Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46828 * 2 1 4 4 H 1.09002 * 109.47187 * 185.15952 * 3 2 1 5 5 C 1.50695 * 109.47167 * 305.15918 * 3 2 1 6 6 H 1.08006 * 119.99821 * 120.00746 * 5 3 2 7 7 C 1.37873 * 120.00377 * 299.99947 * 5 3 2 8 8 N 1.31516 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00238 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47590 * 90.00168 * 9 7 5 11 11 H 1.48510 * 109.47104 * 210.00280 * 9 7 5 12 12 H 1.48500 * 109.47051 * 329.99544 * 9 7 5 13 13 N 1.46901 * 109.47127 * 65.16357 * 3 2 1 14 14 C 1.46895 * 111.00496 * 85.89549 * 13 3 2 15 15 C 1.50693 * 109.47701 * 174.81458 * 14 13 3 16 16 C 1.33615 * 125.11854 * 89.99777 * 15 14 13 17 17 C 1.37966 * 115.06192 * 180.02562 * 16 15 14 18 18 C 1.34791 * 114.70882 * 359.97438 * 17 16 15 19 19 C 1.47830 * 125.27264 * 180.02562 * 18 17 16 20 20 C 1.39576 * 120.14005 * 359.72433 * 19 18 17 21 21 C 1.37967 * 119.84862 * 179.69858 * 20 19 18 22 22 C 1.38353 * 120.14163 * 0.60159 * 21 20 19 23 23 C 1.50701 * 119.85462 * 179.69567 * 22 21 20 24 24 C 1.38361 * 120.29573 * 359.67392 * 22 21 20 25 25 C 1.37957 * 120.14428 * 0.02691 * 24 22 21 26 26 S 1.75863 * 125.12037 * 270.30771 * 15 14 13 27 27 H 1.08999 * 109.47278 * 174.84497 * 1 2 3 28 28 H 1.08998 * 109.47095 * 294.84822 * 1 2 3 29 29 H 1.09002 * 109.47612 * 54.84760 * 1 2 3 30 30 H 1.08995 * 109.47008 * 240.00611 * 2 1 3 31 31 H 1.09000 * 109.47189 * 120.00182 * 2 1 3 32 32 H 0.96996 * 120.00049 * 180.02562 * 8 7 5 33 33 H 1.00899 * 110.99626 * 321.93717 * 13 3 2 34 34 H 1.09003 * 109.46921 * 54.81118 * 14 13 3 35 35 H 1.09006 * 109.47261 * 294.82290 * 14 13 3 36 36 H 1.07996 * 122.47013 * 0.02718 * 16 15 14 37 37 H 1.08004 * 122.64635 * 180.02562 * 17 16 15 38 38 H 1.07993 * 120.07640 * 359.97438 * 20 19 18 39 39 H 1.07992 * 119.92561 * 180.30278 * 21 20 19 40 40 H 1.08995 * 109.47416 * 269.98518 * 23 22 21 41 41 H 1.09003 * 109.46595 * 29.97724 * 23 22 21 42 42 H 1.08997 * 109.47280 * 149.97262 * 23 22 21 43 43 H 1.07998 * 119.92798 * 180.02562 * 24 22 21 44 44 H 1.07994 * 120.07510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8268 3.0629 -0.9839 7 6 1.6611 1.7561 -2.4511 8 7 2.4025 0.6916 -2.6675 9 14 0.9130 2.6816 -3.8910 10 1 1.8550 3.7358 -4.3451 11 1 0.6534 1.7359 -5.0062 12 1 -0.3644 3.3086 -3.4664 13 7 1.6546 2.0981 1.2569 14 6 2.6431 1.8367 2.3116 15 6 2.2831 2.6254 3.5442 16 6 1.4951 2.1909 4.5319 17 6 1.3034 3.0865 5.5636 18 6 1.9432 4.2635 5.4142 19 6 1.9007 5.3862 6.3749 20 6 1.1495 5.2782 7.5463 21 6 1.1191 6.3274 8.4417 22 6 1.8210 7.4893 8.1746 23 6 1.7776 8.6340 9.1539 24 6 2.5629 7.6050 7.0125 25 6 2.6068 6.5610 6.1117 26 16 2.8308 4.2592 3.8956 27 1 -0.3634 -1.0235 -0.0923 28 1 -0.3633 0.4318 0.9325 29 1 -0.3634 0.5917 -0.8402 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5612 0.3873 -3.5747 33 1 0.7319 1.8104 1.5466 34 1 3.6322 2.1359 1.9648 35 1 2.6480 0.7729 2.5495 36 1 1.0417 1.2108 4.5232 37 1 0.6898 2.8620 6.4236 38 1 0.5970 4.3737 7.7535 39 1 0.5422 6.2433 9.3508 40 1 0.9469 9.2941 8.9047 41 1 1.6417 8.2440 10.1627 42 1 2.7128 9.1914 9.1028 43 1 3.1089 8.5146 6.8101 44 1 3.1859 6.6527 5.2048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545872965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = 28.553743 kcal Electronic energy + Delta-G solvation = -22387.364310 eV Core-core repulsion = 19201.747122 eV Total energy + Delta-G solvation = -3185.617187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37074 -39.06931 -37.96875 -34.99536 -34.00373 -32.64571 -31.92398 -30.45063 -28.68302 -27.39777 -25.53436 -25.03623 -24.14504 -23.22820 -22.15966 -21.24179 -19.75698 -18.67731 -17.83848 -17.02285 -16.77927 -16.44828 -16.10979 -15.85245 -15.59336 -15.15149 -14.88868 -14.70512 -14.40457 -14.33949 -14.14816 -13.96637 -13.72704 -13.57643 -13.30071 -12.96480 -12.82267 -12.74695 -12.60927 -12.53843 -12.44201 -12.24640 -11.99351 -11.87833 -11.66725 -11.49793 -11.42515 -11.00809 -10.43653 -10.32952 -9.90856 -9.41862 -9.00710 -8.72557 -8.05896 -6.14158 -0.46257 0.46618 0.62921 0.74708 1.11360 1.42094 1.43757 1.53382 1.87014 2.45404 2.90087 3.22646 3.63904 3.68796 3.91809 4.02855 4.04680 4.09969 4.26745 4.39782 4.48687 4.54700 4.56473 4.61982 4.66506 4.70404 4.75998 4.84273 4.87507 4.90689 5.09502 5.10431 5.18279 5.24203 5.32924 5.33395 5.41888 5.46978 5.53953 5.67462 5.67779 5.70817 5.74528 5.82360 6.05663 6.30593 6.64723 6.79968 6.97263 7.53223 8.99127 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002499 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.357278 B =11201.008913 C =11862.356036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.001 1.001 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.130 3.870 15 C -0.171 4.171 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.159 4.159 19 C -0.037 4.037 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.127 4.127 26 S 0.112 5.888 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.335 0.665 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 9.845 24.565 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.314 5.314 14 C 0.000 4.000 15 C -0.289 4.289 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.276 4.276 19 C -0.039 4.039 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.146 4.146 26 S 0.380 5.620 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.158 0.842 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.807 11.374 23.428 26.056 hybrid contribution -1.017 -1.822 -0.618 2.176 sum -1.823 9.552 22.810 24.796 Atomic orbital electron populations 1.21484 0.95917 0.99655 1.00844 1.21953 0.96537 0.99732 0.99600 1.18989 0.93715 0.89623 0.86327 0.98354 1.21243 1.30386 1.11279 0.90827 0.93191 1.25571 0.95991 0.95901 1.00953 1.70002 1.39941 1.24975 1.21051 0.85673 0.78930 0.78393 0.79325 1.20719 1.20995 1.19483 1.60713 1.04559 1.63227 1.02933 1.20266 0.96249 0.95821 0.87711 1.24583 1.05589 0.98049 1.00707 1.20204 1.00381 1.02327 0.93807 1.20436 1.02006 0.92067 1.00974 1.23204 1.06505 0.98933 0.98987 1.18220 0.99554 0.91945 0.94156 1.21413 0.98282 1.00204 0.92697 1.21291 0.99695 0.92571 1.00145 1.20395 0.96310 0.96655 0.95877 1.20855 1.03310 0.95298 0.97472 1.21187 1.00001 0.98828 0.93985 1.21349 0.99731 0.93514 1.00028 1.84214 1.49735 1.13226 1.14817 0.93813 0.93273 0.93674 0.91877 0.95308 0.93176 0.84571 0.92051 0.93366 0.82922 0.81838 0.84132 0.83215 0.90291 0.90219 0.90758 0.84155 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.40 71.98 0.68 -4.34 16 2 C -0.14 -6.40 5.51 30.59 0.17 -6.23 16 3 C 0.22 11.05 2.33 44.17 0.10 11.16 16 4 H 0.00 -0.08 7.70 -2.39 -0.02 -0.10 16 5 C -0.50 -27.33 7.25 25.60 0.19 -27.15 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.78 5.28 84.65 0.45 1.22 16 8 N -0.92 -52.52 11.38 21.45 0.24 -52.27 16 9 Si 0.95 44.21 29.54 68.60 2.03 46.23 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.68 -28.97 6.19 -499.47 -3.09 -32.06 16 14 C 0.13 4.74 6.00 85.56 0.51 5.25 16 15 C -0.17 -5.44 6.07 24.63 0.15 -5.29 16 16 C -0.14 -3.68 10.03 21.16 0.21 -3.47 16 17 C -0.12 -3.02 9.65 21.41 0.21 -2.81 16 18 C -0.16 -4.22 6.37 24.02 0.15 -4.07 16 19 C -0.04 -0.88 5.87 -20.09 -0.12 -0.99 16 20 C -0.11 -2.00 9.54 22.53 0.21 -1.78 16 21 C -0.12 -1.84 9.68 22.23 0.22 -1.63 16 22 C -0.09 -1.43 5.89 -19.81 -0.12 -1.55 16 23 C -0.11 -1.05 10.01 71.24 0.71 -0.33 16 24 C -0.12 -2.22 9.68 22.23 0.22 -2.01 16 25 C -0.13 -2.90 9.60 22.52 0.22 -2.68 16 26 S 0.11 3.41 22.25 -56.49 -1.26 2.16 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.79 6.63 -2.39 -0.02 1.77 16 29 H 0.04 2.08 6.85 -2.39 -0.02 2.06 16 30 H 0.06 3.33 6.22 -2.39 -0.01 3.31 16 31 H 0.03 1.19 7.50 -2.39 -0.02 1.18 16 32 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.34 13.44 6.69 -89.69 -0.60 12.84 16 34 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 35 H 0.05 1.66 7.54 -2.38 -0.02 1.64 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 37 H 0.16 2.93 6.89 -2.91 -0.02 2.91 16 38 H 0.14 2.09 6.76 -2.91 -0.02 2.07 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 42 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.12 2.68 7.28 -2.91 -0.02 2.66 16 Total: -1.00 -62.13 369.59 2.47 -59.66 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.40 Total: 22.99 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 4.16 Total: -46.70 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.85 Total: -84.34 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.26 Total: 2.16 kcal Total: -62.13 2.47 -59.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545872965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.210 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds