Wall clock time and date at job start Tue Mar 31 2020 11:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47023 * 2 1 4 4 H 1.08993 * 109.46872 * 305.60571 * 3 2 1 5 5 C 1.50701 * 109.46733 * 185.60664 * 3 2 1 6 6 H 1.08006 * 119.99486 * 245.40535 * 5 3 2 7 7 C 1.37874 * 120.00284 * 65.40521 * 5 3 2 8 8 N 1.31512 * 119.99963 * 197.21500 * 7 5 3 9 9 Si 1.86801 * 119.99880 * 17.21548 * 7 5 3 10 10 H 1.48500 * 109.47123 * 86.81152 * 9 7 5 11 11 H 1.48496 * 109.47355 * 206.81317 * 9 7 5 12 12 H 1.48505 * 109.47208 * 326.81370 * 9 7 5 13 13 N 1.46903 * 109.46775 * 65.60820 * 3 2 1 14 14 C 1.46901 * 110.99628 * 251.61292 * 13 3 2 15 15 C 1.50696 * 109.47068 * 183.53965 * 14 13 3 16 16 C 1.33618 * 125.12250 * 89.99947 * 15 14 13 17 17 C 1.37954 * 115.06658 * 179.97438 * 16 15 14 18 18 C 1.34793 * 114.70576 * 0.02562 * 17 16 15 19 19 C 1.47835 * 125.27096 * 180.02562 * 18 17 16 20 20 C 1.39569 * 120.14134 * 359.72502 * 19 18 17 21 21 C 1.37962 * 119.85251 * 179.72212 * 20 19 18 22 22 C 1.38362 * 120.14258 * 0.57766 * 21 20 19 23 23 C 1.50704 * 119.85679 * 179.72188 * 22 21 20 24 24 C 1.38364 * 120.28901 * 359.69412 * 22 21 20 25 25 C 1.37957 * 120.14498 * 0.02562 * 24 22 21 26 26 S 1.75856 * 125.12157 * 269.69639 * 15 14 13 27 27 H 1.08994 * 109.47259 * 185.15972 * 1 2 3 28 28 H 1.09005 * 109.47009 * 65.15826 * 1 2 3 29 29 H 1.09004 * 109.47242 * 305.16367 * 1 2 3 30 30 H 1.08991 * 109.46954 * 120.00092 * 2 1 3 31 31 H 1.08995 * 109.46773 * 240.00434 * 2 1 3 32 32 H 0.96998 * 119.99667 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00111 * 15.56849 * 13 3 2 34 34 H 1.09004 * 109.47276 * 303.53989 * 14 13 3 35 35 H 1.08999 * 109.47245 * 63.53830 * 14 13 3 36 36 H 1.08001 * 122.46140 * 359.94623 * 16 15 14 37 37 H 1.07998 * 122.65039 * 179.97438 * 17 16 15 38 38 H 1.07996 * 120.07792 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.93396 * 180.31771 * 21 20 19 40 40 H 1.08995 * 109.46877 * 269.97674 * 23 22 21 41 41 H 1.09000 * 109.46596 * 29.97397 * 23 22 21 42 42 H 1.09002 * 109.47211 * 149.97644 * 23 22 21 43 43 H 1.08001 * 119.92242 * 180.02562 * 24 22 21 44 44 H 1.07998 * 120.07187 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5970 1.9845 -0.8355 5 6 3.5406 1.4448 -0.1388 6 1 4.1572 1.8070 0.6706 7 6 4.1263 0.9844 -1.2990 8 7 5.4022 0.6656 -1.3098 9 14 3.1077 0.8138 -2.8555 10 1 3.1000 2.1065 -3.5862 11 1 3.6972 -0.2400 -3.7199 12 1 1.7159 0.4391 -2.4977 13 7 1.6639 2.0948 1.2614 14 6 0.6038 3.0883 1.0446 15 6 0.3059 3.7961 2.3412 16 6 0.9088 4.9108 2.7647 17 6 0.4735 5.3830 3.9856 18 6 -0.4946 4.6439 4.5629 19 6 -1.1284 4.9353 5.8663 20 6 -0.7291 6.0493 6.6063 21 6 -1.3287 6.3189 7.8192 22 6 -2.3154 5.4810 8.3080 23 6 -2.9617 5.7781 9.6366 24 6 -2.7119 4.3719 7.5819 25 6 -2.1244 4.0943 6.3650 26 16 -0.8929 3.2837 3.5214 27 1 -0.3633 -1.0234 0.0924 28 1 -0.3633 0.4318 -0.9326 29 1 -0.3634 0.5919 0.8401 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 5.8143 0.3421 -2.1261 33 1 1.3855 1.4137 1.9517 34 1 0.9329 3.8146 0.3014 35 1 -0.2966 2.5872 0.6890 36 1 1.6804 5.4054 2.1933 37 1 0.8771 6.2741 4.4432 38 1 0.0440 6.7016 6.2280 39 1 -1.0243 7.1834 8.3905 40 1 -2.4026 5.2839 10.4311 41 1 -2.9618 6.8546 9.8079 42 1 -3.9879 5.4108 9.6318 43 1 -3.4829 3.7222 7.9689 44 1 -2.4344 3.2280 5.7994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545872967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:03 Heat of formation + Delta-G solvation = 31.103680 kcal Electronic energy + Delta-G solvation = -22432.877980 eV Core-core repulsion = 19247.371366 eV Total energy + Delta-G solvation = -3185.506614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38247 -39.11286 -38.06773 -34.89936 -34.17226 -33.05481 -31.93594 -30.65496 -29.28136 -27.61595 -25.50583 -24.42609 -23.93200 -23.14736 -22.17538 -21.72875 -19.87221 -18.95921 -18.12790 -17.13576 -16.83904 -16.39348 -16.01851 -15.87605 -15.77076 -15.59230 -14.87438 -14.74539 -14.50665 -14.39234 -14.13686 -13.95546 -13.72328 -13.53993 -13.40387 -13.30348 -13.00355 -12.76232 -12.64435 -12.60504 -12.37342 -12.32763 -12.17334 -11.96173 -11.67192 -11.54489 -11.38291 -11.37010 -10.54063 -10.33539 -9.91629 -9.43114 -9.02331 -8.74550 -8.26134 -6.21551 -0.49305 0.45897 0.58776 0.72957 1.00456 1.34569 1.37956 1.46363 1.86017 2.37099 2.89043 3.05842 3.56564 3.64035 3.87886 3.94718 4.03915 4.08209 4.20755 4.30756 4.37819 4.38807 4.47465 4.48355 4.59301 4.66372 4.68745 4.81149 4.83599 4.86441 4.89139 5.04618 5.10208 5.12980 5.17255 5.20190 5.27535 5.34812 5.48521 5.48962 5.51632 5.65637 5.66898 5.74787 6.03692 6.04694 6.63899 6.76489 6.83727 7.40388 8.91347 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.030825 B = 0.002477 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.128358 B =11299.475092 C =11720.806550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.200 3.800 4 H 0.023 0.977 5 C -0.505 4.505 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.228 1.228 13 N -0.678 5.678 14 C 0.131 3.869 15 C -0.177 4.177 16 C -0.129 4.129 17 C -0.128 4.128 18 C -0.154 4.154 19 C -0.038 4.038 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.124 4.124 26 S 0.120 5.880 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.263 0.737 33 H 0.333 0.667 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.116 10.129 17.980 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.090 3.910 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.585 5.585 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.151 1.151 13 N -0.309 5.309 14 C 0.000 4.000 15 C -0.294 4.294 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.271 4.271 19 C -0.040 4.040 20 C -0.128 4.128 21 C -0.138 4.138 22 C -0.092 4.092 23 C -0.170 4.170 24 C -0.139 4.139 25 C -0.143 4.143 26 S 0.387 5.613 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.161 0.839 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.498 9.289 17.876 29.462 hybrid contribution 0.911 0.310 -1.393 1.693 sum -20.587 9.599 16.483 28.065 Atomic orbital electron populations 1.21859 0.95045 1.02201 1.01371 1.22398 0.95688 0.99210 1.01245 1.19359 0.93490 0.90175 0.87928 0.95871 1.21255 0.91707 1.40543 1.00889 0.95236 1.25764 0.95897 0.94461 1.02245 1.70140 1.14247 1.45335 1.28736 0.86178 0.81437 0.77912 0.79423 1.20216 1.21564 1.15063 1.60460 1.40310 1.19098 1.11073 1.20480 0.93291 0.94645 0.91594 1.24609 1.02420 1.00919 1.01497 1.20165 1.01541 0.97040 0.97226 1.20434 0.97878 1.02130 0.95379 1.23130 1.03950 1.00619 0.99439 1.18206 0.97175 0.96999 0.91601 1.21405 1.00134 0.96269 0.95012 1.21280 0.96433 1.00473 0.95640 1.20404 0.96463 0.94591 0.97715 1.20859 1.00695 1.03110 0.92309 1.21205 1.00676 0.97888 0.94117 1.21346 0.96514 0.99191 0.97203 1.83808 1.38025 1.27577 1.11903 0.91471 0.93015 0.92594 0.92881 0.93304 0.92763 0.84872 0.90200 0.93544 0.84099 0.82377 0.84566 0.83469 0.90298 0.90374 0.90588 0.83874 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.45 71.98 0.68 -3.90 16 2 C -0.15 -5.93 4.56 30.60 0.14 -5.79 16 3 C 0.20 9.09 1.73 44.17 0.08 9.16 16 4 H 0.02 1.06 6.15 -2.39 -0.01 1.04 16 5 C -0.51 -29.15 9.25 25.60 0.24 -28.92 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.79 5.30 84.65 0.45 1.24 16 8 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 9 Si 0.93 43.35 25.86 68.60 1.77 45.13 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.23 -9.48 5.65 99.48 0.56 -8.92 16 13 N -0.68 -27.35 6.02 -499.45 -3.01 -30.36 16 14 C 0.13 4.36 5.57 85.56 0.48 4.84 16 15 C -0.18 -5.35 6.05 24.64 0.15 -5.20 16 16 C -0.13 -3.76 10.03 21.15 0.21 -3.55 16 17 C -0.13 -3.24 9.65 21.41 0.21 -3.03 16 18 C -0.15 -3.92 6.37 24.02 0.15 -3.77 16 19 C -0.04 -0.86 5.87 -20.10 -0.12 -0.97 16 20 C -0.11 -2.05 9.54 22.53 0.21 -1.83 16 21 C -0.12 -1.85 9.68 22.23 0.22 -1.63 16 22 C -0.09 -1.34 5.89 -19.80 -0.12 -1.46 16 23 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 24 C -0.12 -1.99 9.68 22.23 0.22 -1.77 16 25 C -0.12 -2.54 9.60 22.52 0.22 -2.32 16 26 S 0.12 3.12 22.24 -56.49 -1.26 1.86 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.06 1.60 5.97 -2.39 -0.01 1.58 16 30 H 0.05 2.18 8.05 -2.39 -0.02 2.16 16 31 H 0.05 2.10 5.17 -2.39 -0.01 2.09 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.33 12.66 7.70 -89.70 -0.69 11.97 16 34 H 0.08 2.77 8.06 -2.39 -0.02 2.75 16 35 H 0.05 1.41 6.61 -2.39 -0.02 1.39 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.16 3.18 6.89 -2.91 -0.02 3.16 16 38 H 0.14 2.17 6.76 -2.91 -0.02 2.15 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 42 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.12 2.38 7.29 -2.91 -0.02 2.36 16 Total: -1.00 -68.24 365.97 2.09 -66.15 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.17 Total: 25.68 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 4.12 Total: -49.17 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.71 Total: -89.65 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.77 Total: 45.13 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.26 Total: 1.86 kcal Total: -68.24 2.09 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545872967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.249 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds