Wall clock time and date at job start Tue Mar 31 2020 11:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47328 * 2 1 4 4 C 1.52995 * 109.47424 * 239.99778 * 2 1 3 5 5 C 1.50706 * 109.47260 * 60.00107 * 4 2 1 6 6 H 1.08005 * 119.99455 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00130 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00118 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99863 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47077 * 59.99873 * 9 7 5 11 11 H 1.48496 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47190 * 300.00178 * 9 7 5 13 13 C 1.52998 * 109.46965 * 119.99914 * 2 1 3 14 14 N 1.46508 * 109.47109 * 300.00039 * 13 2 1 15 15 C 1.39691 * 119.99701 * 180.02562 * 14 13 2 16 16 C 1.39042 * 120.00826 * 359.97438 * 15 14 13 17 17 C 1.38198 * 120.21646 * 180.02562 * 16 15 14 18 18 C 1.38027 * 120.22710 * 359.76130 * 17 16 15 19 19 C 1.39596 * 119.99954 * 0.51604 * 18 17 16 20 20 C 1.47839 * 120.10489 * 179.73859 * 19 18 17 21 21 C 1.34787 * 125.27280 * 359.72723 * 20 19 18 22 22 C 1.37965 * 114.70696 * 180.02562 * 21 20 19 23 23 C 1.33614 * 115.06306 * 0.27420 * 22 21 20 24 24 S 1.75864 * 109.75985 * 359.59653 * 23 22 21 25 25 C 1.38628 * 119.99824 * 180.02562 * 15 14 13 26 26 H 1.09004 * 109.47248 * 300.00483 * 1 2 3 27 27 H 1.09000 * 109.46612 * 59.99984 * 1 2 3 28 28 H 1.08994 * 109.47323 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47202 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46831 * 299.99878 * 3 2 1 31 31 H 1.08997 * 109.46716 * 59.99641 * 3 2 1 32 32 H 1.08998 * 109.47538 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.47005 * 300.00726 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47464 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.47415 * 59.99775 * 13 2 1 37 37 H 0.97002 * 119.99597 * 0.02562 * 14 13 2 38 38 H 1.08002 * 119.88798 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.88427 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.00318 * 180.27990 * 18 17 16 41 41 H 1.08005 * 122.64603 * 359.97438 * 21 20 19 42 42 H 1.08002 * 122.46493 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.11794 * 179.72535 * 23 22 21 44 44 H 1.08003 * 120.11568 * 359.95365 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6258 -1.5522 -3.8526 9 14 1.2485 0.3987 -5.2572 10 1 1.7445 1.7984 -5.2573 11 1 1.7424 -0.3021 -6.4697 12 1 -0.2365 0.3999 -5.2572 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4455 15 6 1.8895 -0.5075 3.7142 16 6 2.6888 -1.6380 3.8419 17 6 3.0253 -2.1139 5.0950 18 6 2.5742 -1.4674 6.2280 19 6 1.7664 -0.3351 6.1106 20 6 1.2772 0.3558 7.3226 21 6 1.5404 -0.0172 8.5908 22 6 0.9714 0.7857 9.5579 23 6 0.2435 1.8044 9.0914 24 16 0.2609 1.7914 7.3329 25 6 1.4269 0.1457 4.8461 26 1 -0.3634 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7489 -1.2492 34 1 2.8595 -1.8840 -4.7335 35 1 3.1299 -0.7209 1.2496 36 1 1.6766 -1.7488 1.2493 37 1 0.9936 0.7579 2.3564 38 1 3.0479 -2.1458 2.9590 39 1 3.6469 -2.9922 5.1880 40 1 2.8431 -1.8399 7.2055 41 1 2.1480 -0.8772 8.8310 42 1 1.1008 0.6013 10.6141 43 1 -0.2755 2.5281 9.7023 44 1 0.8058 1.0239 4.7491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533212167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:44 Heat of formation + Delta-G solvation = 26.710072 kcal Electronic energy + Delta-G solvation = -22697.605089 eV Core-core repulsion = 19511.907954 eV Total energy + Delta-G solvation = -3185.697135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.60418 -39.16715 -38.25929 -35.68373 -34.22887 -32.81558 -30.70321 -29.08961 -28.52643 -27.99107 -27.23428 -25.34850 -24.55845 -23.42373 -22.22498 -19.92869 -19.64465 -18.82501 -18.36530 -17.41351 -16.96838 -16.61494 -16.25633 -16.17592 -15.80285 -15.02823 -14.89876 -14.61716 -14.45244 -14.31763 -14.14230 -14.01067 -13.91198 -13.41488 -13.36540 -13.08027 -12.85609 -12.76854 -12.62409 -12.34713 -12.32108 -12.28538 -12.11883 -11.95199 -11.60810 -11.52798 -11.06229 -10.99111 -10.85840 -10.50893 -10.40135 -9.44153 -8.99774 -8.27591 -8.14840 -6.21855 -0.41991 0.67544 0.67813 0.90295 1.10710 1.41403 1.42851 1.50158 1.93654 2.41326 2.55087 3.04467 3.19437 3.68774 3.97473 4.04662 4.09740 4.21084 4.21786 4.35149 4.38214 4.53230 4.60323 4.67159 4.71963 4.74344 4.75482 4.87472 4.95298 5.00232 5.09487 5.12324 5.16467 5.37813 5.39298 5.42141 5.47555 5.49891 5.53279 5.54655 5.63432 5.72737 5.79685 5.88953 5.93931 6.29571 6.44208 6.86418 6.92733 7.45394 8.97134 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.002352 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.623132 B =11903.023033 C =12683.274507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.148 3.852 14 N -0.736 5.736 15 C 0.216 3.784 16 C -0.213 4.213 17 C -0.066 4.066 18 C -0.169 4.169 19 C 0.017 3.983 20 C -0.160 4.160 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.214 4.214 24 S 0.093 5.907 25 C -0.205 4.205 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.060 0.940 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.260 0.740 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.402 0.598 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.158 0.842 42 H 0.167 0.833 43 H 0.188 0.812 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 4.539 27.170 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.004 3.996 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.194 1.194 13 C 0.024 3.976 14 N -0.365 5.365 15 C 0.111 3.889 16 C -0.236 4.236 17 C -0.085 4.085 18 C -0.191 4.191 19 C 0.015 3.985 20 C -0.277 4.277 21 C -0.160 4.160 22 C -0.169 4.169 23 C -0.350 4.350 24 S 0.359 5.641 25 C -0.228 4.228 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.239 0.761 38 H 0.136 0.864 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.185 0.815 43 H 0.206 0.794 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.741 5.294 25.776 26.579 hybrid contribution 0.358 -0.511 -0.443 0.765 sum -3.384 4.782 25.334 26.002 Atomic orbital electron populations 1.21663 0.94237 1.00827 1.00996 1.20663 0.96205 0.96069 0.93459 1.21664 0.99907 0.95157 1.00995 1.18954 0.94395 0.94218 0.92000 1.21550 1.30485 1.12022 0.91313 0.91491 1.25897 0.95702 0.95895 1.02524 1.70091 1.38659 1.24747 1.24140 0.85645 0.78898 0.78774 0.78601 1.19357 1.21483 1.19367 1.21222 0.97540 0.95229 0.83631 1.44803 1.57054 1.32874 1.01781 1.17862 0.92990 0.92784 0.85237 1.20949 1.04824 0.98831 0.98978 1.21074 0.97378 0.99025 0.91017 1.21109 1.01748 0.96736 0.99518 1.17918 0.96374 0.94673 0.89583 1.23149 1.06599 1.01375 0.96609 1.20684 1.02426 1.02366 0.90499 1.20388 0.99204 0.95340 1.02009 1.26119 1.07286 1.05129 0.96420 1.84344 1.48961 1.25620 1.05205 1.20606 1.07978 1.03434 0.90831 0.92066 0.92997 0.94257 0.94257 0.92996 0.92067 0.99209 0.99211 0.93131 0.93325 0.93322 0.76095 0.86381 0.83618 0.84028 0.82459 0.81545 0.79440 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 2 C -0.06 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 4 C 0.04 2.09 4.04 29.85 0.12 2.22 16 5 C -0.52 -27.68 7.65 25.60 0.20 -27.48 16 6 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -56.21 13.29 21.45 0.28 -55.92 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.15 4.95 3.80 86.38 0.33 5.28 16 14 N -0.74 -20.99 5.14 -339.52 -1.74 -22.73 16 15 C 0.22 6.04 6.65 38.18 0.25 6.30 16 16 C -0.21 -5.73 9.31 22.45 0.21 -5.52 16 17 C -0.07 -1.48 10.02 22.21 0.22 -1.25 16 18 C -0.17 -3.61 9.54 22.55 0.22 -3.40 16 19 C 0.02 0.41 5.87 -20.11 -0.12 0.29 16 20 C -0.16 -3.38 6.37 24.02 0.15 -3.23 16 21 C -0.13 -2.17 9.65 21.41 0.21 -1.96 16 22 C -0.14 -1.91 10.16 21.16 0.21 -1.69 16 23 C -0.21 -3.01 11.22 66.77 0.75 -2.26 16 24 S 0.09 1.74 22.26 -56.49 -1.26 0.49 16 25 C -0.20 -5.32 9.44 22.66 0.21 -5.11 16 26 H 0.06 1.76 6.86 -2.38 -0.02 1.74 16 27 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.06 1.75 6.86 -2.39 -0.02 1.74 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 36 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 37 H 0.40 10.53 6.17 -92.71 -0.57 9.96 16 38 H 0.12 3.26 6.71 -2.91 -0.02 3.24 16 39 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.14 2.24 6.75 -2.91 -0.02 2.22 16 41 H 0.16 2.02 6.89 -2.91 -0.02 2.00 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.12 2.92 7.28 -2.91 -0.02 2.90 16 Total: -1.00 -63.23 364.74 4.30 -58.93 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.43 Total: 20.73 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 4.56 Total: -47.22 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.46 Total: -78.65 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.26 Total: 0.49 kcal Total: -63.23 4.30 -58.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533212167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.645 kcal (2) G-P(sol) polarization free energy of solvation -63.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds