Wall clock time and date at job start Tue Mar 31 2020 10:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46903 * 2 1 4 4 C 1.38521 * 120.01737 * 125.28502 * 3 2 1 5 5 C 1.40009 * 117.82615 * 180.25613 * 4 3 2 6 6 C 1.48352 * 121.13874 * 179.73621 * 5 4 3 7 7 O 1.21838 * 119.99916 * 173.91959 * 6 5 4 8 8 N 1.33609 * 120.00290 * 353.92635 * 6 5 4 9 9 C 1.33104 * 120.00382 * 179.97438 * 8 6 5 10 10 C 1.41060 * 126.36784 * 359.95626 * 9 8 6 11 11 C 1.35092 * 108.24077 * 180.02562 * 10 9 8 12 12 N 1.36361 * 108.91920 * 359.72128 * 11 10 9 13 13 C 1.46504 * 125.85672 * 180.27486 * 12 11 10 14 14 C 1.50700 * 109.46950 * 275.19684 * 13 12 11 15 15 H 1.08008 * 119.99969 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00122 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46949 * 89.99787 * 18 16 14 20 20 H 1.48499 * 109.47233 * 209.99818 * 18 16 14 21 21 H 1.48503 * 109.47177 * 330.00177 * 18 16 14 22 22 N 1.37377 * 126.36954 * 179.97438 * 9 8 6 23 23 H 0.96995 * 126.35223 * 359.96508 * 22 9 8 24 24 C 1.39713 * 117.72258 * 359.47133 * 5 4 3 25 25 C 1.50705 * 120.17260 * 180.29029 * 24 5 4 26 26 N 1.31878 * 119.66187 * 0.27259 * 24 5 4 27 27 N 1.28282 * 122.32569 * 359.97438 * 26 24 5 28 28 H 1.08999 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47119 * 299.99684 * 1 2 3 30 30 H 1.09003 * 109.47496 * 60.00231 * 1 2 3 31 31 H 1.08999 * 109.47119 * 240.00316 * 2 1 3 32 32 H 1.09003 * 109.47496 * 119.99769 * 2 1 3 33 33 H 1.08006 * 121.09073 * 0.02562 * 4 3 2 34 34 H 1.08010 * 125.88028 * 359.97438 * 10 9 8 35 35 H 1.08000 * 125.54543 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47273 * 35.19882 * 13 12 11 37 37 H 1.08999 * 109.47346 * 155.20105 * 13 12 11 38 38 H 0.97001 * 120.00433 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46919 * 83.65639 * 25 24 5 40 40 H 1.08993 * 109.47399 * 203.66337 * 25 24 5 41 41 H 1.08999 * 109.46838 * 323.66568 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9164 1.8433 0.9791 5 6 3.3493 3.1742 0.9386 6 6 4.2913 3.7057 1.9540 7 8 4.7409 4.8321 1.8373 8 7 4.6466 2.9493 2.9964 9 6 5.4922 3.4260 3.9072 10 6 6.0919 4.7028 3.9045 11 6 6.8826 4.8008 4.9955 12 7 6.8079 3.6367 5.7017 13 6 7.5135 3.3447 6.9520 14 6 8.9006 2.8445 6.6410 15 1 9.2244 2.7537 5.6146 16 6 9.7563 2.5029 7.6666 17 7 9.3619 2.6131 8.9163 18 14 11.4760 1.8836 7.2811 19 1 12.4131 3.0338 7.2150 20 1 11.9156 0.9476 8.3469 21 1 11.4665 1.1772 5.9749 22 7 5.9433 2.7660 5.0244 23 1 5.7043 1.8661 5.2962 24 6 2.8683 3.9829 -0.0941 25 6 3.3034 5.4223 -0.1943 26 7 2.0317 3.4803 -0.9811 27 7 1.6349 2.2612 -0.9358 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2578 1.1691 1.7507 34 1 5.9450 5.4696 3.1582 35 1 7.4737 5.6629 5.2671 36 1 7.5804 4.2523 7.5519 37 1 6.9681 2.5816 7.5073 38 1 9.9641 2.3731 9.6380 39 1 4.2612 5.4772 -0.7117 40 1 2.5570 5.9897 -0.7501 41 1 3.4068 5.8411 0.8068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544759082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:35 Heat of formation + Delta-G solvation = 97.585839 kcal Electronic energy + Delta-G solvation = -24814.671690 eV Core-core repulsion = 21118.047495 eV Total energy + Delta-G solvation = -3696.624194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46572 -42.15547 -39.91549 -36.29913 -35.90812 -34.72144 -34.46173 -32.80398 -32.54133 -32.01660 -29.01116 -28.42330 -26.88040 -25.06951 -24.29259 -23.86093 -22.81396 -22.59431 -20.74248 -18.93715 -18.67507 -18.26921 -17.35291 -16.83223 -16.68688 -16.60394 -16.47461 -16.20311 -15.75550 -15.47653 -15.25155 -14.84398 -14.52674 -14.43708 -14.23283 -14.19197 -13.83064 -13.69588 -13.24651 -13.09993 -13.04989 -12.74370 -12.68825 -12.33771 -12.11467 -12.09295 -11.75419 -11.27623 -11.23527 -11.12682 -10.78497 -10.70175 -10.56160 -10.46334 -9.86132 -8.65024 -8.30908 -6.57309 -0.69739 -0.13877 0.27115 0.52336 1.38174 1.43008 1.49923 1.53602 2.29469 2.34926 2.59263 2.93617 2.94654 3.01677 3.16206 3.35443 3.54977 3.84376 3.86897 4.05729 4.25245 4.31756 4.39753 4.42877 4.58279 4.64617 4.75006 4.75880 4.84098 4.85064 4.91938 5.05320 5.08259 5.16178 5.22736 5.24587 5.36289 5.44559 5.50043 5.68536 5.91630 6.04562 6.35379 6.55747 6.69557 7.16825 7.63797 7.66452 8.64933 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019934 B = 0.002576 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.292328 B =10865.077274 C =11638.675202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C 0.052 3.948 4 C -0.054 4.054 5 C -0.114 4.114 6 C 0.527 3.473 7 O -0.579 6.579 8 N -0.697 5.697 9 C 0.455 3.545 10 C -0.339 4.339 11 C 0.180 3.820 12 N -0.340 5.340 13 C 0.265 3.735 14 C -0.566 4.566 15 H 0.061 0.939 16 C 0.032 3.968 17 N -0.912 5.912 18 Si 0.962 3.038 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.274 1.274 22 N -0.456 5.456 23 H 0.454 0.546 24 C 0.095 3.905 25 C -0.093 4.093 26 N -0.272 5.272 27 N -0.250 5.250 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.274 0.726 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.445 -1.747 -8.464 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.083 4.083 5 C -0.128 4.128 6 C 0.313 3.687 7 O -0.462 6.462 8 N -0.462 5.462 9 C 0.206 3.794 10 C -0.371 4.371 11 C 0.034 3.966 12 N -0.125 5.125 13 C 0.148 3.852 14 C -0.604 4.604 15 H 0.079 0.921 16 C -0.171 4.171 17 N -0.550 5.550 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.199 1.199 22 N -0.179 5.179 23 H 0.303 0.697 24 C -0.050 4.050 25 C -0.151 4.151 26 N -0.114 5.114 27 N -0.092 5.092 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.296 -1.892 -9.319 14.016 hybrid contribution 1.980 -0.387 1.392 2.451 sum -8.317 -2.280 -7.927 11.713 Atomic orbital electron populations 1.21684 0.93424 1.03162 1.01763 1.20595 0.97435 0.86989 1.05325 1.23399 0.94498 0.99817 0.91624 1.22877 0.92484 0.95192 0.97767 1.20991 0.99326 0.95704 0.96804 1.18715 0.81470 0.84251 0.84302 1.90561 1.55008 1.22208 1.78462 1.68657 1.28957 1.38963 1.09606 1.19246 0.87534 0.88317 0.84281 1.22451 1.09276 1.00512 1.04857 1.23490 0.94481 0.88942 0.89675 1.48016 1.35209 1.08002 1.21237 1.19815 0.89934 0.99653 0.75764 1.21588 0.98372 1.46726 0.93695 0.92101 1.25562 1.02249 0.94768 0.94513 1.69948 1.38197 1.47373 0.99466 0.85483 0.79495 0.78489 0.77841 1.19553 1.20699 1.19914 1.44592 1.38991 1.14327 1.19949 0.69659 1.23336 0.92155 0.99548 0.89988 1.20850 1.01702 0.87533 1.04965 1.72934 1.10307 1.06255 1.21869 1.72604 1.18404 0.97727 1.20498 0.89665 0.93472 0.92886 0.88409 0.87608 0.80656 0.80204 0.75712 0.90784 0.93593 0.91686 0.89737 0.89876 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.78 71.98 0.70 -1.52 16 2 C -0.06 -1.07 6.35 29.85 0.19 -0.88 16 3 C 0.05 1.31 6.25 42.62 0.27 1.58 16 4 C -0.05 -1.46 9.37 22.77 0.21 -1.25 16 5 C -0.11 -3.70 5.92 -19.80 -0.12 -3.82 16 6 C 0.53 18.90 7.65 87.12 0.67 19.57 16 7 O -0.58 -21.75 10.45 -4.79 -0.05 -21.80 16 8 N -0.70 -24.36 9.84 -311.13 -3.06 -27.42 16 9 C 0.45 15.46 8.07 133.87 1.08 16.54 16 10 C -0.34 -10.88 9.52 22.24 0.21 -10.67 16 11 C 0.18 5.07 11.46 83.26 0.95 6.03 16 12 N -0.34 -10.93 3.63 -350.81 -1.27 -12.21 16 13 C 0.27 9.93 6.19 85.63 0.53 10.46 16 14 C -0.57 -24.77 9.39 25.60 0.24 -24.53 16 15 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 16 C 0.03 1.45 5.46 84.66 0.46 1.91 16 17 N -0.91 -43.84 13.29 21.45 0.28 -43.56 16 18 Si 0.96 37.18 29.54 68.60 2.03 39.20 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 N -0.46 -14.12 7.38 -54.82 -0.40 -14.53 16 23 H 0.45 12.19 8.96 -213.29 -1.91 10.28 16 24 C 0.09 3.02 6.90 42.91 0.30 3.32 16 25 C -0.09 -2.58 8.98 71.24 0.64 -1.94 16 26 N -0.27 -8.88 11.42 -46.98 -0.54 -9.42 16 27 N -0.25 -7.58 11.04 -47.69 -0.53 -8.10 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.97 7.96 -2.39 -0.02 0.95 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.30 7.92 -2.39 -0.02 1.28 16 33 H 0.18 4.15 7.67 -2.91 -0.02 4.13 16 34 H 0.18 6.04 5.77 -2.91 -0.02 6.03 16 35 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.84 5.92 -2.39 -0.01 2.83 16 Total: -1.00 -58.20 354.55 1.96 -56.24 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.83 Total: 26.81 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.34 Total: 14.79 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -5.52 Total: -115.24 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.20 kcal Total: -58.20 1.96 -56.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544759082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.823 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds