Wall clock time and date at job start Tue Mar 31 2020 10:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35167 * 119.65276 * 2 1 4 4 C 1.41465 * 119.25026 * 179.97438 * 3 2 1 5 5 N 1.34090 * 120.67381 * 180.02562 * 4 3 2 6 6 C 1.33834 * 120.00628 * 355.13195 * 5 4 3 7 7 O 1.22186 * 119.99434 * 64.80907 * 6 5 4 8 8 N 1.34633 * 120.00765 * 244.80803 * 6 5 4 9 9 C 1.32600 * 120.00546 * 179.97438 * 8 6 5 10 10 C 1.41398 * 126.39859 * 0.02593 * 9 8 6 11 11 C 1.34829 * 108.24990 * 179.97438 * 10 9 8 12 12 N 1.36570 * 109.00196 * 359.97438 * 11 10 9 13 13 C 1.46504 * 125.84152 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46858 * 84.97916 * 13 12 11 15 15 H 1.07995 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99445 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99486 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00298 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46823 * 90.00330 * 18 16 14 20 20 H 1.48499 * 109.47047 * 210.00056 * 18 16 14 21 21 H 1.48495 * 109.47325 * 330.00140 * 18 16 14 22 22 N 1.37624 * 126.40060 * 179.71294 * 9 8 6 23 23 H 0.96994 * 126.38567 * 359.97438 * 22 9 8 24 24 C 1.41463 * 118.64255 * 359.78428 * 4 3 2 25 25 C 1.50696 * 120.37127 * 180.22016 * 24 4 3 26 26 C 1.35170 * 119.25018 * 0.44471 * 24 4 3 27 27 N 1.35606 * 119.64820 * 179.97438 * 2 1 3 28 28 H 0.96991 * 119.27326 * 359.97438 * 27 2 1 29 29 H 1.09005 * 109.47098 * 270.01955 * 1 2 3 30 30 H 1.09007 * 109.47159 * 30.01722 * 1 2 3 31 31 H 1.08996 * 109.47448 * 150.01377 * 1 2 3 32 32 H 1.08004 * 120.37376 * 359.97438 * 3 2 1 33 33 H 1.07999 * 125.87508 * 359.95693 * 10 9 8 34 34 H 1.08002 * 125.49527 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47319 * 204.98075 * 13 12 11 36 36 H 1.09000 * 109.47046 * 324.97984 * 13 12 11 37 37 H 0.97000 * 119.99822 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.47716 * 270.22034 * 25 24 4 39 39 H 1.09000 * 109.47416 * 30.22507 * 25 24 4 40 40 H 1.09002 * 109.47057 * 150.22358 * 25 24 4 41 41 H 1.07998 * 119.65153 * 179.79854 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1757 1.1747 0.0000 4 6 3.5903 1.1647 0.0006 5 7 4.2825 2.3132 0.0011 6 6 3.6389 3.4825 -0.0973 7 8 2.8817 3.8397 0.7927 8 7 3.8259 4.2653 -1.1766 9 6 3.1879 5.4236 -1.2742 10 6 2.2858 5.9668 -0.3305 11 6 1.8537 7.1562 -0.7956 12 7 2.4425 7.4021 -2.0031 13 6 2.2331 8.5908 -2.8335 14 6 3.1566 9.6909 -2.3777 15 1 3.8317 9.5218 -1.5519 16 6 3.1389 10.9138 -3.0144 17 7 3.9445 11.8741 -2.6164 18 14 1.9707 11.2065 -4.4424 19 1 0.6821 11.7351 -3.9273 20 1 2.5705 12.1905 -5.3789 21 1 1.7308 9.9266 -5.1561 22 7 3.2845 6.3244 -2.3102 23 1 3.8324 6.2306 -3.1050 24 6 4.2597 -0.0815 0.0058 25 6 5.7656 -0.1375 0.0115 26 6 3.5333 -1.2214 0.0009 27 7 2.1778 -1.1785 0.0005 28 1 1.6771 -2.0092 0.0013 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6361 2.1102 -0.0004 33 1 1.9931 5.5077 0.6022 34 1 1.1547 7.8092 -0.2941 35 1 2.4433 8.3480 -3.8750 36 1 1.1989 8.9221 -2.7393 37 1 3.9324 12.7342 -3.0645 38 1 6.1328 -0.1493 -1.0146 39 1 6.1598 0.7374 0.5284 40 1 6.0936 -1.0413 0.5251 41 1 4.0376 -2.1764 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526064255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:47 Heat of formation + Delta-G solvation = 101.787143 kcal Electronic energy + Delta-G solvation = -24860.755955 eV Core-core repulsion = 21164.313943 eV Total energy + Delta-G solvation = -3696.442012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28472 -41.76177 -39.94650 -36.53701 -35.79117 -34.70797 -34.43641 -32.71187 -32.53134 -32.03448 -29.84066 -28.70018 -26.72282 -25.43507 -24.24853 -23.18339 -22.74570 -22.38609 -20.36877 -19.27928 -18.98997 -18.53559 -17.79340 -17.42317 -17.12655 -16.62464 -16.24267 -15.97330 -15.79822 -15.60641 -15.03342 -14.69601 -14.55944 -14.28248 -14.15275 -14.06098 -13.89979 -13.81459 -13.33662 -13.17752 -13.14575 -13.07326 -12.60686 -12.35962 -12.29882 -12.16664 -11.85825 -11.54484 -11.28203 -10.92602 -10.56114 -10.16024 -10.09761 -9.79113 -8.48741 -8.42162 -8.24868 -6.57920 0.02892 0.27573 0.39869 0.64891 1.37693 1.39953 1.48652 1.55337 2.03218 2.25112 2.52007 2.72718 2.90813 3.01641 3.55720 3.67702 3.86364 3.99511 4.08693 4.17084 4.25759 4.37687 4.46420 4.56352 4.66407 4.70023 4.80832 4.82157 4.91850 5.02199 5.10420 5.12921 5.13414 5.22333 5.28911 5.62962 5.68349 5.90719 5.93757 6.02396 6.16927 6.39364 6.48540 6.55239 6.76818 7.08183 7.36329 8.13213 8.73258 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.002495 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.779465 B =11220.618817 C =11704.175405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.194 3.806 3 C -0.300 4.300 4 C 0.289 3.711 5 N -0.657 5.657 6 C 0.648 3.352 7 O -0.657 6.657 8 N -0.711 5.711 9 C 0.459 3.541 10 C -0.350 4.350 11 C 0.184 3.816 12 N -0.350 5.350 13 C 0.236 3.764 14 C -0.569 4.569 15 H 0.029 0.971 16 C 0.021 3.979 17 N -0.937 5.937 18 Si 0.955 3.045 19 H -0.253 1.253 20 H -0.287 1.287 21 H -0.233 1.233 22 N -0.471 5.471 23 H 0.451 0.549 24 C -0.205 4.205 25 C -0.079 4.079 26 C 0.162 3.838 27 N -0.561 5.561 28 H 0.446 0.554 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.168 0.832 34 H 0.230 0.770 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.274 0.726 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -30.841 0.119 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 C -0.328 4.328 4 C 0.131 3.869 5 N -0.396 5.396 6 C 0.349 3.651 7 O -0.542 6.542 8 N -0.475 5.475 9 C 0.205 3.795 10 C -0.383 4.383 11 C 0.040 3.960 12 N -0.136 5.136 13 C 0.118 3.882 14 C -0.607 4.607 15 H 0.047 0.953 16 C -0.180 4.180 17 N -0.575 5.575 18 Si 0.775 3.225 19 H -0.177 1.177 20 H -0.212 1.212 21 H -0.156 1.156 22 N -0.195 5.195 23 H 0.299 0.701 24 C -0.214 4.214 25 C -0.136 4.136 26 C 0.032 3.968 27 N -0.167 5.167 28 H 0.288 0.712 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.185 0.815 34 H 0.246 0.754 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.118 0.882 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.705 -30.113 -0.247 31.960 hybrid contribution -0.428 1.550 -0.103 1.611 sum -11.133 -28.563 -0.350 30.658 Atomic orbital electron populations 1.21164 0.85090 1.05999 1.05529 1.20522 0.96192 0.84851 0.90464 1.21393 0.94858 0.98516 1.18049 1.19346 0.90349 0.91971 0.85250 1.68408 1.36012 0.97716 1.37509 1.18645 0.75986 0.88026 0.82398 1.90677 1.40179 1.78477 1.44860 1.68806 1.39531 1.08162 1.30960 1.19307 0.88172 0.87287 0.84743 1.22328 1.10303 0.99876 1.05797 1.23345 0.93993 0.95753 0.82870 1.47472 1.34321 1.12009 1.19751 1.20272 0.99328 0.77612 0.91037 1.21446 1.22974 0.97580 1.18697 0.95310 1.25902 0.97212 0.94740 1.00111 1.70052 1.39361 1.05066 1.43010 0.85633 0.78788 0.80057 0.77981 1.17715 1.21249 1.15622 1.44449 1.41408 1.11464 1.22218 0.70079 1.19528 0.98420 0.89644 1.13778 1.20293 0.88747 1.02556 1.02023 1.22312 0.82005 1.00507 0.92017 1.41179 1.06232 1.08609 1.60638 0.71233 0.87842 0.90381 0.86387 0.87697 0.81501 0.75354 0.91569 0.88527 0.91714 0.91961 0.94426 0.88241 0.75084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.07 71.24 0.72 -0.21 16 2 C 0.19 3.06 6.80 41.27 0.28 3.34 16 3 C -0.30 -9.38 8.65 22.36 0.19 -9.19 16 4 C 0.29 10.43 6.59 40.39 0.27 10.69 16 5 N -0.66 -31.40 9.66 -318.09 -3.07 -34.48 16 6 C 0.65 34.29 6.88 179.39 1.23 35.52 16 7 O -0.66 -36.14 12.75 -5.93 -0.08 -36.22 16 8 N -0.71 -36.79 10.62 -321.75 -3.42 -40.21 16 9 C 0.46 21.52 8.08 134.03 1.08 22.60 16 10 C -0.35 -15.23 9.52 22.26 0.21 -15.02 16 11 C 0.18 6.65 11.45 83.17 0.95 7.60 16 12 N -0.35 -13.60 3.64 -350.84 -1.28 -14.88 16 13 C 0.24 9.13 5.26 85.63 0.45 9.59 16 14 C -0.57 -29.24 9.94 25.60 0.25 -28.98 16 15 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 16 C 0.02 1.08 5.47 84.65 0.46 1.54 16 17 N -0.94 -54.61 13.96 21.45 0.30 -54.31 16 18 Si 0.95 36.84 27.47 68.60 1.88 38.72 16 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.29 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.23 -7.78 6.54 99.48 0.65 -7.13 16 22 N -0.47 -19.20 7.39 -54.72 -0.40 -19.61 16 23 H 0.45 16.43 8.96 -213.29 -1.91 14.52 16 24 C -0.21 -4.71 5.89 -19.78 -0.12 -4.83 16 25 C -0.08 -1.68 9.81 71.23 0.70 -0.99 16 26 C 0.16 1.42 10.82 83.40 0.90 2.32 16 27 N -0.56 -3.51 5.24 -183.35 -0.96 -4.47 16 28 H 0.45 -2.04 8.77 -92.71 -0.81 -2.85 16 29 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.91 8.07 -2.38 -0.02 0.90 16 31 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.10 4.16 6.35 -2.91 -0.02 4.14 16 33 H 0.17 7.83 5.76 -2.91 -0.02 7.81 16 34 H 0.23 6.04 8.06 -2.91 -0.02 6.02 16 35 H 0.07 2.38 7.20 -2.39 -0.02 2.36 16 36 H 0.10 3.15 7.57 -2.39 -0.02 3.13 16 37 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.13 7.58 -2.39 -0.02 1.11 16 40 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.23 -0.84 8.06 -2.91 -0.02 -0.86 16 Total: -1.00 -101.67 351.97 -1.12 -102.79 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: -1.69 Total: 28.67 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 7.59 Total: 33.99 kcal Atomic # 7 Polarization: -159.12 SS G_CDS: -8.83 Total: -167.95 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.08 Total: -36.22 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 1.88 Total: 38.72 kcal Total: -101.67 -1.12 -102.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526064255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.576 kcal (2) G-P(sol) polarization free energy of solvation -101.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds