Wall clock time and date at job start Tue Mar 31 2020 10:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39730 * 125.77982 * 2 1 4 4 C 1.36142 * 107.86308 * 180.12932 * 3 2 1 5 5 N 1.39378 * 126.26471 * 179.84811 * 4 3 2 6 6 C 1.34774 * 120.00049 * 359.68446 * 5 4 3 7 7 O 1.21568 * 120.00100 * 0.02562 * 6 5 4 8 8 C 1.47790 * 120.00068 * 179.72607 * 6 5 4 9 9 C 1.39993 * 120.94075 * 354.19493 * 8 6 5 10 10 N 1.32134 * 118.91976 * 179.71513 * 9 8 6 11 11 C 1.31887 * 120.96379 * 0.57579 * 10 9 8 12 12 C 1.50706 * 118.94756 * 179.72189 * 11 10 9 13 13 N 1.31853 * 122.10696 * 359.69776 * 11 10 9 14 14 C 1.32160 * 120.96502 * 0.02562 * 13 11 10 15 15 C 1.50700 * 120.53541 * 180.02562 * 14 13 11 16 16 N 1.35811 * 107.46997 * 359.58700 * 4 3 2 17 17 C 1.46501 * 126.09277 * 180.22745 * 16 4 3 18 18 C 1.50705 * 109.47197 * 89.99837 * 17 16 4 19 19 H 1.07997 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31503 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99373 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47105 * 89.99935 * 22 20 18 24 24 H 1.48502 * 109.47097 * 209.99915 * 22 20 18 25 25 H 1.48500 * 109.47435 * 329.99537 * 22 20 18 26 26 N 1.30839 * 125.77870 * 179.66102 * 2 1 3 27 27 H 1.09000 * 109.47115 * 270.31726 * 1 2 3 28 28 H 1.08997 * 109.47046 * 30.31898 * 1 2 3 29 29 H 1.09004 * 109.46778 * 150.32221 * 1 2 3 30 30 H 1.08005 * 126.06734 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00036 * 179.69618 * 5 4 3 32 32 H 1.07998 * 120.53967 * 0.02562 * 9 8 6 33 33 H 1.08994 * 109.46982 * 269.98158 * 12 11 10 34 34 H 1.09002 * 109.46933 * 29.97495 * 12 11 10 35 35 H 1.08995 * 109.47165 * 149.97164 * 12 11 10 36 36 H 1.09001 * 109.47552 * 263.65572 * 15 14 13 37 37 H 1.08996 * 109.47423 * 23.65238 * 15 14 13 38 38 H 1.09004 * 109.47232 * 143.65371 * 15 14 13 39 39 H 1.08998 * 109.47229 * 209.99832 * 17 16 4 40 40 H 1.08999 * 109.47403 * 329.99850 * 17 16 4 41 41 H 0.97003 * 120.00308 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7148 -0.0029 5 7 4.7495 1.5304 -0.0069 6 6 4.6129 2.8712 -0.0146 7 8 3.5039 3.3692 -0.0176 8 6 5.8113 3.7362 -0.0127 9 6 7.0933 3.1894 0.1185 10 7 8.1374 3.9993 0.1094 11 6 7.9832 5.3038 -0.0093 12 6 9.2052 6.1858 -0.0079 13 7 6.7942 5.8609 -0.1295 14 6 5.6962 5.1254 -0.1355 15 6 4.3422 5.7723 -0.2741 16 7 3.6088 -0.6433 0.0046 17 6 4.7859 -1.5155 0.0094 18 6 5.1897 -1.8066 1.4319 19 1 4.6261 -1.3839 2.2504 20 6 6.2792 -2.6118 1.6881 21 7 6.9656 -3.1262 0.6914 22 14 6.7800 -2.9721 3.4513 23 1 6.0795 -4.1927 3.9253 24 1 8.2479 -3.1876 3.5147 25 1 6.4108 -1.8223 4.3156 26 7 2.2720 -1.0615 0.0063 27 1 -0.3633 0.0057 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3633 -0.8929 -0.5088 30 1 1.9875 2.1599 0.0004 31 1 5.6344 1.1331 -0.0043 32 1 7.2272 2.1226 0.2203 33 1 9.4367 6.4842 1.0145 34 1 10.0494 5.6376 -0.4263 35 1 9.0135 7.0732 -0.6110 36 1 3.9033 5.9120 0.7138 37 1 4.4502 6.7402 -0.7637 38 1 3.6935 5.1328 -0.8728 39 1 4.5479 -2.4497 -0.4992 40 1 5.6076 -1.0197 -0.5073 41 1 7.7324 -3.6924 0.8717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539684987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:06 Heat of formation + Delta-G solvation = 69.697267 kcal Electronic energy + Delta-G solvation = -25684.716910 eV Core-core repulsion = 21986.883377 eV Total energy + Delta-G solvation = -3697.833534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.77357 -42.13586 -40.41843 -36.56954 -35.82955 -35.37513 -34.67449 -33.82078 -30.98071 -30.39009 -30.14137 -29.03322 -27.79777 -25.31403 -24.80611 -23.97832 -22.82267 -21.36500 -21.00619 -19.08120 -18.93951 -18.70536 -17.78113 -17.05632 -16.99982 -16.78494 -16.41100 -16.21452 -15.68283 -15.51960 -14.82243 -14.54303 -14.42640 -14.24078 -14.15178 -14.05029 -13.58898 -13.43207 -13.35473 -13.32265 -13.17251 -13.10604 -12.89978 -12.78094 -12.72339 -12.30695 -12.00216 -11.73957 -11.68941 -11.42722 -10.87524 -10.77716 -10.67617 -10.50263 -9.64215 -9.09708 -8.37666 -6.55030 -0.83980 -0.19304 0.84618 1.20980 1.35171 1.37631 1.47400 1.63952 2.02904 2.09434 2.32738 2.52335 2.72538 2.81867 2.93057 3.14260 3.30172 3.60570 3.82663 3.99321 4.21036 4.29882 4.56177 4.65077 4.67372 4.69663 4.70326 4.76511 4.82299 4.84286 4.87182 4.92245 4.96940 5.18387 5.21229 5.24092 5.33633 5.50062 5.70397 5.75586 5.95637 6.04841 6.19696 6.54452 6.77091 6.82308 7.00190 7.17233 8.68657 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.004740 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.882838 B = 5906.134683 C = 8321.486802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.297 4.297 4 C 0.297 3.703 5 N -0.633 5.633 6 C 0.583 3.417 7 O -0.510 6.510 8 C -0.262 4.262 9 C 0.196 3.804 10 N -0.539 5.539 11 C 0.336 3.664 12 C -0.087 4.087 13 N -0.532 5.532 14 C 0.242 3.758 15 C -0.108 4.108 16 N -0.368 5.368 17 C 0.272 3.728 18 C -0.556 4.556 19 H 0.048 0.952 20 C 0.030 3.970 21 N -0.912 5.912 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.272 1.272 26 N -0.328 5.328 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.176 0.824 31 H 0.418 0.582 32 H 0.184 0.816 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.028 0.972 40 H 0.048 0.952 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 18.259 -2.253 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.328 4.328 4 C 0.075 3.925 5 N -0.280 5.280 6 C 0.371 3.629 7 O -0.386 6.386 8 C -0.270 4.270 9 C 0.029 3.971 10 N -0.254 5.254 11 C 0.072 3.928 12 C -0.145 4.145 13 N -0.248 5.248 14 C 0.095 3.905 15 C -0.165 4.165 16 N -0.154 5.154 17 C 0.153 3.847 18 C -0.594 4.594 19 H 0.066 0.934 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.790 3.210 23 H -0.202 1.202 24 H -0.194 1.194 25 H -0.197 1.197 26 N -0.153 5.153 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.193 0.807 31 H 0.256 0.744 32 H 0.201 0.799 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.540 17.777 -2.321 17.936 hybrid contribution 0.339 -0.947 0.818 1.296 sum 0.879 16.830 -1.503 16.920 Atomic orbital electron populations 1.20236 0.83859 1.04124 1.03727 1.22891 0.98762 0.90022 0.99036 1.21521 0.88662 1.01077 1.21556 1.18319 0.89122 0.82743 1.02345 1.42647 1.07923 1.05556 1.71885 1.17782 0.88950 0.80176 0.76020 1.90654 1.26354 1.73241 1.48365 1.21181 0.94716 0.96404 1.14694 1.23807 0.86618 1.01407 0.85259 1.68447 1.34140 1.05777 1.17016 1.24404 0.94336 0.88826 0.85261 1.20835 0.90343 0.97753 1.05549 1.68414 0.98549 1.40235 1.17569 1.22308 0.96672 0.88217 0.83319 1.21120 0.88687 1.01725 1.04932 1.49319 1.06293 1.02692 1.57104 1.19228 0.78656 0.89046 0.97774 1.21408 1.13715 1.32661 0.91641 0.93375 1.25630 0.95395 0.94312 1.01831 1.69976 1.19498 1.32623 1.32904 0.85442 0.77888 0.78634 0.79066 1.20167 1.19411 1.19655 1.77311 0.86368 1.23723 1.27856 0.89703 0.88356 0.90780 0.80738 0.74380 0.79923 0.87560 0.88241 0.87824 0.88380 0.88735 0.88248 0.95394 0.93450 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.23 7.20 43.07 0.31 2.54 16 3 C -0.30 -11.44 9.58 22.14 0.21 -11.23 16 4 C 0.30 12.20 7.68 131.18 1.01 13.21 16 5 N -0.63 -21.65 5.37 -310.84 -1.67 -23.31 16 6 C 0.58 17.82 7.69 86.77 0.67 18.48 16 7 O -0.51 -16.43 10.65 -3.93 -0.04 -16.47 16 8 C -0.26 -6.92 5.91 -19.91 -0.12 -7.03 16 9 C 0.20 4.97 10.80 85.07 0.92 5.89 16 10 N -0.54 -13.52 10.32 -186.76 -1.93 -15.44 16 11 C 0.34 7.46 7.64 138.71 1.06 8.52 16 12 C -0.09 -1.15 10.31 71.24 0.73 -0.41 16 13 N -0.53 -12.50 10.26 -175.01 -1.79 -14.30 16 14 C 0.24 5.90 6.87 42.92 0.29 6.19 16 15 C -0.11 -2.19 9.00 71.24 0.64 -1.54 16 16 N -0.37 -17.29 3.62 -348.32 -1.26 -18.55 16 17 C 0.27 13.77 6.02 85.63 0.52 14.29 16 18 C -0.56 -29.97 9.39 25.60 0.24 -29.73 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 20 C 0.03 1.59 5.46 84.66 0.46 2.06 16 21 N -0.91 -49.41 13.29 21.45 0.28 -49.12 16 22 Si 0.97 41.85 29.54 68.60 2.03 43.87 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 N -0.33 -15.17 12.56 -47.47 -0.60 -15.76 16 27 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.18 6.24 5.83 -2.91 -0.02 6.23 16 31 H 0.42 13.38 6.16 -92.71 -0.57 12.80 16 32 H 0.18 4.18 6.58 -2.91 -0.02 4.16 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.24 5.95 -2.38 -0.01 2.22 16 39 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 2.31 7.52 -2.39 -0.02 2.29 16 41 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -66.85 352.34 3.22 -63.62 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.51 Total: 25.11 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 7.69 Total: 20.36 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -6.96 Total: -136.49 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.04 Total: -16.47 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -66.85 3.22 -63.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539684987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.322 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds