Wall clock time and date at job start Tue Mar 31 2020 11:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 N 1.46500 * 109.46712 * 119.99764 * 2 1 3 5 5 C 1.46507 * 120.00125 * 122.04978 * 4 2 1 6 6 C 1.50702 * 109.46708 * 269.99813 * 5 4 2 7 7 H 1.07991 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99312 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00515 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99534 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47039 * 90.00242 * 10 8 6 12 12 H 1.48508 * 109.47310 * 209.99841 * 10 8 6 13 13 H 1.48497 * 109.47368 * 330.00355 * 10 8 6 14 14 C 1.34774 * 120.00270 * 302.04409 * 4 2 1 15 15 O 1.21575 * 120.00495 * 211.58060 * 14 4 2 16 16 C 1.47683 * 119.99587 * 31.58076 * 14 4 2 17 17 C 1.40219 * 120.49485 * 138.12547 * 16 14 4 18 18 C 1.38038 * 118.35413 * 180.26201 * 17 16 14 19 19 C 1.39147 * 119.25530 * 359.75179 * 18 17 16 20 20 N 1.39545 * 119.53050 * 179.97438 * 19 18 17 21 21 C 1.34875 * 126.85194 * 179.73076 * 20 19 18 22 22 N 1.30782 * 108.01089 * 179.89949 * 21 20 19 23 23 C 1.33324 * 109.85041 * 0.38199 * 22 21 20 24 24 N 1.30698 * 109.02411 * 359.76210 * 23 22 21 25 25 N 1.32432 * 120.93863 * 0.02700 * 19 18 17 26 26 C 1.31627 * 121.81123 * 359.96847 * 25 19 18 27 27 H 1.09001 * 109.46840 * 253.61220 * 1 2 3 28 28 H 1.08995 * 109.46813 * 13.61132 * 1 2 3 29 29 H 1.09000 * 109.46842 * 133.60915 * 1 2 3 30 30 H 1.09004 * 109.47128 * 239.99551 * 2 1 3 31 31 H 1.08999 * 109.46805 * 223.22612 * 3 2 1 32 32 H 1.09005 * 109.46904 * 343.22336 * 3 2 1 33 33 H 1.08995 * 109.47166 * 103.22543 * 3 2 1 34 34 H 1.09004 * 109.46915 * 29.99557 * 5 4 2 35 35 H 1.08996 * 109.46968 * 149.99292 * 5 4 2 36 36 H 0.97010 * 120.00589 * 179.97438 * 9 8 6 37 37 H 1.08005 * 120.82460 * 0.02562 * 17 16 14 38 38 H 1.07999 * 120.37575 * 179.73272 * 18 17 16 39 39 H 1.08005 * 125.99576 * 0.02614 * 21 20 19 40 40 H 1.07998 * 125.49014 * 179.79368 * 23 22 21 41 41 H 1.07990 * 119.68588 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8972 -1.8551 1.0624 6 6 2.0631 -3.1079 0.9872 7 1 0.9862 -3.0433 1.0348 8 6 2.6750 -4.3366 0.8577 9 7 3.9865 -4.4154 0.8002 10 14 1.6411 -5.8897 0.7652 11 1 1.3123 -6.1817 -0.6533 12 1 2.4034 -7.0269 1.3407 13 1 0.3859 -5.6953 1.5344 14 6 1.6591 -0.2546 2.4199 15 8 2.4208 -0.3825 3.3587 16 6 0.3399 0.3784 2.6202 17 6 -0.4302 0.0753 3.7521 18 6 -1.6590 0.6883 3.8923 19 6 -2.0876 1.5835 2.9170 20 7 -3.3291 2.2061 3.0528 21 6 -3.8847 3.0959 2.2051 22 7 -5.0510 3.4395 2.6869 23 6 -5.2715 2.8019 3.8368 24 7 -4.2465 2.0358 4.1025 25 7 -1.3346 1.8521 1.8613 26 6 -0.1568 1.2905 1.6881 27 1 -0.3633 -0.2899 0.9859 28 1 -0.3633 0.9988 -0.2418 29 1 -0.3633 -0.7088 -0.7441 30 1 1.8934 -0.5139 -0.8900 31 1 2.8672 1.5353 -0.7038 32 1 1.2335 2.1130 -0.2966 33 1 2.3829 1.7066 1.0004 34 1 3.4916 -1.7591 0.1537 35 1 3.5601 -1.9110 1.9258 36 1 4.4170 -5.2799 0.7095 37 1 -0.0726 -0.6235 4.4939 38 1 -2.2810 0.4754 4.7492 39 1 -3.4447 3.4594 1.2881 40 1 -6.1551 2.9018 4.4497 41 1 0.4286 1.5343 0.8140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:47 Heat of formation + Delta-G solvation = 170.905737 kcal Electronic energy + Delta-G solvation = -26312.645961 eV Core-core repulsion = 22619.201156 eV Total energy + Delta-G solvation = -3693.444805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.50442 -42.67552 -40.21518 -38.14070 -35.86109 -34.96500 -34.02027 -33.12294 -32.33173 -31.29408 -29.21958 -28.14421 -26.45223 -25.38476 -24.72190 -23.45364 -23.04374 -22.53855 -20.29572 -19.84182 -18.68717 -18.28096 -17.82038 -17.20284 -17.03080 -16.78283 -16.45509 -16.23169 -15.97945 -15.68428 -15.16039 -14.99081 -14.74716 -14.47747 -14.25853 -13.92037 -13.68137 -13.44152 -13.38848 -13.23410 -13.20055 -12.79811 -12.58128 -12.26175 -12.16500 -11.99340 -11.70842 -11.49039 -11.30407 -11.24738 -11.08379 -11.01840 -10.66421 -10.64139 -9.56197 -9.35693 -8.23898 -6.39915 -0.84253 0.00187 0.63033 0.78310 1.36586 1.38286 1.47164 1.54023 1.81883 2.14386 2.37830 2.53367 2.94822 3.05709 3.26721 3.37772 3.38076 3.56688 3.77009 3.82684 3.99931 4.04182 4.10316 4.21001 4.39749 4.50187 4.53920 4.71377 4.78186 4.84190 4.94707 4.99441 5.05884 5.10905 5.14097 5.20933 5.30875 5.34366 5.56260 5.73411 5.84750 6.03122 6.29981 6.62172 6.70464 6.90055 7.08161 7.32826 8.82375 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.003595 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.475448 B = 7786.775969 C = 8339.612205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.122 3.878 3 C -0.183 4.183 4 N -0.609 5.609 5 C 0.264 3.736 6 C -0.547 4.547 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.573 3.427 15 O -0.575 6.575 16 C -0.222 4.222 17 C -0.006 4.006 18 C -0.177 4.177 19 C 0.374 3.626 20 N -0.343 5.343 21 C 0.296 3.704 22 N -0.557 5.557 23 C 0.218 3.782 24 N -0.338 5.338 25 N -0.514 5.514 26 C 0.177 3.823 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.051 0.949 34 H 0.028 0.972 35 H 0.001 0.999 36 H 0.268 0.732 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.256 0.744 40 H 0.261 0.739 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 15.704 -1.556 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.019 3.981 3 C -0.240 4.240 4 N -0.340 5.340 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.076 0.924 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.197 1.197 14 C 0.362 3.638 15 O -0.455 6.455 16 C -0.228 4.228 17 C -0.032 4.032 18 C -0.200 4.200 19 C 0.148 3.852 20 N -0.128 5.128 21 C 0.001 3.999 22 N -0.283 5.283 23 C -0.084 4.084 24 N -0.163 5.163 25 N -0.228 5.228 26 C 0.020 3.980 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.164 0.836 38 H 0.177 0.823 39 H 0.271 0.729 40 H 0.277 0.723 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.859 15.861 -1.205 21.767 hybrid contribution 0.514 -2.048 0.722 2.231 sum -14.344 13.814 -0.483 19.920 Atomic orbital electron populations 1.23722 0.94927 1.04522 1.02836 1.21450 0.94458 0.94037 0.88156 1.22745 1.03984 0.93995 1.03265 1.48022 1.50243 1.30844 1.04923 1.18854 0.88959 0.81711 0.96162 1.21745 0.93550 0.92097 1.51132 0.92447 1.25797 0.96080 1.02359 0.94477 1.70044 1.09795 1.26322 1.50253 0.85475 0.78428 0.78432 0.78852 1.19001 1.20798 1.19692 1.18197 0.85630 0.77100 0.82898 1.90702 1.53663 1.57350 1.43750 1.21126 0.97458 1.04591 0.99618 1.21579 0.91821 0.95278 0.94514 1.21463 0.97551 0.99297 1.01674 1.17979 0.83749 0.91324 0.92125 1.47495 1.13466 1.33393 1.18421 1.27102 0.88833 0.86968 0.96987 1.70795 1.16171 1.28997 1.12349 1.27065 0.98149 0.89952 0.93199 1.78188 1.02138 1.26776 1.09199 1.67080 1.06722 1.28032 1.21003 1.24972 0.90373 0.86648 0.96003 0.91522 0.86655 0.91159 0.88147 0.89387 0.86778 0.93035 0.95431 0.98062 0.92333 0.83587 0.82277 0.72867 0.72311 0.74947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.83 7.73 71.98 0.56 -4.28 16 2 C 0.12 3.44 3.27 44.99 0.15 3.59 16 3 C -0.18 -3.67 8.35 71.98 0.60 -3.07 16 4 N -0.61 -24.53 2.38 -805.68 -1.92 -26.45 16 5 C 0.26 13.55 5.32 85.63 0.46 14.01 16 6 C -0.55 -29.79 9.39 25.60 0.24 -29.55 16 7 H 0.06 3.07 7.81 -2.92 -0.02 3.05 16 8 C 0.01 0.69 5.46 84.66 0.46 1.16 16 9 N -0.92 -53.98 13.28 21.45 0.28 -53.70 16 10 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 14 C 0.57 23.52 5.91 86.74 0.51 24.04 16 15 O -0.57 -28.62 16.78 -3.95 -0.07 -28.68 16 16 C -0.22 -7.05 4.25 -19.98 -0.09 -7.13 16 17 C -0.01 -0.17 9.81 22.70 0.22 0.05 16 18 C -0.18 -4.57 9.70 22.44 0.22 -4.35 16 19 C 0.37 9.16 7.56 132.87 1.00 10.17 16 20 N -0.34 -7.72 3.80 -196.07 -0.75 -8.47 16 21 C 0.30 5.44 12.25 180.23 2.21 7.64 16 22 N -0.56 -10.82 11.19 -203.65 -2.28 -13.10 16 23 C 0.22 3.80 13.03 180.74 2.35 6.15 16 24 N -0.34 -7.57 11.99 -61.21 -0.73 -8.30 16 25 N -0.51 -11.53 9.83 -206.22 -2.03 -13.56 16 26 C 0.18 4.30 5.87 85.04 0.50 4.80 16 27 H 0.07 1.93 3.96 -11.87 -0.05 1.88 16 28 H 0.12 1.88 5.39 -2.39 -0.01 1.87 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.10 2.89 7.81 -2.38 -0.02 2.87 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.36 6.20 -2.38 -0.01 1.35 16 33 H 0.05 1.24 6.82 -2.39 -0.02 1.22 16 34 H 0.03 1.43 7.94 -2.38 -0.02 1.41 16 35 H 0.00 0.07 7.35 -2.39 -0.02 0.06 16 36 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.16 3.74 7.71 -2.91 -0.02 3.72 16 39 H 0.26 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.26 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.24 4.65 1.06 -4.15 0.00 4.64 16 Total: -1.00 -73.94 338.83 4.98 -68.96 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 1.05 Total: 14.92 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 9.40 Total: 23.22 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -7.42 Total: -123.57 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.07 Total: -28.68 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.94 4.98 -68.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.865 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds