Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39730 * 125.77982 * 2 1 4 4 C 1.36142 * 107.86308 * 180.12932 * 3 2 1 5 5 N 1.39378 * 126.26471 * 179.84811 * 4 3 2 6 6 C 1.34774 * 120.00049 * 359.68446 * 5 4 3 7 7 O 1.21568 * 120.00100 * 0.02562 * 6 5 4 8 8 C 1.47790 * 120.00068 * 179.72607 * 6 5 4 9 9 C 1.39993 * 120.94075 * 354.19493 * 8 6 5 10 10 N 1.32134 * 118.91976 * 179.71513 * 9 8 6 11 11 C 1.31887 * 120.96379 * 0.57579 * 10 9 8 12 12 C 1.50706 * 118.94756 * 179.72189 * 11 10 9 13 13 N 1.31853 * 122.10696 * 359.69776 * 11 10 9 14 14 C 1.32160 * 120.96502 * 0.02562 * 13 11 10 15 15 C 1.50700 * 120.53541 * 180.02562 * 14 13 11 16 16 N 1.35811 * 107.46997 * 359.58700 * 4 3 2 17 17 C 1.46501 * 126.09277 * 180.22745 * 16 4 3 18 18 C 1.50705 * 109.47197 * 89.99837 * 17 16 4 19 19 H 1.07997 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31503 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99373 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47105 * 89.99935 * 22 20 18 24 24 H 1.48502 * 109.47097 * 209.99915 * 22 20 18 25 25 H 1.48500 * 109.47435 * 329.99537 * 22 20 18 26 26 N 1.30839 * 125.77870 * 179.66102 * 2 1 3 27 27 H 1.09000 * 109.47115 * 270.31726 * 1 2 3 28 28 H 1.08997 * 109.47046 * 30.31898 * 1 2 3 29 29 H 1.09004 * 109.46778 * 150.32221 * 1 2 3 30 30 H 1.08005 * 126.06734 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00036 * 179.69618 * 5 4 3 32 32 H 1.07998 * 120.53967 * 0.02562 * 9 8 6 33 33 H 1.08994 * 109.46982 * 269.98158 * 12 11 10 34 34 H 1.09002 * 109.46933 * 29.97495 * 12 11 10 35 35 H 1.08995 * 109.47165 * 149.97164 * 12 11 10 36 36 H 1.09001 * 109.47552 * 263.65572 * 15 14 13 37 37 H 1.08996 * 109.47423 * 23.65238 * 15 14 13 38 38 H 1.09004 * 109.47232 * 143.65371 * 15 14 13 39 39 H 1.08998 * 109.47229 * 209.99832 * 17 16 4 40 40 H 1.08999 * 109.47403 * 329.99850 * 17 16 4 41 41 H 0.97003 * 120.00308 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7148 -0.0029 5 7 4.7495 1.5304 -0.0069 6 6 4.6129 2.8712 -0.0146 7 8 3.5039 3.3692 -0.0176 8 6 5.8113 3.7362 -0.0127 9 6 7.0933 3.1894 0.1185 10 7 8.1374 3.9993 0.1094 11 6 7.9832 5.3038 -0.0093 12 6 9.2052 6.1858 -0.0079 13 7 6.7942 5.8609 -0.1295 14 6 5.6962 5.1254 -0.1355 15 6 4.3422 5.7723 -0.2741 16 7 3.6088 -0.6433 0.0046 17 6 4.7859 -1.5155 0.0094 18 6 5.1897 -1.8066 1.4319 19 1 4.6261 -1.3839 2.2504 20 6 6.2792 -2.6118 1.6881 21 7 6.9656 -3.1262 0.6914 22 14 6.7800 -2.9721 3.4513 23 1 6.0795 -4.1927 3.9253 24 1 8.2479 -3.1876 3.5147 25 1 6.4108 -1.8223 4.3156 26 7 2.2720 -1.0615 0.0063 27 1 -0.3633 0.0057 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3633 -0.8929 -0.5088 30 1 1.9875 2.1599 0.0004 31 1 5.6344 1.1331 -0.0043 32 1 7.2272 2.1226 0.2203 33 1 9.4367 6.4842 1.0145 34 1 10.0494 5.6376 -0.4263 35 1 9.0135 7.0732 -0.6110 36 1 3.9033 5.9120 0.7138 37 1 4.4502 6.7402 -0.7637 38 1 3.6935 5.1328 -0.8728 39 1 4.5479 -2.4497 -0.4992 40 1 5.6076 -1.0197 -0.5073 41 1 7.7324 -3.6924 0.8717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539684987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = 88.490117 kcal Electronic energy + Delta-G solvation = -25683.901991 eV Core-core repulsion = 21986.883377 eV Total energy + Delta-G solvation = -3697.018614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64534 -40.73845 -39.10840 -35.28264 -34.44848 -33.87146 -33.64370 -32.11248 -29.68119 -29.30028 -28.94170 -27.74800 -26.07385 -24.29333 -23.20232 -22.70785 -21.62622 -19.91749 -19.59160 -18.00196 -17.45415 -16.83731 -16.35928 -16.03156 -15.91698 -15.30929 -15.03341 -14.64622 -14.19866 -14.10497 -13.83460 -13.39438 -13.25832 -12.96893 -12.81478 -12.66838 -12.61121 -12.57091 -12.30395 -12.10569 -11.91073 -11.73541 -11.59849 -11.12028 -10.92692 -10.78751 -10.49591 -10.38113 -9.94360 -9.86115 -9.69305 -9.59805 -9.46324 -8.76304 -7.98056 -7.53489 -6.37687 -4.46696 0.17906 0.79978 2.27311 2.61508 3.00683 3.14547 3.21699 3.25319 3.42934 3.57222 3.62333 3.67260 3.77801 4.12663 4.20812 4.43990 4.64622 4.86079 4.95727 5.14856 5.24100 5.29692 5.37671 5.52866 5.53421 5.56970 5.67657 5.90951 5.99888 6.07976 6.09540 6.18221 6.19588 6.34304 6.57653 6.68079 6.77075 6.98248 7.39527 7.48270 7.55708 7.74049 7.77341 7.79591 8.12621 8.55100 8.64914 9.21492 10.69358 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004740 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.882838 B = 5906.134683 C = 8321.486802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.298 3.702 5 N -0.632 5.632 6 C 0.577 3.423 7 O -0.502 6.502 8 C -0.251 4.251 9 C 0.196 3.804 10 N -0.524 5.524 11 C 0.340 3.660 12 C -0.088 4.088 13 N -0.526 5.526 14 C 0.243 3.757 15 C -0.113 4.113 16 N -0.344 5.344 17 C 0.256 3.744 18 C -0.543 4.543 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.281 5.281 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.163 0.837 31 H 0.414 0.586 32 H 0.177 0.823 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 16.465 -2.887 16.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.321 4.321 4 C 0.076 3.924 5 N -0.278 5.278 6 C 0.364 3.636 7 O -0.377 6.377 8 C -0.258 4.258 9 C 0.029 3.971 10 N -0.238 5.238 11 C 0.074 3.926 12 C -0.147 4.147 13 N -0.242 5.242 14 C 0.097 3.903 15 C -0.170 4.170 16 N -0.130 5.130 17 C 0.139 3.861 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.197 1.197 26 N -0.106 5.106 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.252 0.748 32 H 0.193 0.807 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.276 15.955 -2.945 16.226 hybrid contribution 0.433 -0.503 1.054 1.246 sum 0.709 15.451 -1.890 15.583 Atomic orbital electron populations 1.20027 0.87517 1.02383 1.02200 1.22028 0.96566 0.90970 1.01920 1.21267 0.88932 1.00513 1.21351 1.17952 0.87670 0.83331 1.03403 1.42538 1.08546 1.05248 1.71496 1.17522 0.88378 0.80773 0.76963 1.90676 1.25713 1.73262 1.48026 1.21374 0.95489 0.96342 1.12640 1.23635 0.86673 1.00846 0.85979 1.68347 1.34252 1.05115 1.16133 1.23576 0.93266 0.88688 0.87021 1.20652 0.91898 0.97879 1.04228 1.68286 0.98430 1.40471 1.16986 1.21978 0.95714 0.88424 0.84234 1.21125 0.89904 1.01238 1.04692 1.49528 1.06530 1.01980 1.54989 1.19639 0.77770 0.89771 0.98961 1.21338 1.13420 1.32092 0.91281 0.91666 1.24925 0.95647 0.94807 0.98191 1.69906 1.19159 1.32367 1.31172 0.86367 0.77705 0.79123 0.83611 1.20151 1.20775 1.19698 1.77357 0.86114 1.21820 1.25316 0.91280 0.91097 0.91525 0.81969 0.74821 0.80657 0.89145 0.89181 0.89319 0.88904 0.90534 0.87301 0.92428 0.93895 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.05 0.97 7.20 -82.46 -0.59 0.38 16 3 C -0.29 -5.63 9.58 -39.78 -0.38 -6.01 16 4 C 0.30 6.06 7.68 -152.74 -1.17 4.89 16 5 N -0.63 -10.69 5.37 -12.22 -0.07 -10.76 16 6 C 0.58 8.91 7.69 -12.36 -0.10 8.81 16 7 O -0.50 -8.25 10.65 5.31 0.06 -8.19 16 8 C -0.25 -3.38 5.91 -104.69 -0.62 -4.00 16 9 C 0.20 2.53 10.80 -16.76 -0.18 2.35 16 10 N -0.52 -6.87 10.32 -10.38 -0.11 -6.97 16 11 C 0.34 4.06 7.64 -157.06 -1.20 2.86 16 12 C -0.09 -0.69 10.31 36.01 0.37 -0.32 16 13 N -0.53 -6.64 10.26 -6.67 -0.07 -6.70 16 14 C 0.24 3.12 6.87 -81.81 -0.56 2.56 16 15 C -0.11 -1.23 9.00 36.01 0.32 -0.90 16 16 N -0.34 -7.86 3.62 -61.45 -0.22 -8.08 16 17 C 0.26 6.25 6.02 -5.19 -0.03 6.22 16 18 C -0.54 -14.29 9.39 -34.44 -0.32 -14.61 16 19 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 22 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 N -0.28 -6.37 12.56 33.64 0.42 -5.95 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.16 2.99 5.83 -52.48 -0.31 2.69 16 31 H 0.41 6.48 6.16 -40.82 -0.25 6.22 16 32 H 0.18 2.00 6.58 -52.49 -0.35 1.65 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.28 5.95 -51.93 -0.31 0.98 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.04 1.01 7.52 -51.93 -0.39 0.61 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.10 352.34 -8.10 -39.20 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.95 Total: 6.47 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -4.18 Total: 3.39 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.70 Total: -61.61 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.06 Total: -8.19 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.10 -8.10 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539684987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.688 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds