Wall clock time and date at job start Tue Mar 31 2020 11:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47328 * 2 1 4 4 C 1.52995 * 109.47424 * 239.99778 * 2 1 3 5 5 C 1.50706 * 109.47260 * 60.00107 * 4 2 1 6 6 H 1.08005 * 119.99455 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00130 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47077 * 59.99873 * 9 7 5 11 11 H 1.48496 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47190 * 300.00178 * 9 7 5 13 13 C 1.52998 * 109.46965 * 119.99914 * 2 1 3 14 14 N 1.46508 * 109.47109 * 300.00039 * 13 2 1 15 15 C 1.39691 * 119.99701 * 180.02562 * 14 13 2 16 16 C 1.39042 * 120.00826 * 359.97438 * 15 14 13 17 17 C 1.38198 * 120.21646 * 180.02562 * 16 15 14 18 18 C 1.38027 * 120.22710 * 359.76130 * 17 16 15 19 19 C 1.39596 * 119.99954 * 0.51604 * 18 17 16 20 20 C 1.47839 * 120.10489 * 179.73859 * 19 18 17 21 21 C 1.34787 * 125.27280 * 359.72723 * 20 19 18 22 22 C 1.37965 * 114.70696 * 180.02562 * 21 20 19 23 23 C 1.33614 * 115.06306 * 0.27420 * 22 21 20 24 24 S 1.75864 * 109.75985 * 359.59653 * 23 22 21 25 25 C 1.38628 * 119.99824 * 180.02562 * 15 14 13 26 26 H 1.09004 * 109.47248 * 300.00483 * 1 2 3 27 27 H 1.09000 * 109.46612 * 59.99984 * 1 2 3 28 28 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47202 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46831 * 299.99878 * 3 2 1 31 31 H 1.08997 * 109.46716 * 59.99641 * 3 2 1 32 32 H 1.08998 * 109.47538 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47005 * 300.00726 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47464 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47415 * 59.99775 * 13 2 1 37 37 H 0.97002 * 119.99597 * 0.02562 * 14 13 2 38 38 H 1.08002 * 119.88798 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.88427 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.00318 * 180.27990 * 18 17 16 41 41 H 1.08005 * 122.64603 * 359.97438 * 21 20 19 42 42 H 1.08002 * 122.46493 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.11794 * 179.72535 * 23 22 21 44 44 H 1.08003 * 120.11568 * 359.95365 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6258 -1.5522 -3.8526 9 14 1.2485 0.3987 -5.2572 10 1 1.7445 1.7984 -5.2573 11 1 1.7424 -0.3021 -6.4697 12 1 -0.2365 0.3999 -5.2572 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4455 15 6 1.8895 -0.5075 3.7142 16 6 2.6888 -1.6380 3.8419 17 6 3.0253 -2.1139 5.0950 18 6 2.5742 -1.4674 6.2280 19 6 1.7664 -0.3351 6.1106 20 6 1.2772 0.3558 7.3226 21 6 1.5404 -0.0172 8.5908 22 6 0.9714 0.7857 9.5579 23 6 0.2435 1.8044 9.0914 24 16 0.2609 1.7914 7.3329 25 6 1.4269 0.1457 4.8461 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7489 -1.2492 34 1 2.8595 -1.8840 -4.7335 35 1 3.1299 -0.7209 1.2496 36 1 1.6766 -1.7488 1.2493 37 1 0.9936 0.7579 2.3564 38 1 3.0479 -2.1458 2.9590 39 1 3.6469 -2.9922 5.1880 40 1 2.8431 -1.8399 7.2055 41 1 2.1480 -0.8772 8.8310 42 1 1.1008 0.6013 10.6141 43 1 -0.2755 2.5281 9.7023 44 1 0.8058 1.0239 4.7491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533212167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:45 Heat of formation + Delta-G solvation = 39.316632 kcal Electronic energy + Delta-G solvation = -22697.058428 eV Core-core repulsion = 19511.907954 eV Total energy + Delta-G solvation = -3185.150473 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.58981 -38.06129 -37.21169 -34.34626 -32.35308 -31.90549 -29.57466 -27.93938 -26.95845 -26.51514 -25.90737 -24.40495 -22.89037 -22.46885 -21.22848 -19.08334 -18.20061 -17.95684 -16.49864 -16.31236 -15.93216 -15.55199 -15.16117 -14.54994 -14.42994 -13.94243 -13.72197 -13.63586 -13.21575 -13.04431 -12.90323 -12.77752 -12.68661 -12.34590 -12.13606 -12.07796 -11.45936 -11.26035 -11.25226 -11.02480 -10.88213 -10.76617 -10.66071 -10.38443 -10.27848 -10.17673 -9.80616 -9.49614 -9.22807 -8.96733 -8.70977 -8.38493 -8.14018 -7.20785 -6.02977 -4.04052 0.37454 1.39708 1.61331 1.78586 1.80129 2.66710 3.30335 3.35629 3.37122 3.68551 4.00927 4.43118 4.53153 4.81889 4.95694 5.13166 5.21621 5.31224 5.32645 5.42012 5.46322 5.57789 5.58724 5.67990 5.74558 5.83731 5.93861 6.12150 6.14941 6.16147 6.19619 6.25347 6.36669 6.40110 6.53368 6.62042 6.63337 6.65292 6.88927 7.02815 7.05409 7.09205 7.55161 7.59111 7.71976 7.95382 7.95778 8.38035 9.00249 9.59187 11.08458 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.002352 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.623132 B =11903.023033 C =12683.274507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.131 3.869 14 N -0.737 5.737 15 C 0.232 3.768 16 C -0.193 4.193 17 C -0.067 4.067 18 C -0.169 4.169 19 C 0.021 3.979 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.225 4.225 24 S 0.117 5.883 25 C -0.196 4.196 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 3.412 24.559 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 N -0.365 5.365 15 C 0.125 3.875 16 C -0.216 4.216 17 C -0.086 4.086 18 C -0.191 4.191 19 C 0.018 3.982 20 C -0.245 4.245 21 C -0.168 4.168 22 C -0.162 4.162 23 C -0.361 4.361 24 S 0.383 5.617 25 C -0.219 4.219 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.181 0.819 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.936 4.154 23.139 23.692 hybrid contribution 0.103 -0.151 0.165 0.246 sum -2.832 4.003 23.304 23.815 Atomic orbital electron populations 1.21745 0.95296 1.01095 1.00218 1.20857 0.95463 0.95846 0.94908 1.21746 1.00442 0.95949 1.00218 1.19088 0.96247 0.95171 0.89588 1.21142 1.31231 1.12058 0.90531 0.92351 1.25009 0.95305 0.95090 0.99089 1.69947 1.36962 1.22980 1.23567 0.86704 0.79163 0.79783 0.82620 1.20318 1.21378 1.20323 1.21618 0.98153 0.95786 0.83656 1.45071 1.56444 1.32678 1.02270 1.17732 0.92172 0.92166 0.85387 1.20822 1.04048 0.98466 0.98258 1.20781 0.97671 0.98487 0.91683 1.20784 1.02559 0.97271 0.98487 1.17674 0.96705 0.94469 0.89308 1.23118 1.04690 1.00235 0.96436 1.20338 1.03370 1.02207 0.90868 1.20066 0.99573 0.95736 1.00807 1.25737 1.07912 1.04869 0.97539 1.84282 1.48689 1.25567 1.03134 1.20513 1.07623 1.03136 0.90678 0.95193 0.91552 0.93438 0.93440 0.91552 0.95193 0.96425 0.96424 0.92982 0.92530 0.92526 0.76574 0.85690 0.85984 0.86457 0.84046 0.84302 0.81946 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.72 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.13 2.15 3.80 -4.04 -0.02 2.13 16 14 N -0.74 -10.63 5.14 -58.67 -0.30 -10.93 16 15 C 0.23 3.27 6.65 -83.83 -0.56 2.71 16 16 C -0.19 -2.60 9.31 -39.30 -0.37 -2.97 16 17 C -0.07 -0.79 10.02 -39.67 -0.40 -1.19 16 18 C -0.17 -1.96 9.54 -39.15 -0.37 -2.33 16 19 C 0.02 0.26 5.87 -105.00 -0.62 -0.35 16 20 C -0.13 -1.45 6.37 -36.88 -0.24 -1.68 16 21 C -0.14 -1.35 9.65 -40.90 -0.39 -1.74 16 22 C -0.13 -1.11 10.16 -41.30 -0.42 -1.53 16 23 C -0.22 -1.90 11.22 29.11 0.33 -1.58 16 24 S 0.12 1.18 22.26 -107.50 -2.39 -1.21 16 25 C -0.20 -2.60 9.44 -38.98 -0.37 -2.96 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 36 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 37 H 0.40 5.44 6.17 -40.82 -0.25 5.19 16 38 H 0.13 1.67 6.71 -52.49 -0.35 1.32 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.10 6.75 -52.49 -0.35 0.75 16 41 H 0.14 1.14 6.89 -52.48 -0.36 0.78 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.44 7.28 -52.48 -0.38 1.05 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -28.73 364.74 -11.18 -39.90 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.32 Total: 4.29 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -3.37 Total: -28.28 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.44 Total: -36.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.39 Total: -1.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.73 -11.18 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533212167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.219 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds