Wall clock time and date at job start Tue Mar 31 2020 11:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 N 1.46903 * 109.47194 * 120.00513 * 2 1 3 5 5 C 1.46897 * 111.00178 * 148.28183 * 4 2 1 6 6 C 1.50706 * 109.46842 * 287.52608 * 5 4 2 7 7 H 1.07997 * 120.00102 * 4.60592 * 6 5 4 8 8 C 1.37880 * 120.00148 * 184.61488 * 6 5 4 9 9 N 1.31520 * 119.99379 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00324 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47149 * 89.99722 * 10 8 6 12 12 H 1.48497 * 109.47570 * 210.00204 * 10 8 6 13 13 H 1.48503 * 109.47091 * 330.00319 * 10 8 6 14 14 C 1.46894 * 110.99722 * 272.23109 * 4 2 1 15 15 C 1.50701 * 109.47032 * 74.87532 * 14 4 2 16 16 C 1.33052 * 125.03688 * 80.89131 * 15 14 4 17 17 C 1.39368 * 114.91849 * 179.97438 * 16 15 14 18 18 C 1.48373 * 122.77148 * 179.97438 * 17 16 15 19 19 C 1.39357 * 120.11949 * 359.72434 * 18 17 16 20 20 C 1.38013 * 119.87250 * 179.74194 * 19 18 17 21 21 C 1.38326 * 120.12357 * 0.53611 * 20 19 18 22 22 C 1.38330 * 120.24543 * 359.71368 * 21 20 19 23 23 C 1.38008 * 120.12333 * 0.02714 * 22 21 20 24 24 C 1.34571 * 114.46124 * 359.97438 * 17 16 15 25 25 S 1.75814 * 125.03498 * 260.57936 * 15 14 4 26 26 H 1.08999 * 109.47408 * 293.79833 * 1 2 3 27 27 H 1.09001 * 109.47274 * 53.80279 * 1 2 3 28 28 H 1.09008 * 109.47010 * 173.79970 * 1 2 3 29 29 H 1.09002 * 109.47013 * 240.00111 * 2 1 3 30 30 H 1.08998 * 109.47077 * 170.66062 * 3 2 1 31 31 H 1.08995 * 109.46853 * 290.66890 * 3 2 1 32 32 H 1.09004 * 109.46792 * 50.66433 * 3 2 1 33 33 H 1.09007 * 109.47442 * 47.51808 * 5 4 2 34 34 H 1.08997 * 109.47333 * 167.52595 * 5 4 2 35 35 H 0.97006 * 119.99117 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47221 * 194.87533 * 14 4 2 37 37 H 1.09003 * 109.47394 * 314.87838 * 14 4 2 38 38 H 1.08007 * 122.54037 * 359.97438 * 16 15 14 39 39 H 1.07998 * 120.06202 * 0.02562 * 19 18 17 40 40 H 1.08004 * 119.93895 * 180.27304 * 20 19 18 41 41 H 1.07997 * 119.87580 * 179.74674 * 21 20 19 42 42 H 1.08003 * 119.93703 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.06199 * 179.97438 * 23 22 21 44 44 H 1.07997 * 125.22850 * 180.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.2950 -1.3707 0.9319 6 6 3.0493 -2.5792 0.0656 7 1 2.0586 -2.7779 -0.3156 8 6 4.0893 -3.4313 -0.2401 9 7 5.2958 -3.1891 0.2240 10 14 3.7847 -4.9295 -1.3132 11 1 3.9904 -4.5674 -2.7387 12 1 4.7309 -6.0098 -0.9353 13 1 2.3904 -5.4023 -1.1190 14 6 2.1448 0.2370 2.3298 15 6 0.7752 0.5575 2.8706 16 6 0.0823 -0.2157 3.7027 17 6 -1.1647 0.2866 4.0701 18 6 -2.0812 -0.4326 4.9889 19 6 -1.7123 -1.6670 5.5201 20 6 -2.5665 -2.3290 6.3785 21 6 -3.7916 -1.7747 6.7031 22 6 -4.1651 -0.5521 6.1746 23 6 -3.3165 0.1212 5.3195 24 6 -1.4689 1.4777 3.5227 25 16 -0.1408 2.0121 2.5016 26 1 -0.3634 0.4147 0.9403 27 1 -0.3634 0.6069 -0.8293 28 1 -0.3633 -1.0217 -0.1110 29 1 1.8933 -0.5138 -0.8900 30 1 3.1172 1.4470 0.1668 31 1 1.8191 1.9059 -0.9615 32 1 1.5469 2.0022 0.7949 33 1 3.9697 -0.6862 0.4176 34 1 3.7444 -1.6844 1.8741 35 1 6.0276 -3.7884 0.0086 36 1 2.7465 -0.2230 3.1137 37 1 2.6266 1.1552 1.9936 38 1 0.4579 -1.1610 4.0660 39 1 -0.7578 -2.1026 5.2642 40 1 -2.2797 -3.2837 6.7943 41 1 -4.4586 -2.2981 7.3719 42 1 -5.1226 -0.1237 6.4317 43 1 -3.6094 1.0755 4.9071 44 1 -2.3861 2.0233 3.6884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534337046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:06 Heat of formation + Delta-G solvation = 50.233591 kcal Electronic energy + Delta-G solvation = -23515.951031 eV Core-core repulsion = 20331.273952 eV Total energy + Delta-G solvation = -3184.677079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55645 -39.69228 -37.95425 -34.98197 -33.17085 -32.35956 -31.84385 -30.60429 -28.62778 -28.03404 -26.51244 -24.72082 -23.93343 -23.19895 -22.08998 -20.58025 -20.00962 -18.52861 -18.12694 -17.52689 -17.10441 -16.47268 -16.20107 -16.04828 -15.52932 -15.31131 -14.83772 -14.64799 -14.42089 -14.32624 -14.06805 -13.83563 -13.72758 -13.53083 -13.45300 -13.22761 -12.96870 -12.75984 -12.60671 -12.53722 -12.36932 -12.13702 -12.05335 -11.78929 -11.71834 -11.65744 -11.41404 -11.26908 -10.61660 -10.16495 -9.81939 -9.51533 -8.96812 -8.66531 -8.19593 -6.28986 -0.21288 0.53235 0.54201 0.68339 1.03284 1.39543 1.40654 1.52382 1.93409 2.40129 3.06752 3.11665 3.35415 3.69093 3.94959 4.07958 4.10182 4.13248 4.18245 4.25680 4.35332 4.40918 4.51082 4.55503 4.62180 4.63439 4.71559 4.80000 4.83086 4.95949 5.00598 5.07984 5.13810 5.15121 5.20837 5.21989 5.36154 5.39647 5.44062 5.54084 5.63890 5.66036 5.68049 5.81924 6.07769 6.13400 6.41740 6.63064 6.86436 7.40027 8.90500 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003715 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.317441 B = 7535.789004 C = 8927.640390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 C -0.167 4.167 4 N -0.530 5.530 5 C 0.211 3.789 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.111 3.889 15 C -0.163 4.163 16 C -0.124 4.124 17 C -0.071 4.071 18 C -0.039 4.039 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.211 4.211 25 S 0.134 5.866 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.065 0.935 33 H -0.033 1.033 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.140 0.860 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 10.462 10.171 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.225 4.225 4 N -0.254 5.254 5 C 0.085 3.915 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.018 4.018 15 C -0.280 4.280 16 C -0.154 4.154 17 C -0.084 4.084 18 C -0.041 4.041 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.347 4.347 25 S 0.400 5.600 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.083 0.917 33 H -0.016 1.016 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.158 0.842 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -18.196 11.354 9.380 23.409 hybrid contribution 1.115 -1.792 0.059 2.111 sum -17.081 9.563 9.438 21.732 Atomic orbital electron populations 1.22108 0.93890 1.01018 1.03015 1.21648 0.96277 0.92517 0.92825 1.22380 1.00048 0.97313 1.02799 1.62212 1.30106 1.28182 1.04909 1.19397 0.85114 0.92298 0.94704 1.21413 0.95055 1.08897 1.30182 0.92467 1.25836 0.94732 1.01135 0.97696 1.70079 1.01137 1.39434 1.46754 0.85450 0.78125 0.78631 0.78831 1.19794 1.20658 1.19280 1.20683 0.90961 0.96123 0.94070 1.24183 1.01209 0.99179 1.03433 1.20057 0.94562 1.00817 1.00012 1.17823 0.94553 0.95479 1.00517 1.18626 0.94286 0.94520 0.96695 1.21416 1.00382 0.94965 0.98096 1.21359 0.94697 1.00579 0.97809 1.21551 0.96489 0.96197 1.00208 1.21428 1.00340 0.95259 0.96811 1.21425 0.92857 1.00832 0.98634 1.26047 1.04365 1.00378 1.03881 1.83906 1.09558 1.20107 1.46399 0.90998 0.91224 0.94543 0.92508 0.94109 0.90492 0.91677 1.01578 0.97728 0.92725 0.91014 0.92518 0.85382 0.86663 0.84556 0.83627 0.83218 0.84193 0.79139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.27 71.98 0.67 -4.08 16 2 C 0.08 2.93 2.64 44.91 0.12 3.05 16 3 C -0.17 -5.36 7.78 71.98 0.56 -4.80 16 4 N -0.53 -23.14 4.28 -880.05 -3.76 -26.90 16 5 C 0.21 11.29 4.66 85.56 0.40 11.69 16 6 C -0.52 -29.74 8.38 25.60 0.21 -29.52 16 7 H 0.06 3.29 7.76 -2.91 -0.02 3.26 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 10 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 C 0.11 4.10 5.00 85.56 0.43 4.53 16 15 C -0.16 -5.15 4.18 24.53 0.10 -5.05 16 16 C -0.12 -3.90 9.39 21.38 0.20 -3.70 16 17 C -0.07 -1.91 5.79 -21.15 -0.12 -2.03 16 18 C -0.04 -0.96 5.88 -20.04 -0.12 -1.08 16 19 C -0.13 -3.24 9.50 22.49 0.21 -3.03 16 20 C -0.13 -2.57 10.03 22.24 0.22 -2.35 16 21 C -0.13 -2.11 10.04 22.31 0.22 -1.89 16 22 C -0.12 -1.95 10.03 22.24 0.22 -1.73 16 23 C -0.12 -2.30 9.48 22.48 0.21 -2.09 16 24 C -0.21 -4.76 10.51 66.98 0.70 -4.06 16 25 S 0.13 3.29 18.73 -56.49 -1.06 2.23 16 26 H 0.07 2.26 3.50 -9.78 -0.03 2.23 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 29 H 0.06 2.53 7.05 -2.39 -0.02 2.51 16 30 H 0.04 1.42 7.25 -2.39 -0.02 1.41 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 1.85 4.29 -2.40 -0.01 1.84 16 33 H -0.03 -1.91 7.71 -2.38 -0.02 -1.93 16 34 H 0.00 0.27 7.68 -2.39 -0.02 0.25 16 35 H 0.26 15.02 8.31 -92.70 -0.77 14.24 16 36 H 0.07 2.77 7.66 -2.39 -0.02 2.75 16 37 H 0.06 1.98 5.23 -2.39 -0.01 1.96 16 38 H 0.13 4.25 6.71 -2.91 -0.02 4.23 16 39 H 0.12 3.02 6.55 -2.91 -0.02 3.00 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.14 2.04 6.61 -2.91 -0.02 2.02 16 44 H 0.19 3.00 6.81 -2.91 -0.02 2.98 16 Total: -1.00 -66.13 356.89 3.18 -62.95 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.98 Total: 16.24 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 4.71 Total: -45.43 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.48 Total: -83.05 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.06 Total: 2.23 kcal Total: -66.13 3.18 -62.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534337046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.185 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds