Wall clock time and date at job start Tue Mar 31 2020 10:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46903 * 2 1 4 4 C 1.38521 * 120.01737 * 125.28502 * 3 2 1 5 5 C 1.40009 * 117.82615 * 180.25613 * 4 3 2 6 6 C 1.48352 * 121.13874 * 179.73621 * 5 4 3 7 7 O 1.21838 * 119.99916 * 173.91959 * 6 5 4 8 8 N 1.33609 * 120.00290 * 353.92635 * 6 5 4 9 9 C 1.33104 * 120.00382 * 179.97438 * 8 6 5 10 10 C 1.41060 * 126.36784 * 359.95626 * 9 8 6 11 11 C 1.35092 * 108.24077 * 180.02562 * 10 9 8 12 12 N 1.36361 * 108.91920 * 359.72128 * 11 10 9 13 13 C 1.46504 * 125.85672 * 180.27486 * 12 11 10 14 14 C 1.50700 * 109.46950 * 275.19684 * 13 12 11 15 15 H 1.08008 * 119.99969 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46949 * 89.99787 * 18 16 14 20 20 H 1.48499 * 109.47233 * 209.99818 * 18 16 14 21 21 H 1.48503 * 109.47177 * 330.00177 * 18 16 14 22 22 N 1.37377 * 126.36954 * 179.97438 * 9 8 6 23 23 H 0.96995 * 126.35223 * 359.96508 * 22 9 8 24 24 C 1.39713 * 117.72258 * 359.47133 * 5 4 3 25 25 C 1.50705 * 120.17260 * 180.29029 * 24 5 4 26 26 N 1.31878 * 119.66187 * 0.27259 * 24 5 4 27 27 N 1.28282 * 122.32569 * 359.97438 * 26 24 5 28 28 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47119 * 299.99684 * 1 2 3 30 30 H 1.09003 * 109.47496 * 60.00231 * 1 2 3 31 31 H 1.08999 * 109.47119 * 240.00316 * 2 1 3 32 32 H 1.09003 * 109.47496 * 119.99769 * 2 1 3 33 33 H 1.08006 * 121.09073 * 0.02562 * 4 3 2 34 34 H 1.08010 * 125.88028 * 359.97438 * 10 9 8 35 35 H 1.08000 * 125.54543 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47273 * 35.19882 * 13 12 11 37 37 H 1.08999 * 109.47346 * 155.20105 * 13 12 11 38 38 H 0.97001 * 120.00433 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46919 * 83.65639 * 25 24 5 40 40 H 1.08993 * 109.47399 * 203.66337 * 25 24 5 41 41 H 1.08999 * 109.46838 * 323.66568 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9164 1.8433 0.9791 5 6 3.3493 3.1742 0.9386 6 6 4.2913 3.7057 1.9540 7 8 4.7409 4.8321 1.8373 8 7 4.6466 2.9493 2.9964 9 6 5.4922 3.4260 3.9072 10 6 6.0919 4.7028 3.9045 11 6 6.8826 4.8008 4.9955 12 7 6.8079 3.6367 5.7017 13 6 7.5135 3.3447 6.9520 14 6 8.9006 2.8445 6.6410 15 1 9.2244 2.7537 5.6146 16 6 9.7563 2.5029 7.6666 17 7 9.3619 2.6131 8.9163 18 14 11.4760 1.8836 7.2811 19 1 12.4131 3.0338 7.2150 20 1 11.9156 0.9476 8.3469 21 1 11.4665 1.1772 5.9749 22 7 5.9433 2.7660 5.0244 23 1 5.7043 1.8661 5.2962 24 6 2.8683 3.9829 -0.0941 25 6 3.3034 5.4223 -0.1943 26 7 2.0317 3.4803 -0.9811 27 7 1.6349 2.2612 -0.9358 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2578 1.1691 1.7507 34 1 5.9450 5.4696 3.1582 35 1 7.4737 5.6629 5.2671 36 1 7.5804 4.2523 7.5519 37 1 6.9681 2.5816 7.5073 38 1 9.9641 2.3731 9.6380 39 1 4.2612 5.4772 -0.7117 40 1 2.5570 5.9897 -0.7501 41 1 3.4068 5.8411 0.8068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544759082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:36 Heat of formation + Delta-G solvation = 113.602803 kcal Electronic energy + Delta-G solvation = -24813.977142 eV Core-core repulsion = 21118.047495 eV Total energy + Delta-G solvation = -3695.929647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20396 -40.93931 -38.58484 -35.24683 -34.45428 -33.28476 -33.17166 -31.66231 -31.26644 -30.68129 -27.85084 -26.97370 -25.66341 -23.66110 -23.24559 -22.59857 -21.57742 -21.39048 -19.46706 -17.51537 -17.21654 -16.88125 -16.13702 -15.57677 -15.43944 -15.26502 -15.10377 -14.91282 -14.46639 -14.34316 -14.24982 -13.65439 -13.31947 -13.10741 -12.95514 -12.86108 -12.63189 -12.30063 -12.15261 -11.97332 -11.90091 -11.47538 -11.32113 -11.15091 -10.71602 -10.63985 -10.58042 -10.00117 -9.93199 -9.74722 -9.46266 -9.35466 -9.25117 -9.02594 -8.51751 -7.20173 -6.62279 -4.77664 0.52199 0.98851 1.55890 1.84409 2.81261 2.98523 3.07190 3.10532 3.53048 3.86881 3.98625 4.00924 4.34181 4.38387 4.45756 4.68981 4.71062 4.86886 4.99055 5.05910 5.11853 5.22030 5.49656 5.57297 5.68229 5.70662 5.75556 5.78878 5.85882 5.95082 5.98214 6.09379 6.23308 6.32209 6.35405 6.40367 6.50401 6.56679 7.21872 7.27510 7.37367 7.39835 7.71085 8.00020 8.30547 8.80243 8.93852 9.02069 10.41638 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.002576 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.292328 B =10865.077274 C =11638.675202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C 0.046 3.954 4 C -0.061 4.061 5 C -0.094 4.094 6 C 0.536 3.464 7 O -0.565 6.565 8 N -0.693 5.693 9 C 0.469 3.531 10 C -0.331 4.331 11 C 0.166 3.834 12 N -0.334 5.334 13 C 0.252 3.748 14 C -0.562 4.562 15 H 0.070 0.930 16 C 0.071 3.929 17 N -0.885 5.885 18 Si 0.911 3.089 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.271 1.271 22 N -0.462 5.462 23 H 0.447 0.553 24 C 0.104 3.896 25 C -0.100 4.100 26 N -0.254 5.254 27 N -0.234 5.234 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.191 0.809 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.273 0.727 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 -0.935 -8.344 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.090 4.090 5 C -0.108 4.108 6 C 0.321 3.679 7 O -0.447 6.447 8 N -0.457 5.457 9 C 0.220 3.780 10 C -0.362 4.362 11 C 0.019 3.981 12 N -0.118 5.118 13 C 0.136 3.864 14 C -0.600 4.600 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.521 5.521 18 Si 0.737 3.263 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.195 1.195 22 N -0.183 5.183 23 H 0.294 0.706 24 C -0.041 4.041 25 C -0.158 4.158 26 N -0.096 5.096 27 N -0.077 5.077 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.179 0.821 34 H 0.203 0.797 35 H 0.208 0.792 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.386 -1.080 -9.182 13.905 hybrid contribution 2.058 -0.604 1.379 2.550 sum -8.328 -1.684 -7.803 11.535 Atomic orbital electron populations 1.21699 0.93987 1.01859 1.02765 1.20401 0.97054 0.89372 1.03571 1.22841 0.95587 0.98495 0.92946 1.22651 0.93009 0.95843 0.97507 1.20970 0.98655 0.94513 0.96618 1.18409 0.81269 0.84278 0.83981 1.90577 1.54348 1.21699 1.78068 1.68641 1.28709 1.38879 1.09500 1.19050 0.87252 0.87661 0.84011 1.22474 1.08673 1.00780 1.04314 1.22945 0.95365 0.88838 0.90918 1.48196 1.34906 1.07346 1.21370 1.20161 0.91247 0.99956 0.75050 1.21374 0.96969 1.47331 0.94298 0.91159 1.24953 0.99536 0.94403 0.94528 1.69885 1.37236 1.46122 0.98885 0.86273 0.82540 0.79021 0.78487 1.19945 1.20656 1.19512 1.44623 1.39253 1.14054 1.20349 0.70568 1.23127 0.92101 0.98824 0.90012 1.20910 1.01182 0.88227 1.05440 1.72970 1.09796 1.05501 1.21360 1.72655 1.17861 0.97663 1.19483 0.92114 0.92822 0.91521 0.89733 0.89881 0.82112 0.79702 0.79178 0.91105 0.92863 0.91701 0.89922 0.91394 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.78 37.15 0.36 -0.92 16 2 C -0.06 -0.62 6.35 -27.88 -0.18 -0.79 16 3 C 0.05 0.61 6.25 -82.45 -0.52 0.10 16 4 C -0.06 -0.86 9.37 -38.81 -0.36 -1.22 16 5 C -0.09 -1.52 5.92 -104.52 -0.62 -2.14 16 6 C 0.54 9.62 7.65 -12.62 -0.10 9.52 16 7 O -0.57 -10.54 10.45 5.07 0.05 -10.48 16 8 N -0.69 -12.28 9.84 -12.14 -0.12 -12.40 16 9 C 0.47 8.14 8.07 -155.24 -1.25 6.89 16 10 C -0.33 -5.45 9.52 -39.63 -0.38 -5.83 16 11 C 0.17 2.49 11.46 -16.66 -0.19 2.30 16 12 N -0.33 -5.60 3.63 -62.23 -0.23 -5.83 16 13 C 0.25 4.86 6.19 -5.19 -0.03 4.83 16 14 C -0.56 -12.62 9.39 -34.44 -0.32 -12.94 16 15 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 16 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -21.58 13.29 55.43 0.74 -20.84 16 18 Si 0.91 18.51 29.54 -169.99 -5.02 13.49 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 N -0.46 -7.37 7.38 31.32 0.23 -7.14 16 23 H 0.45 6.20 8.96 -182.56 -1.64 4.56 16 24 C 0.10 1.65 6.90 -82.02 -0.57 1.09 16 25 C -0.10 -1.38 8.98 36.01 0.32 -1.06 16 26 N -0.25 -4.16 11.42 33.80 0.39 -3.78 16 27 N -0.23 -3.61 11.04 33.57 0.37 -3.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.66 7.96 -51.93 -0.41 0.24 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.65 7.92 -51.93 -0.41 0.23 16 33 H 0.16 2.04 7.67 -52.48 -0.40 1.63 16 34 H 0.19 3.14 5.77 -52.48 -0.30 2.84 16 35 H 0.19 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 1.56 5.92 -51.93 -0.31 1.25 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -27.70 354.55 -8.57 -36.27 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.40 Total: 7.22 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -3.93 Total: 1.39 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 1.38 Total: -53.23 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.05 Total: -10.48 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.70 -8.57 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544759082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.877 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds