Wall clock time and date at job start Tue Mar 31 2020 10:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47493 * 2 1 4 4 C 1.33383 * 125.20368 * 89.99567 * 3 2 1 5 5 C 1.38425 * 114.92174 * 179.97438 * 4 3 2 6 6 C 1.33390 * 114.92123 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.20296 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47053 * 90.00706 * 7 6 5 9 9 C 1.46900 * 111.00095 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47017 * 324.99929 * 9 8 7 11 11 C 1.52998 * 109.47065 * 204.99668 * 9 8 7 12 12 C 1.50700 * 109.46762 * 65.00246 * 11 9 8 13 13 H 1.07996 * 120.00274 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99626 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00429 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47140 * 90.00230 * 16 14 12 18 18 H 1.48506 * 109.47462 * 210.00081 * 16 14 12 19 19 H 1.48503 * 109.47069 * 330.00173 * 16 14 12 20 20 C 1.50700 * 109.46784 * 84.99832 * 9 8 7 21 21 C 1.38239 * 120.00177 * 39.73010 * 20 9 8 22 22 C 1.38234 * 120.00409 * 179.81141 * 21 20 9 23 23 C 1.38236 * 119.99426 * 0.39148 * 22 21 20 24 24 C 1.38233 * 120.00532 * 359.85917 * 23 22 21 25 25 C 1.38227 * 120.00060 * 219.99699 * 20 9 8 26 26 S 1.75887 * 125.19993 * 269.96118 * 3 2 1 27 27 H 1.08997 * 109.47321 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47043 * 300.00160 * 1 2 3 29 29 H 1.09004 * 109.47324 * 60.00066 * 1 2 3 30 30 H 1.08998 * 109.47235 * 239.99655 * 2 1 3 31 31 H 1.09004 * 109.47324 * 119.99934 * 2 1 3 32 32 H 1.08001 * 122.54319 * 359.97438 * 4 3 2 33 33 H 1.07997 * 122.54292 * 179.73691 * 5 4 3 34 34 H 1.08998 * 109.47062 * 210.00206 * 7 6 5 35 35 H 1.08994 * 109.47215 * 330.00270 * 7 6 5 36 36 H 1.00901 * 110.99942 * 56.03857 * 8 7 6 37 37 H 1.08995 * 109.47040 * 184.99971 * 11 9 8 38 38 H 1.09001 * 109.47337 * 305.00466 * 11 9 8 39 39 H 0.96999 * 120.00550 * 179.97438 * 15 14 12 40 40 H 1.08005 * 119.99942 * 359.97438 * 21 20 9 41 41 H 1.07994 * 120.00372 * 180.22775 * 22 21 20 42 42 H 1.08001 * 120.00016 * 179.84090 * 23 22 21 43 43 H 1.07992 * 120.00604 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00499 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7433 3.4297 0.8428 6 6 2.8567 3.7471 -0.4478 7 6 3.3274 5.0773 -0.9771 8 7 4.7861 5.0479 -1.1480 9 6 5.2817 6.3308 -1.6644 10 1 4.5492 6.7527 -2.3526 11 6 6.6041 6.1075 -2.4008 12 6 6.3626 5.2539 -3.6190 13 1 5.3659 4.9052 -3.8452 14 6 7.4144 4.9182 -4.4449 15 7 8.6283 5.3424 -4.1693 16 14 7.1151 3.8608 -5.9554 17 1 6.8060 4.7329 -7.1169 18 1 8.3310 3.0597 -6.2478 19 1 5.9706 2.9490 -5.7025 20 6 5.5001 7.2832 -0.5172 21 6 6.0379 6.8233 0.6703 22 6 6.2419 7.6977 1.7214 23 6 5.9006 9.0305 1.5876 24 6 5.3580 9.4896 0.4020 25 6 5.1576 8.6158 -0.6504 26 16 2.3713 2.3763 -1.4373 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1518 1.7603 2.0895 33 1 2.9841 4.1232 1.6349 34 1 2.8529 5.2743 -1.9384 35 1 3.0599 5.8642 -0.2719 36 1 5.0647 4.2853 -1.7472 37 1 7.0163 7.0690 -2.7067 38 1 7.3084 5.6043 -1.7384 39 1 9.3683 5.1060 -4.7502 40 1 6.3012 5.7811 0.7761 41 1 6.6655 7.3391 2.6478 42 1 6.0575 9.7133 2.4096 43 1 5.0909 10.5307 0.2976 44 1 4.7338 8.9745 -1.5767 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533360607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:44 Heat of formation + Delta-G solvation = 37.421455 kcal Electronic energy + Delta-G solvation = -23038.069069 eV Core-core repulsion = 19852.836415 eV Total energy + Delta-G solvation = -3185.232654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.99171 -38.03891 -36.14584 -34.04163 -32.74985 -31.36726 -30.39137 -29.20229 -27.92976 -25.51185 -24.30397 -22.73395 -22.14958 -21.94102 -21.84854 -19.59956 -18.66189 -16.85028 -16.54027 -16.07780 -15.49521 -15.01099 -14.77800 -14.61821 -14.29649 -14.17928 -13.94001 -13.63340 -13.17365 -12.95566 -12.78789 -12.51600 -12.35036 -12.05814 -12.05328 -11.87017 -11.77804 -11.37693 -11.23558 -11.07785 -10.95549 -10.72938 -10.61649 -10.50077 -10.47219 -10.30849 -9.62773 -9.20662 -8.48588 -8.41560 -8.35557 -8.27502 -8.06175 -7.80160 -6.06719 -4.11159 1.14759 1.77188 1.86276 1.91762 2.18628 2.90976 3.27671 3.34866 3.37176 4.29344 4.40905 4.68629 4.86186 4.92892 5.11618 5.14768 5.31149 5.33569 5.37507 5.40227 5.45938 5.54702 5.64367 5.68083 5.70088 5.74716 5.88642 5.94480 6.01262 6.02716 6.07891 6.25294 6.34459 6.43363 6.49113 6.55182 6.70000 6.71238 6.91605 6.98375 7.18414 7.41686 7.52552 7.57536 7.89836 7.93678 8.13140 8.28201 8.94094 9.53594 11.03725 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.004889 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.025665 B = 5725.318541 C = 8714.082993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.185 4.185 4 C -0.136 4.136 5 C -0.127 4.127 6 C -0.157 4.157 7 C 0.128 3.872 8 N -0.672 5.672 9 C 0.127 3.873 10 H 0.042 0.958 11 C 0.030 3.970 12 C -0.527 4.527 13 H 0.052 0.948 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.054 4.054 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.124 4.124 26 S 0.095 5.905 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.360 0.640 37 H 0.024 0.976 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.359 -3.317 11.005 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.303 4.303 4 C -0.166 4.166 5 C -0.157 4.157 6 C -0.275 4.275 7 C -0.003 4.003 8 N -0.307 5.307 9 C 0.017 3.983 10 H 0.060 0.940 11 C -0.008 4.008 12 C -0.565 4.565 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.054 4.054 21 C -0.105 4.105 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.142 4.142 26 S 0.360 5.640 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.182 0.818 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.125 -3.437 10.012 16.862 hybrid contribution -0.137 -0.234 -0.276 0.387 sum -13.262 -3.671 9.736 16.857 Atomic orbital electron populations 1.21783 0.94623 1.01649 1.02386 1.20050 0.95894 0.90104 1.03000 1.24428 1.09172 1.00676 0.96002 1.20008 1.03439 0.94342 0.98838 1.20001 1.02888 0.96840 0.96006 1.24461 1.07041 0.99673 0.96330 1.20406 0.90084 0.90873 0.98895 1.60529 1.07839 1.06483 1.55826 1.20674 0.99660 0.87199 0.90737 0.94021 1.19246 0.89853 0.97483 0.94185 1.21106 0.93976 1.32396 1.09064 0.92948 1.24954 0.95106 0.95952 0.97796 1.69957 0.99415 1.45160 1.38081 0.86650 0.77830 0.80560 0.83342 1.20691 1.21129 1.19767 1.20184 0.96022 0.93760 0.95465 1.21059 0.97189 1.00055 0.92212 1.21125 1.01038 0.93738 0.98938 1.20975 1.01181 0.95815 0.97592 1.20971 1.00822 0.98984 0.93825 1.21045 1.01180 0.93501 0.98517 1.84396 1.64476 1.05684 1.09450 0.92308 0.92411 0.92513 0.90970 0.90298 0.84934 0.84514 0.94705 0.89951 0.81792 0.95754 0.95273 0.92849 0.85358 0.86902 0.87120 0.86950 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.15 0.37 -0.85 16 2 C -0.05 -0.49 6.43 -27.89 -0.18 -0.67 16 3 C -0.19 -2.29 5.76 -36.00 -0.21 -2.50 16 4 C -0.14 -1.68 10.05 -41.21 -0.41 -2.09 16 5 C -0.13 -1.74 10.05 -41.21 -0.41 -2.15 16 6 C -0.16 -2.35 6.02 -36.00 -0.22 -2.57 16 7 C 0.13 2.06 5.97 -4.97 -0.03 2.03 16 8 N -0.67 -12.50 5.53 -109.22 -0.60 -13.10 16 9 C 0.13 2.55 2.19 -68.87 -0.15 2.40 16 10 H 0.04 0.85 7.66 -51.93 -0.40 0.45 16 11 C 0.03 0.74 4.55 -27.88 -0.13 0.61 16 12 C -0.53 -14.09 8.12 -34.44 -0.28 -14.37 16 13 H 0.05 1.36 7.49 -52.49 -0.39 0.97 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.05 -0.98 4.71 -104.63 -0.49 -1.48 16 21 C -0.09 -1.52 9.33 -39.58 -0.37 -1.89 16 22 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 23 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 24 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.12 -2.08 9.67 -39.58 -0.38 -2.46 16 26 S 0.10 1.36 23.31 -107.50 -2.51 -1.15 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.08 1.27 8.00 -51.93 -0.42 0.86 16 36 H 0.36 7.42 7.20 -39.29 -0.28 7.14 16 37 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.32 7.71 -52.48 -0.40 1.91 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.81 8.04 -52.49 -0.42 1.39 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -28.71 381.07 -12.78 -41.49 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.94 Total: 7.53 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -4.19 Total: -31.35 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.13 Total: -38.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.51 Total: -1.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.71 -12.78 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533360607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.910 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds