Wall clock time and date at job start Tue Mar 31 2020 11:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 N 1.46500 * 109.46712 * 119.99764 * 2 1 3 5 5 C 1.46507 * 120.00125 * 122.04978 * 4 2 1 6 6 C 1.50702 * 109.46708 * 269.99813 * 5 4 2 7 7 H 1.07991 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99312 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00515 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99534 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47039 * 90.00242 * 10 8 6 12 12 H 1.48508 * 109.47310 * 209.99841 * 10 8 6 13 13 H 1.48497 * 109.47368 * 330.00355 * 10 8 6 14 14 C 1.34774 * 120.00270 * 302.04409 * 4 2 1 15 15 O 1.21575 * 120.00495 * 211.58060 * 14 4 2 16 16 C 1.47683 * 119.99587 * 31.58076 * 14 4 2 17 17 C 1.40219 * 120.49485 * 138.12547 * 16 14 4 18 18 C 1.38038 * 118.35413 * 180.26201 * 17 16 14 19 19 C 1.39147 * 119.25530 * 359.75179 * 18 17 16 20 20 N 1.39545 * 119.53050 * 179.97438 * 19 18 17 21 21 C 1.34875 * 126.85194 * 179.73076 * 20 19 18 22 22 N 1.30782 * 108.01089 * 179.89949 * 21 20 19 23 23 C 1.33324 * 109.85041 * 0.38199 * 22 21 20 24 24 N 1.30698 * 109.02411 * 359.76210 * 23 22 21 25 25 N 1.32432 * 120.93863 * 0.02700 * 19 18 17 26 26 C 1.31627 * 121.81123 * 359.96847 * 25 19 18 27 27 H 1.09001 * 109.46840 * 253.61220 * 1 2 3 28 28 H 1.08995 * 109.46813 * 13.61132 * 1 2 3 29 29 H 1.09000 * 109.46842 * 133.60915 * 1 2 3 30 30 H 1.09004 * 109.47128 * 239.99551 * 2 1 3 31 31 H 1.08999 * 109.46805 * 223.22612 * 3 2 1 32 32 H 1.09005 * 109.46904 * 343.22336 * 3 2 1 33 33 H 1.08995 * 109.47166 * 103.22543 * 3 2 1 34 34 H 1.09004 * 109.46915 * 29.99557 * 5 4 2 35 35 H 1.08996 * 109.46968 * 149.99292 * 5 4 2 36 36 H 0.97010 * 120.00589 * 179.97438 * 9 8 6 37 37 H 1.08005 * 120.82460 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.37575 * 179.73272 * 18 17 16 39 39 H 1.08005 * 125.99576 * 0.02614 * 21 20 19 40 40 H 1.07998 * 125.49014 * 179.79368 * 23 22 21 41 41 H 1.07990 * 119.68588 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8972 -1.8551 1.0624 6 6 2.0631 -3.1079 0.9872 7 1 0.9862 -3.0433 1.0348 8 6 2.6750 -4.3366 0.8577 9 7 3.9865 -4.4154 0.8002 10 14 1.6411 -5.8897 0.7652 11 1 1.3123 -6.1817 -0.6533 12 1 2.4034 -7.0269 1.3407 13 1 0.3859 -5.6953 1.5344 14 6 1.6591 -0.2546 2.4199 15 8 2.4208 -0.3825 3.3587 16 6 0.3399 0.3784 2.6202 17 6 -0.4302 0.0753 3.7521 18 6 -1.6590 0.6883 3.8923 19 6 -2.0876 1.5835 2.9170 20 7 -3.3291 2.2061 3.0528 21 6 -3.8847 3.0959 2.2051 22 7 -5.0510 3.4395 2.6869 23 6 -5.2715 2.8019 3.8368 24 7 -4.2465 2.0358 4.1025 25 7 -1.3346 1.8521 1.8613 26 6 -0.1568 1.2905 1.6881 27 1 -0.3633 -0.2899 0.9859 28 1 -0.3633 0.9988 -0.2418 29 1 -0.3633 -0.7088 -0.7441 30 1 1.8934 -0.5139 -0.8900 31 1 2.8672 1.5353 -0.7038 32 1 1.2335 2.1130 -0.2966 33 1 2.3829 1.7066 1.0004 34 1 3.4916 -1.7591 0.1537 35 1 3.5601 -1.9110 1.9258 36 1 4.4170 -5.2799 0.7095 37 1 -0.0726 -0.6235 4.4939 38 1 -2.2810 0.4754 4.7492 39 1 -3.4447 3.4594 1.2881 40 1 -6.1551 2.9018 4.4497 41 1 0.4286 1.5343 0.8140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:48 Heat of formation + Delta-G solvation = 189.264905 kcal Electronic energy + Delta-G solvation = -26311.849848 eV Core-core repulsion = 22619.201156 eV Total energy + Delta-G solvation = -3692.648692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62102 -41.51329 -38.88059 -36.74815 -34.57973 -33.32836 -32.80911 -31.72594 -31.35404 -30.19097 -27.44668 -27.08175 -25.21409 -24.30227 -23.09638 -22.27320 -21.93721 -21.57205 -18.96659 -18.86492 -17.16091 -16.63127 -16.43784 -16.24808 -15.87241 -15.45570 -15.20463 -14.96079 -14.56673 -14.41999 -14.23988 -13.67531 -13.64523 -13.28600 -12.83177 -12.52060 -12.39236 -12.32032 -12.20095 -11.90748 -11.39959 -11.30013 -11.05215 -10.98352 -10.65190 -10.48832 -10.39889 -10.24763 -10.19181 -10.03076 -9.90959 -9.77089 -9.28089 -8.56345 -8.39903 -7.77898 -6.16671 -4.23729 0.21225 1.07746 1.57801 1.69810 2.59871 2.97081 3.21461 3.29065 3.31755 3.52912 3.73516 3.90671 4.06100 4.21867 4.32510 4.57177 4.67654 4.79642 4.88239 4.94808 5.02309 5.09916 5.17577 5.28643 5.44604 5.52901 5.56616 5.67881 5.72077 5.83921 6.00082 6.04462 6.05931 6.14900 6.19945 6.32353 6.65069 6.93646 7.28138 7.33724 7.42185 7.76442 7.79831 8.08010 8.18811 8.59119 8.84148 9.42673 10.90591 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.003595 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.475448 B = 7786.775969 C = 8339.612205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.133 3.867 3 C -0.187 4.187 4 N -0.604 5.604 5 C 0.248 3.752 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.890 5.890 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.575 3.425 15 O -0.523 6.523 16 C -0.200 4.200 17 C -0.003 4.003 18 C -0.176 4.176 19 C 0.366 3.634 20 N -0.328 5.328 21 C 0.291 3.709 22 N -0.544 5.544 23 C 0.210 3.790 24 N -0.308 5.308 25 N -0.526 5.526 26 C 0.158 3.842 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.228 0.772 40 H 0.225 0.775 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 14.234 -0.205 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.028 3.972 3 C -0.245 4.245 4 N -0.337 5.337 5 C 0.130 3.870 6 C -0.576 4.576 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.528 5.528 10 Si 0.725 3.275 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.361 3.639 15 O -0.399 6.399 16 C -0.206 4.206 17 C -0.029 4.029 18 C -0.198 4.198 19 C 0.140 3.860 20 N -0.113 5.113 21 C -0.005 4.005 22 N -0.270 5.270 23 C -0.093 4.093 24 N -0.134 5.134 25 N -0.240 5.240 26 C 0.001 3.999 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.244 0.756 40 H 0.241 0.759 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.923 14.354 0.176 18.660 hybrid contribution -0.295 -1.687 0.294 1.738 sum -12.218 12.666 0.469 17.605 Atomic orbital electron populations 1.23768 0.96541 1.02343 1.03857 1.21085 0.93091 0.92540 0.90526 1.22776 1.02093 0.95961 1.03627 1.48068 1.50756 1.31838 1.02992 1.19395 0.88938 0.79934 0.98744 1.21489 0.93509 0.91107 1.51525 0.92329 1.24931 0.94979 0.99071 0.94897 1.69925 1.08156 1.25442 1.49325 0.86515 0.80220 0.82551 0.78262 1.20505 1.20981 1.19912 1.17653 0.84691 0.77794 0.83725 1.90744 1.51927 1.54891 1.42312 1.21480 0.99011 1.02477 0.97629 1.21566 0.91244 0.95158 0.94896 1.21457 0.98148 0.99172 1.01045 1.17816 0.83496 0.92179 0.92474 1.47446 1.13604 1.32610 1.17640 1.26435 0.89137 0.88159 0.96750 1.70717 1.15880 1.28574 1.11796 1.26265 0.97871 0.91635 0.93542 1.78178 1.01377 1.25348 1.08507 1.66946 1.07251 1.28489 1.21357 1.24788 0.90360 0.88145 0.96612 0.89637 0.90293 0.91365 0.87751 0.90676 0.90879 0.91494 0.94642 0.93513 0.92524 0.82966 0.83204 0.75569 0.75865 0.76714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.71 7.73 37.16 0.29 -2.42 16 2 C 0.13 1.93 3.27 -67.93 -0.22 1.71 16 3 C -0.19 -2.09 8.35 37.16 0.31 -1.78 16 4 N -0.60 -11.79 2.38 -168.62 -0.40 -12.19 16 5 C 0.25 6.05 5.32 -5.19 -0.03 6.03 16 6 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -25.27 13.28 55.43 0.74 -24.53 16 10 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.58 11.33 5.91 -12.40 -0.07 11.26 16 15 O -0.52 -12.18 16.78 5.30 0.09 -12.09 16 16 C -0.20 -3.17 4.25 -104.81 -0.45 -3.62 16 17 C 0.00 -0.04 9.81 -38.91 -0.38 -0.42 16 18 C -0.18 -2.34 9.70 -39.32 -0.38 -2.72 16 19 C 0.37 4.87 7.56 -154.46 -1.17 3.70 16 20 N -0.33 -4.11 3.80 -13.32 -0.05 -4.16 16 21 C 0.29 3.14 12.25 -90.29 -1.11 2.03 16 22 N -0.54 -6.11 11.19 -15.72 -0.18 -6.29 16 23 C 0.21 2.13 13.03 -91.75 -1.20 0.93 16 24 N -0.31 -3.80 11.99 29.30 0.35 -3.45 16 25 N -0.53 -6.67 9.83 -16.53 -0.16 -6.83 16 26 C 0.16 2.09 5.87 -17.15 -0.10 1.99 16 27 H 0.09 1.30 3.96 -62.02 -0.25 1.05 16 28 H 0.08 0.81 5.39 -51.93 -0.28 0.53 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.53 7.81 -51.93 -0.41 1.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.60 6.20 -51.93 -0.32 0.28 16 33 H 0.07 0.84 6.82 -51.93 -0.35 0.49 16 34 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 35 H 0.05 1.30 7.35 -51.93 -0.38 0.91 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 37 H 0.15 2.17 8.06 -52.48 -0.42 1.74 16 38 H 0.15 1.82 7.71 -52.49 -0.40 1.42 16 39 H 0.23 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.23 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.22 2.47 1.06 -53.81 -0.06 2.42 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -32.60 338.83 -8.97 -41.58 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.52 Total: 3.24 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -4.92 Total: 3.77 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.60 -8.97 -41.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.841 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds