13904 1.19139 1.42615 1.09673 1.01527 1.53424 0.71048 1.22196 0.92209 0.92575 1.08151 1.20818 0.95380 0.92649 1.07767 1.20423 0.96911 0.88541 1.02712 1.22446 0.92760 0.98105 1.02059 1.20629 0.99378 0.84720 1.02704 1.49036 1.06107 1.01883 1.56040 1.19947 0.79360 0.89942 0.99701 1.21200 1.14227 1.32409 0.90345 0.90026 1.24808 0.96560 0.95260 0.95773 1.69878 1.26913 1.36690 1.18597 0.86906 0.79981 0.80594 0.82628 1.19489 1.20533 1.18960 1.77333 0.85816 1.21806 1.25669 0.91329 0.90989 0.91413 0.81847 0.74206 0.89935 0.90054 0.90395 0.89734 0.90367 0.89541 0.94250 0.93143 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.11 7.20 -82.46 -0.59 0.52 16 3 C -0.29 -6.09 9.58 -39.78 -0.38 -6.48 16 4 C 0.31 6.78 7.68 -152.74 -1.17 5.60 16 5 N -0.63 -12.37 5.41 -12.25 -0.07 -12.44 16 6 C 0.61 11.20 7.79 -12.41 -0.10 11.10 16 7 O -0.50 -9.80 14.05 5.29 0.07 -9.72 16 8 C 0.01 0.21 7.13 -82.80 -0.59 -0.38 16 9 N -0.24 -3.50 11.93 33.40 0.40 -3.10 16 10 N -0.36 -3.74 6.84 33.61 0.23 -3.51 16 11 H 0.45 2.89 8.96 -190.45 -1.71 1.19 16 12 C -0.02 -0.25 8.12 -81.95 -0.67 -0.91 16 13 C -0.16 -2.00 6.82 -104.44 -0.71 -2.71 16 14 C -0.05 -0.47 6.78 -26.96 -0.18 -0.65 16 15 C -0.12 -0.72 7.13 -25.15 -0.18 -0.90 16 16 C -0.04 -0.21 6.78 -26.84 -0.18 -0.40 16 17 N -0.35 -8.31 3.62 -61.45 -0.22 -8.53 16 18 C 0.23 5.65 5.09 -5.19 -0.03 5.63 16 19 C -0.54 -15.44 9.94 -34.44 -0.34 -15.78 16 20 H 0.08 2.64 8.06 -52.48 -0.42 2.21 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -26.41 13.96 55.43 0.77 -25.63 16 23 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 27 N -0.28 -6.65 12.56 33.64 0.42 -6.23 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.16 3.30 5.83 -52.49 -0.31 3.00 16 32 H 0.42 8.02 7.72 -40.82 -0.32 7.71 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.90 6.58 -51.93 -0.34 0.56 16 40 H 0.05 1.23 7.57 -51.93 -0.39 0.84 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -35.38 348.86 -9.11 -44.48 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.46 Total: 7.56 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.85 Total: -3.75 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 1.54 Total: -59.44 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.38 -9.11 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519444838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.132 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds