Wall clock time and date at job start Tue Mar 31 2020 11:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 N 1.46501 * 109.47598 * 120.00270 * 2 1 3 5 5 C 1.46490 * 120.00121 * 121.41205 * 4 2 1 6 6 C 1.50701 * 109.47608 * 270.00505 * 5 4 2 7 7 H 1.08001 * 119.99735 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00212 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99944 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99944 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47009 * 90.00425 * 10 8 6 12 12 H 1.48506 * 109.47267 * 209.99992 * 10 8 6 13 13 H 1.48503 * 109.47344 * 330.00338 * 10 8 6 14 14 C 1.34778 * 119.99485 * 301.42052 * 4 2 1 15 15 O 1.21576 * 119.99442 * 212.60143 * 14 4 2 16 16 C 1.47697 * 120.00499 * 32.60512 * 14 4 2 17 17 C 1.39680 * 120.07944 * 137.38360 * 16 14 4 18 18 C 1.37750 * 119.92063 * 180.02562 * 17 16 14 19 19 C 1.39018 * 120.07492 * 359.97438 * 18 17 16 20 20 N 1.39975 * 119.91556 * 179.97438 * 19 18 17 21 21 C 1.35136 * 127.39531 * 179.71027 * 20 19 18 22 22 N 1.30710 * 107.26587 * 179.83978 * 21 20 19 23 23 N 1.28413 * 110.65660 * 0.44668 * 22 21 20 24 24 N 1.28947 * 110.21791 * 359.71770 * 23 22 21 25 25 C 1.39015 * 120.16354 * 0.26108 * 19 18 17 26 26 C 1.37748 * 120.08094 * 359.48121 * 25 19 18 27 27 H 1.08996 * 109.46890 * 253.42803 * 1 2 3 28 28 H 1.09003 * 109.47609 * 13.43089 * 1 2 3 29 29 H 1.09006 * 109.47160 * 133.42887 * 1 2 3 30 30 H 1.09004 * 109.47411 * 240.00386 * 2 1 3 31 31 H 1.08998 * 109.47664 * 223.89641 * 3 2 1 32 32 H 1.09001 * 109.47400 * 343.90751 * 3 2 1 33 33 H 1.08999 * 109.47125 * 103.89900 * 3 2 1 34 34 H 1.09000 * 109.47296 * 30.00652 * 5 4 2 35 35 H 1.09001 * 109.47113 * 149.99895 * 5 4 2 36 36 H 0.96996 * 119.99902 * 179.97438 * 9 8 6 37 37 H 1.08003 * 120.04380 * 0.02562 * 17 16 14 38 38 H 1.08004 * 119.96385 * 180.02562 * 18 17 16 39 39 H 1.08003 * 126.36327 * 359.96230 * 21 20 19 40 40 H 1.08001 * 119.95784 * 179.72344 * 25 19 18 41 41 H 1.07994 * 120.04384 * 180.23492 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8860 -1.8633 1.0618 6 6 2.0404 -3.1090 0.9955 7 1 0.9642 -3.0345 1.0485 8 6 2.6406 -4.3437 0.8682 9 7 1.9025 -5.4307 0.8098 10 14 4.5019 -4.4725 0.7772 11 1 5.0553 -4.6212 2.1472 12 1 4.8770 -5.6550 -0.0392 13 1 5.0531 -3.2438 0.1513 14 6 1.6693 -0.2471 2.4200 15 8 2.4424 -0.3616 3.3513 16 6 0.3477 0.3779 2.6299 17 6 -0.4041 0.0617 3.7639 18 6 -1.6366 0.6462 3.9561 19 6 -2.1320 1.5502 3.0234 20 7 -3.3850 2.1417 3.2219 21 6 -4.0058 3.0370 2.4223 22 7 -5.1536 3.3232 2.9783 23 7 -5.2973 2.6776 4.0789 24 7 -4.2652 1.9365 4.2989 25 6 -1.3887 1.8636 1.8913 26 6 -0.1532 1.2870 1.6951 27 1 -0.3633 -0.2931 0.9850 28 1 -0.3634 0.9996 -0.2387 29 1 -0.3634 -0.7065 -0.7464 30 1 1.8933 -0.5138 -0.8900 31 1 2.8592 1.5383 -0.7125 32 1 1.2301 2.1142 -0.2849 33 1 2.3938 1.7028 0.9976 34 1 3.4764 -1.7760 0.1498 35 1 3.5529 -1.9223 1.9220 36 1 2.3248 -6.2993 0.7198 37 1 -0.0196 -0.6402 4.4891 38 1 -2.2183 0.4025 4.8329 39 1 -3.6251 3.4395 1.4952 40 1 -1.7788 2.5629 1.1666 41 1 0.4254 1.5338 0.8172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523701762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:39 Heat of formation + Delta-G solvation = 181.790637 kcal Electronic energy + Delta-G solvation = -26264.214677 eV Core-core repulsion = 22571.241876 eV Total energy + Delta-G solvation = -3692.972800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.31475 -42.43220 -39.78961 -38.10639 -36.33450 -35.14313 -33.76730 -33.39919 -31.85878 -31.45062 -29.67772 -27.98885 -26.70060 -25.21193 -24.66777 -23.64042 -23.23630 -22.52797 -20.17572 -19.75716 -19.11249 -17.97583 -17.72045 -17.60239 -17.23504 -16.55345 -16.43382 -16.28594 -15.83214 -15.40610 -15.03033 -14.76830 -14.54140 -14.42460 -14.37214 -13.93884 -13.88267 -13.62188 -13.46558 -13.28662 -13.26327 -12.69536 -12.53951 -12.32367 -12.24305 -12.16513 -11.99999 -11.90092 -11.70973 -11.64879 -11.32951 -10.97604 -10.85021 -10.00445 -9.47844 -9.28312 -8.35863 -6.41768 -0.90115 0.19823 0.32484 0.68981 1.16646 1.32588 1.36009 1.44119 1.52405 2.16597 2.29142 2.56297 2.98575 2.99751 3.31663 3.46720 3.65714 3.74630 3.82794 3.86492 4.02413 4.15042 4.17758 4.23030 4.41532 4.43558 4.59484 4.65505 4.79434 4.81055 4.87663 4.90173 4.94933 4.97262 5.04874 5.21963 5.23161 5.25901 5.40269 5.49991 5.65482 5.68942 6.23247 6.61028 6.62793 7.06242 7.25211 7.25716 8.80138 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021907 B = 0.003389 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.833493 B = 8260.322709 C = 8634.637714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.120 3.880 3 C -0.177 4.177 4 N -0.610 5.610 5 C 0.227 3.773 6 C -0.539 4.539 7 H 0.036 0.964 8 C 0.016 3.984 9 N -0.941 5.941 10 Si 0.941 3.059 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.237 1.237 14 C 0.566 3.434 15 O -0.577 6.577 16 C -0.156 4.156 17 C -0.057 4.057 18 C -0.131 4.131 19 C 0.151 3.849 20 N -0.327 5.327 21 C 0.251 3.749 22 N -0.358 5.358 23 N -0.060 5.060 24 N -0.106 5.106 25 C -0.136 4.136 26 C -0.050 4.050 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.303 0.697 40 H 0.202 0.798 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 21.034 -6.131 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.017 3.983 3 C -0.234 4.234 4 N -0.341 5.341 5 C 0.105 3.895 6 C -0.578 4.578 7 H 0.055 0.945 8 C -0.183 4.183 9 N -0.581 5.581 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.160 1.160 14 C 0.356 3.644 15 O -0.457 6.457 16 C -0.160 4.160 17 C -0.077 4.077 18 C -0.152 4.152 19 C 0.059 3.941 20 N -0.117 5.117 21 C -0.044 4.044 22 N -0.207 5.207 23 N -0.055 5.055 24 N -0.091 5.091 25 C -0.156 4.156 26 C -0.068 4.068 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.318 0.682 40 H 0.219 0.781 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.904 20.710 -4.671 22.036 hybrid contribution 1.407 -1.653 0.169 2.177 sum -4.497 19.057 -4.502 20.092 Atomic orbital electron populations 1.23782 0.94611 1.04544 1.02957 1.21522 0.95158 0.94177 0.87451 1.22721 1.03957 0.93675 1.03084 1.47797 1.51059 1.29914 1.05365 1.19389 0.90099 0.82717 0.97327 1.21603 0.94033 0.91301 1.50845 0.94547 1.25772 1.03484 0.95077 0.93956 1.70034 1.37913 0.98878 1.51272 0.85811 0.79625 0.79372 0.78768 1.20379 1.20206 1.16023 1.18584 0.86298 0.76953 0.82522 1.90688 1.53281 1.57463 1.44302 1.20216 0.95387 1.02178 0.98179 1.20976 0.93295 0.97820 0.95600 1.20710 0.96082 0.97907 1.00475 1.17852 0.81735 0.96702 0.97847 1.49070 1.15033 1.30835 1.16762 1.28657 0.88190 0.88122 0.99451 1.74407 1.18157 1.23612 1.04531 1.78086 1.15082 1.02884 1.09449 1.82692 0.97445 1.20873 1.08099 1.21187 0.94118 1.03574 0.96769 1.23130 0.96224 0.90254 0.97162 0.91033 0.85467 0.92669 0.88663 0.89898 0.86127 0.93073 0.93102 0.96440 0.92259 0.86137 0.84299 0.68242 0.78124 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.04 7.72 71.98 0.56 -3.49 16 2 C 0.12 2.93 3.27 44.99 0.15 3.08 16 3 C -0.18 -2.65 8.36 71.98 0.60 -2.05 16 4 N -0.61 -22.68 2.38 -805.71 -1.92 -24.60 16 5 C 0.23 10.40 4.39 85.64 0.38 10.78 16 6 C -0.54 -29.86 9.94 25.60 0.25 -29.60 16 7 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 8 C 0.02 0.89 5.47 84.65 0.46 1.36 16 9 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 10 Si 0.94 42.68 27.47 68.60 1.88 44.56 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 14 C 0.57 21.86 5.85 86.74 0.51 22.36 16 15 O -0.58 -27.23 16.80 -3.95 -0.07 -27.29 16 16 C -0.16 -4.48 4.27 -20.08 -0.09 -4.57 16 17 C -0.06 -1.68 9.65 22.50 0.22 -1.46 16 18 C -0.13 -3.17 9.68 22.34 0.22 -2.95 16 19 C 0.15 2.73 6.71 38.21 0.26 2.98 16 20 N -0.33 -5.99 3.85 -190.95 -0.73 -6.72 16 21 C 0.25 2.96 12.15 180.17 2.19 5.14 16 22 N -0.36 -7.38 12.15 -60.10 -0.73 -8.11 16 23 N -0.06 -1.58 13.39 37.02 0.50 -1.08 16 24 N -0.11 -2.71 13.31 37.02 0.49 -2.22 16 25 C -0.14 -1.49 9.20 22.34 0.21 -1.28 16 26 C -0.05 -0.85 4.88 22.51 0.11 -0.74 16 27 H 0.07 1.84 4.00 -11.06 -0.04 1.80 16 28 H 0.13 1.03 5.23 -2.39 -0.01 1.01 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.10 2.42 7.81 -2.38 -0.02 2.40 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 0.61 6.17 -2.39 -0.01 0.59 16 33 H 0.05 0.98 6.82 -2.39 -0.02 0.97 16 34 H 0.05 2.13 6.99 -2.39 -0.02 2.12 16 35 H 0.02 0.88 6.79 -2.39 -0.02 0.86 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16 38 H 0.14 3.37 7.75 -2.91 -0.02 3.34 16 39 H 0.30 -1.00 7.17 -2.91 -0.02 -1.02 16 40 H 0.20 -0.35 6.86 -2.91 -0.02 -0.37 16 41 H 0.21 2.50 1.06 -4.05 0.00 2.50 16 Total: -1.00 -85.03 332.95 6.74 -78.29 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.00 Total: 4.66 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.01 Total: -0.44 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.09 Total: -99.77 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.07 Total: -27.29 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.56 kcal Total: -85.03 6.74 -78.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523701762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.078 kcal (2) G-P(sol) polarization free energy of solvation -85.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds