Wall clock time and date at job start Tue Mar 31 2020 11:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 N 1.46903 * 109.47194 * 120.00513 * 2 1 3 5 5 C 1.46897 * 111.00178 * 148.28183 * 4 2 1 6 6 C 1.50706 * 109.46842 * 287.52608 * 5 4 2 7 7 H 1.07997 * 120.00102 * 4.60592 * 6 5 4 8 8 C 1.37880 * 120.00148 * 184.61488 * 6 5 4 9 9 N 1.31520 * 119.99379 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00324 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47149 * 89.99722 * 10 8 6 12 12 H 1.48497 * 109.47570 * 210.00204 * 10 8 6 13 13 H 1.48503 * 109.47091 * 330.00319 * 10 8 6 14 14 C 1.46894 * 110.99722 * 272.23109 * 4 2 1 15 15 C 1.50701 * 109.47032 * 74.87532 * 14 4 2 16 16 C 1.33052 * 125.03688 * 80.89131 * 15 14 4 17 17 C 1.39368 * 114.91849 * 179.97438 * 16 15 14 18 18 C 1.48373 * 122.77148 * 179.97438 * 17 16 15 19 19 C 1.39357 * 120.11949 * 359.72434 * 18 17 16 20 20 C 1.38013 * 119.87250 * 179.74194 * 19 18 17 21 21 C 1.38326 * 120.12357 * 0.53611 * 20 19 18 22 22 C 1.38330 * 120.24543 * 359.71368 * 21 20 19 23 23 C 1.38008 * 120.12333 * 0.02714 * 22 21 20 24 24 C 1.34571 * 114.46124 * 359.97438 * 17 16 15 25 25 S 1.75814 * 125.03498 * 260.57936 * 15 14 4 26 26 H 1.08999 * 109.47408 * 293.79833 * 1 2 3 27 27 H 1.09001 * 109.47274 * 53.80279 * 1 2 3 28 28 H 1.09008 * 109.47010 * 173.79970 * 1 2 3 29 29 H 1.09002 * 109.47013 * 240.00111 * 2 1 3 30 30 H 1.08998 * 109.47077 * 170.66062 * 3 2 1 31 31 H 1.08995 * 109.46853 * 290.66890 * 3 2 1 32 32 H 1.09004 * 109.46792 * 50.66433 * 3 2 1 33 33 H 1.09007 * 109.47442 * 47.51808 * 5 4 2 34 34 H 1.08997 * 109.47333 * 167.52595 * 5 4 2 35 35 H 0.97006 * 119.99117 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47221 * 194.87533 * 14 4 2 37 37 H 1.09003 * 109.47394 * 314.87838 * 14 4 2 38 38 H 1.08007 * 122.54037 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.06202 * 0.02562 * 19 18 17 40 40 H 1.08004 * 119.93895 * 180.27304 * 20 19 18 41 41 H 1.07997 * 119.87580 * 179.74674 * 21 20 19 42 42 H 1.08003 * 119.93703 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.06199 * 179.97438 * 23 22 21 44 44 H 1.07997 * 125.22850 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.2950 -1.3707 0.9319 6 6 3.0493 -2.5792 0.0656 7 1 2.0586 -2.7779 -0.3156 8 6 4.0893 -3.4313 -0.2401 9 7 5.2958 -3.1891 0.2240 10 14 3.7847 -4.9295 -1.3132 11 1 3.9904 -4.5674 -2.7387 12 1 4.7309 -6.0098 -0.9353 13 1 2.3904 -5.4023 -1.1190 14 6 2.1448 0.2370 2.3298 15 6 0.7752 0.5575 2.8706 16 6 0.0823 -0.2157 3.7027 17 6 -1.1647 0.2866 4.0701 18 6 -2.0812 -0.4326 4.9889 19 6 -1.7123 -1.6670 5.5201 20 6 -2.5665 -2.3290 6.3785 21 6 -3.7916 -1.7747 6.7031 22 6 -4.1651 -0.5521 6.1746 23 6 -3.3165 0.1212 5.3195 24 6 -1.4689 1.4777 3.5227 25 16 -0.1408 2.0121 2.5016 26 1 -0.3634 0.4147 0.9403 27 1 -0.3634 0.6069 -0.8293 28 1 -0.3633 -1.0217 -0.1110 29 1 1.8933 -0.5138 -0.8900 30 1 3.1172 1.4470 0.1668 31 1 1.8191 1.9059 -0.9615 32 1 1.5469 2.0022 0.7949 33 1 3.9697 -0.6862 0.4176 34 1 3.7444 -1.6844 1.8741 35 1 6.0276 -3.7884 0.0086 36 1 2.7465 -0.2230 3.1137 37 1 2.6266 1.1552 1.9936 38 1 0.4579 -1.1610 4.0660 39 1 -0.7578 -2.1026 5.2642 40 1 -2.2797 -3.2837 6.7943 41 1 -4.4586 -2.2981 7.3719 42 1 -5.1226 -0.1237 6.4317 43 1 -3.6094 1.0755 4.9071 44 1 -2.3861 2.0233 3.6884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534337046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:07 Heat of formation + Delta-G solvation = 64.797795 kcal Electronic energy + Delta-G solvation = -23515.319479 eV Core-core repulsion = 20331.273952 eV Total energy + Delta-G solvation = -3184.045527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.60542 -38.29246 -36.81284 -32.89384 -31.99812 -31.06368 -30.80588 -29.37239 -27.11629 -26.51799 -25.03931 -23.65341 -22.34811 -22.01020 -21.00662 -19.06969 -18.93265 -17.32670 -16.55299 -16.18598 -15.47865 -15.32399 -14.84381 -14.61606 -14.32772 -14.19475 -13.61160 -13.45004 -13.25319 -13.06144 -12.63207 -12.53396 -12.48189 -12.20349 -11.98758 -11.74263 -11.55039 -11.53315 -11.07149 -10.94684 -10.86743 -10.78529 -10.71112 -10.47627 -10.34633 -10.09217 -9.75906 -9.30402 -9.12415 -9.01459 -8.45322 -8.37189 -7.66448 -7.25279 -6.02903 -4.03660 0.74547 1.34377 1.57302 1.78326 2.14537 2.97728 3.31897 3.38333 3.43280 3.92892 4.42948 4.69187 4.78809 4.88571 4.95021 5.03854 5.14714 5.28856 5.32974 5.43166 5.47541 5.54512 5.60759 5.70457 5.80288 5.90630 5.92053 5.97847 6.08914 6.16461 6.19491 6.30601 6.33028 6.35709 6.43674 6.45213 6.52505 6.64325 6.76781 6.83824 6.89472 6.92556 7.24401 7.32192 7.82324 8.08366 8.21139 8.52611 9.04168 9.60390 11.07618 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003715 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.317441 B = 7535.789004 C = 8927.640390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.175 4.175 4 N -0.521 5.521 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.107 3.893 15 C -0.134 4.134 16 C -0.122 4.122 17 C -0.058 4.058 18 C -0.016 4.016 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.225 4.225 25 S 0.102 5.898 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.048 0.952 33 H -0.009 1.009 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 9.403 9.972 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 C -0.233 4.233 4 N -0.245 5.245 5 C 0.069 3.931 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.023 4.023 15 C -0.252 4.252 16 C -0.151 4.151 17 C -0.071 4.071 18 C -0.019 4.019 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.361 4.361 25 S 0.368 5.632 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.008 0.992 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.051 10.280 9.176 20.406 hybrid contribution 0.216 -1.490 0.028 1.506 sum -14.835 8.790 9.205 19.547 Atomic orbital electron populations 1.22162 0.95773 1.01491 1.01399 1.21628 0.94885 0.91440 0.94993 1.22480 1.01039 0.98947 1.00882 1.62286 1.32809 1.26317 1.03130 1.19796 0.83591 0.92849 0.96904 1.21144 0.95259 1.07926 1.29781 0.91869 1.24971 0.95068 0.98103 0.96434 1.69959 1.00266 1.38181 1.45539 0.86519 0.78120 0.82438 0.80488 1.20786 1.21294 1.19770 1.20782 0.89176 0.96715 0.95582 1.24449 1.01654 0.96968 1.02085 1.19965 0.93626 1.01252 1.00242 1.17757 0.94966 0.94711 0.99654 1.18524 0.93329 0.94106 0.95909 1.21336 1.00146 0.94265 0.96758 1.21115 0.94315 0.99965 0.98125 1.21169 0.96797 0.96067 1.00481 1.21033 0.99483 0.95502 0.97843 1.21157 0.93611 1.00009 0.98532 1.25671 1.03864 1.01074 1.05480 1.84147 1.10164 1.22353 1.46545 0.91934 0.93876 0.92727 0.89432 0.92565 0.92746 0.93314 0.99158 0.94984 0.92963 0.89621 0.93323 0.83962 0.85372 0.85911 0.86294 0.86178 0.86145 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.27 37.16 0.34 -2.22 16 2 C 0.08 1.51 2.64 -67.71 -0.18 1.33 16 3 C -0.17 -2.85 7.78 37.16 0.29 -2.56 16 4 N -0.52 -10.86 4.28 -229.52 -0.98 -11.84 16 5 C 0.19 4.87 4.66 -4.97 -0.02 4.85 16 6 C -0.50 -13.88 8.38 -34.44 -0.29 -14.17 16 7 H 0.06 1.75 7.76 -52.49 -0.41 1.35 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.11 1.90 5.00 -4.98 -0.02 1.87 16 15 C -0.13 -2.11 4.18 -36.11 -0.15 -2.26 16 16 C -0.12 -1.86 9.39 -40.96 -0.38 -2.25 16 17 C -0.06 -0.80 5.79 -106.60 -0.62 -1.42 16 18 C -0.02 -0.21 5.88 -104.89 -0.62 -0.83 16 19 C -0.11 -1.31 9.50 -39.25 -0.37 -1.68 16 20 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 21 C -0.13 -1.23 10.04 -39.52 -0.40 -1.62 16 22 C -0.12 -1.17 10.03 -39.63 -0.40 -1.57 16 23 C -0.11 -1.26 9.48 -39.25 -0.37 -1.63 16 24 C -0.23 -2.84 10.51 29.44 0.31 -2.53 16 25 S 0.10 1.35 18.73 -107.50 -2.01 -0.66 16 26 H 0.06 1.02 3.50 -40.31 -0.14 0.88 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.09 1.88 7.05 -51.93 -0.37 1.51 16 30 H 0.06 0.97 7.25 -51.93 -0.38 0.59 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.73 4.29 -51.90 -0.22 0.50 16 33 H -0.01 -0.25 7.71 -51.93 -0.40 -0.65 16 34 H 0.03 0.86 7.68 -51.93 -0.40 0.46 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 1.53 7.66 -51.93 -0.40 1.13 16 37 H 0.05 0.82 5.23 -51.93 -0.27 0.55 16 38 H 0.14 2.17 6.71 -52.48 -0.35 1.82 16 39 H 0.13 1.54 6.55 -52.49 -0.34 1.20 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 1.11 6.61 -52.49 -0.35 0.76 16 44 H 0.16 1.59 6.81 -52.49 -0.36 1.23 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -29.61 356.89 -11.33 -40.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.05 Total: 2.10 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -3.38 Total: -26.86 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.25 Total: -37.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.01 Total: -0.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.61 -11.33 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534337046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.744 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds