Wall clock time and date at job start Tue Mar 31 2020 10:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35167 * 119.65276 * 2 1 4 4 C 1.41465 * 119.25026 * 179.97438 * 3 2 1 5 5 N 1.34090 * 120.67381 * 180.02562 * 4 3 2 6 6 C 1.33834 * 120.00628 * 355.13195 * 5 4 3 7 7 O 1.22186 * 119.99434 * 64.80907 * 6 5 4 8 8 N 1.34633 * 120.00765 * 244.80803 * 6 5 4 9 9 C 1.32600 * 120.00546 * 179.97438 * 8 6 5 10 10 C 1.41398 * 126.39859 * 0.02593 * 9 8 6 11 11 C 1.34829 * 108.24990 * 179.97438 * 10 9 8 12 12 N 1.36570 * 109.00196 * 359.97438 * 11 10 9 13 13 C 1.46504 * 125.84152 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46858 * 84.97916 * 13 12 11 15 15 H 1.07995 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99445 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99486 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00298 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46823 * 90.00330 * 18 16 14 20 20 H 1.48499 * 109.47047 * 210.00056 * 18 16 14 21 21 H 1.48495 * 109.47325 * 330.00140 * 18 16 14 22 22 N 1.37624 * 126.40060 * 179.71294 * 9 8 6 23 23 H 0.96994 * 126.38567 * 359.97438 * 22 9 8 24 24 C 1.41463 * 118.64255 * 359.78428 * 4 3 2 25 25 C 1.50696 * 120.37127 * 180.22016 * 24 4 3 26 26 C 1.35170 * 119.25018 * 0.44471 * 24 4 3 27 27 N 1.35606 * 119.64820 * 179.97438 * 2 1 3 28 28 H 0.96991 * 119.27326 * 359.97438 * 27 2 1 29 29 H 1.09005 * 109.47098 * 270.01955 * 1 2 3 30 30 H 1.09007 * 109.47159 * 30.01722 * 1 2 3 31 31 H 1.08996 * 109.47448 * 150.01377 * 1 2 3 32 32 H 1.08004 * 120.37376 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.87508 * 359.95693 * 10 9 8 34 34 H 1.08002 * 125.49527 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47319 * 204.98075 * 13 12 11 36 36 H 1.09000 * 109.47046 * 324.97984 * 13 12 11 37 37 H 0.97000 * 119.99822 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.47716 * 270.22034 * 25 24 4 39 39 H 1.09000 * 109.47416 * 30.22507 * 25 24 4 40 40 H 1.09002 * 109.47057 * 150.22358 * 25 24 4 41 41 H 1.07998 * 119.65153 * 179.79854 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1757 1.1747 0.0000 4 6 3.5903 1.1647 0.0006 5 7 4.2825 2.3132 0.0011 6 6 3.6389 3.4825 -0.0973 7 8 2.8817 3.8397 0.7927 8 7 3.8259 4.2653 -1.1766 9 6 3.1879 5.4236 -1.2742 10 6 2.2858 5.9668 -0.3305 11 6 1.8537 7.1562 -0.7956 12 7 2.4425 7.4021 -2.0031 13 6 2.2331 8.5908 -2.8335 14 6 3.1566 9.6909 -2.3777 15 1 3.8317 9.5218 -1.5519 16 6 3.1389 10.9138 -3.0144 17 7 3.9445 11.8741 -2.6164 18 14 1.9707 11.2065 -4.4424 19 1 0.6821 11.7351 -3.9273 20 1 2.5705 12.1905 -5.3789 21 1 1.7308 9.9266 -5.1561 22 7 3.2845 6.3244 -2.3102 23 1 3.8324 6.2306 -3.1050 24 6 4.2597 -0.0815 0.0058 25 6 5.7656 -0.1375 0.0115 26 6 3.5333 -1.2214 0.0009 27 7 2.1778 -1.1785 0.0005 28 1 1.6771 -2.0092 0.0013 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6361 2.1102 -0.0004 33 1 1.9931 5.5077 0.6022 34 1 1.1547 7.8092 -0.2941 35 1 2.4433 8.3480 -3.8750 36 1 1.1989 8.9221 -2.7393 37 1 3.9324 12.7342 -3.0645 38 1 6.1328 -0.1493 -1.0146 39 1 6.1598 0.7374 0.5284 40 1 6.0936 -1.0413 0.5251 41 1 4.0376 -2.1764 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526064255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:48 Heat of formation + Delta-G solvation = 134.113933 kcal Electronic energy + Delta-G solvation = -24859.354161 eV Core-core repulsion = 21164.313943 eV Total energy + Delta-G solvation = -3695.040217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88446 -40.64731 -38.47421 -35.38248 -34.19850 -33.60457 -32.76096 -31.31751 -30.97083 -30.69851 -28.90740 -26.98353 -25.98869 -24.16639 -22.64707 -22.01548 -21.27442 -21.01358 -18.96392 -18.21287 -17.36069 -17.11886 -16.69781 -16.03938 -15.55583 -15.08917 -14.95848 -14.87157 -14.47094 -14.06765 -13.68492 -13.47509 -13.32557 -13.09492 -12.93823 -12.92283 -12.60130 -12.54590 -12.52739 -12.24125 -12.17893 -11.48575 -11.45363 -11.02716 -10.99909 -10.61572 -10.08822 -9.98835 -9.56835 -9.30388 -8.99930 -8.96914 -8.67670 -8.17858 -7.18691 -6.74524 -6.46306 -4.54306 1.09286 1.31518 1.78241 2.15355 2.75778 2.99773 3.04422 3.08781 3.10458 3.62196 4.01802 4.21757 4.26405 4.47315 4.53442 4.81535 4.81929 5.01567 5.10041 5.10709 5.19443 5.28293 5.51293 5.58489 5.70358 5.80386 5.83262 5.88375 6.02427 6.11007 6.15784 6.29723 6.41664 6.55805 6.76400 6.80261 6.84884 6.99756 7.09019 7.50204 7.70052 7.91501 8.09867 8.32211 8.58755 8.74578 9.06169 9.69739 10.65379 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.002495 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.779465 B =11220.618817 C =11704.175405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.146 3.854 3 C -0.239 4.239 4 C 0.297 3.703 5 N -0.576 5.576 6 C 0.652 3.348 7 O -0.621 6.621 8 N -0.684 5.684 9 C 0.478 3.522 10 C -0.332 4.332 11 C 0.163 3.837 12 N -0.348 5.348 13 C 0.230 3.770 14 C -0.563 4.563 15 H 0.085 0.915 16 C 0.082 3.918 17 N -0.877 5.877 18 Si 0.875 3.125 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.265 1.265 22 N -0.472 5.472 23 H 0.444 0.556 24 C -0.156 4.156 25 C -0.087 4.087 26 C 0.107 3.893 27 N -0.596 5.596 28 H 0.413 0.587 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.183 0.817 34 H 0.187 0.813 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.272 0.728 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 -26.168 1.588 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.035 3.965 3 C -0.266 4.266 4 C 0.129 3.871 5 N -0.307 5.307 6 C 0.352 3.648 7 O -0.503 6.503 8 N -0.447 5.447 9 C 0.224 3.776 10 C -0.365 4.365 11 C 0.019 3.981 12 N -0.134 5.134 13 C 0.112 3.888 14 C -0.601 4.601 15 H 0.103 0.897 16 C -0.124 4.124 17 N -0.513 5.513 18 Si 0.701 3.299 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.190 1.190 22 N -0.196 5.196 23 H 0.291 0.709 24 C -0.165 4.165 25 C -0.144 4.144 26 C -0.021 4.021 27 N -0.202 5.202 28 H 0.248 0.752 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.200 0.800 34 H 0.204 0.796 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.254 -25.289 1.227 26.338 hybrid contribution -1.403 0.502 -0.669 1.634 sum -8.657 -24.788 0.558 26.262 Atomic orbital electron populations 1.20977 0.88364 1.04356 1.03966 1.20189 0.94378 0.85623 0.96267 1.21664 0.95300 0.97666 1.12014 1.18587 0.89117 0.91376 0.87975 1.68529 1.36146 0.97392 1.28681 1.18288 0.76542 0.86940 0.82986 1.90770 1.38058 1.77577 1.43906 1.68772 1.38502 1.07210 1.30171 1.19047 0.87653 0.87090 0.83806 1.22494 1.09341 0.98622 1.06013 1.22759 0.94780 0.96551 0.83969 1.47401 1.34530 1.12230 1.19262 1.20279 0.98857 0.79241 0.90413 1.21290 1.23012 0.95571 1.20230 0.89651 1.24840 0.95323 0.95430 0.96789 1.69867 1.36543 1.04168 1.40688 0.86882 0.81453 0.79112 0.82493 1.19392 1.20329 1.18961 1.44445 1.41153 1.11699 1.22335 0.70869 1.19295 0.97342 0.90066 1.09802 1.20382 0.89271 1.02526 1.02246 1.21442 0.82206 0.99739 0.98719 1.40845 1.05877 1.08148 1.65358 0.75155 0.89624 0.89129 0.90885 0.83599 0.79994 0.79608 0.93467 0.92334 0.91772 0.91581 0.90089 0.92557 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.07 36.01 0.36 -0.33 16 2 C 0.15 1.36 6.80 -82.02 -0.56 0.80 16 3 C -0.24 -3.54 8.65 -39.45 -0.34 -3.88 16 4 C 0.30 5.00 6.59 -84.42 -0.56 4.44 16 5 N -0.58 -12.30 9.66 -14.42 -0.14 -12.43 16 6 C 0.65 15.43 6.88 -87.89 -0.60 14.82 16 7 O -0.62 -15.26 12.75 4.75 0.06 -15.19 16 8 N -0.68 -16.02 10.62 -15.72 -0.17 -16.19 16 9 C 0.48 10.38 8.08 -155.31 -1.25 9.12 16 10 C -0.33 -6.74 9.52 -39.59 -0.38 -7.11 16 11 C 0.16 2.92 11.45 -16.65 -0.19 2.73 16 12 N -0.35 -6.77 3.64 -62.24 -0.23 -6.99 16 13 C 0.23 4.66 5.26 -5.19 -0.03 4.64 16 14 C -0.56 -14.24 9.94 -34.44 -0.34 -14.58 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.88 -24.69 13.96 55.43 0.77 -23.92 16 18 Si 0.87 18.44 27.47 -169.99 -4.67 13.78 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 22 N -0.47 -9.21 7.39 31.35 0.23 -8.98 16 23 H 0.44 7.71 8.96 -182.55 -1.64 6.07 16 24 C -0.16 -1.88 5.89 -104.49 -0.62 -2.50 16 25 C -0.09 -0.94 9.81 36.00 0.35 -0.58 16 26 C 0.11 0.77 10.82 -16.97 -0.18 0.59 16 27 N -0.60 -3.65 5.24 -9.31 -0.05 -3.70 16 28 H 0.41 0.79 8.77 -40.82 -0.36 0.43 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.15 2.56 6.35 -52.48 -0.33 2.22 16 33 H 0.18 3.87 5.76 -52.49 -0.30 3.57 16 34 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.05 0.92 7.20 -51.93 -0.37 0.55 16 36 H 0.06 1.08 7.57 -51.93 -0.39 0.68 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 40 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -38.50 351.97 -9.65 -48.14 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.33 Total: 10.02 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -4.43 Total: 10.18 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: 0.42 Total: -72.22 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.06 Total: -15.19 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.67 Total: 13.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.50 -9.65 -48.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526064255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.259 kcal (2) G-P(sol) polarization free energy of solvation -38.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds