Wall clock time and date at job start Tue Mar 31 2020 11:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 N 1.46898 * 109.47441 * 119.99984 * 2 1 3 5 5 C 1.46900 * 111.00628 * 152.90299 * 4 2 1 6 6 C 1.50693 * 109.47208 * 288.24294 * 5 4 2 7 7 H 1.08001 * 120.00113 * 4.61167 * 6 5 4 8 8 C 1.37879 * 119.99921 * 184.61690 * 6 5 4 9 9 N 1.31518 * 119.99832 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00174 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47271 * 119.99644 * 10 8 6 13 13 H 1.48505 * 109.46763 * 239.99821 * 10 8 6 14 14 C 1.46906 * 111.00068 * 276.86349 * 4 2 1 15 15 C 1.50697 * 109.46977 * 76.11888 * 14 4 2 16 16 C 1.33616 * 125.11728 * 79.80775 * 15 14 4 17 17 C 1.37965 * 115.06161 * 180.02562 * 16 15 14 18 18 C 1.34792 * 114.70827 * 0.02562 * 17 16 15 19 19 C 1.47823 * 125.27424 * 179.97438 * 18 17 16 20 20 C 1.39571 * 120.14396 * 359.73572 * 19 18 17 21 21 C 1.37962 * 119.85451 * 179.72313 * 20 19 18 22 22 C 1.38354 * 120.14368 * 0.58093 * 21 20 19 23 23 C 1.38359 * 120.29076 * 359.70021 * 22 21 20 24 24 C 1.37952 * 120.14637 * 359.97438 * 23 22 21 25 25 S 1.75856 * 125.12297 * 259.84371 * 15 14 4 26 26 H 1.09003 * 109.47032 * 305.75267 * 1 2 3 27 27 H 1.09002 * 109.47099 * 65.75302 * 1 2 3 28 28 H 1.09001 * 109.47115 * 185.75697 * 1 2 3 29 29 H 1.09001 * 109.47679 * 239.99974 * 2 1 3 30 30 H 1.09004 * 109.47073 * 170.87103 * 3 2 1 31 31 H 1.08999 * 109.46894 * 290.86797 * 3 2 1 32 32 H 1.09003 * 109.47101 * 50.87037 * 3 2 1 33 33 H 1.09009 * 109.46473 * 48.23808 * 5 4 2 34 34 H 1.08997 * 109.47160 * 168.23217 * 5 4 2 35 35 H 0.97002 * 119.99489 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.46718 * 316.11835 * 14 4 2 37 37 H 1.09000 * 109.46855 * 196.11975 * 14 4 2 38 38 H 1.07999 * 122.47029 * 0.05682 * 16 15 14 39 39 H 1.08004 * 122.64757 * 180.02562 * 17 16 15 40 40 H 1.08005 * 120.07128 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.92857 * 180.29544 * 21 20 19 42 42 H 1.08003 * 119.85360 * 179.71922 * 22 21 20 43 43 H 1.08002 * 119.92730 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.07943 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3462 -1.2782 0.9645 6 6 3.2158 -2.4647 0.0448 7 1 2.2569 -2.7101 -0.3874 8 6 4.3205 -3.2371 -0.2450 9 7 5.4883 -2.9380 0.2810 10 14 4.1588 -4.7084 -1.3845 11 1 2.7504 -4.8296 -1.8394 12 1 5.0452 -4.5229 -2.5613 13 1 4.5520 -5.9426 -0.6582 14 6 2.0407 0.2113 2.3574 15 6 0.6369 0.4018 2.8713 16 6 -0.0201 -0.4618 3.6509 17 6 -1.2987 -0.0785 3.9997 18 6 -1.6871 1.1106 3.4977 19 6 -3.0044 1.7427 3.7220 20 6 -3.9658 1.1007 4.5039 21 6 -5.1912 1.6986 4.7140 22 6 -5.4724 2.9265 4.1417 23 6 -4.5259 3.5656 3.3608 24 6 -3.2942 2.9817 3.1483 25 16 -0.3835 1.7939 2.5346 26 1 -0.3633 0.6005 0.8340 27 1 -0.3633 0.4220 -0.9370 28 1 -0.3633 -1.0225 0.1031 29 1 1.8934 -0.5138 -0.8900 30 1 3.1177 1.4468 0.1631 31 1 1.8159 1.9070 -0.9603 32 1 1.5496 2.0013 0.7972 33 1 3.9964 -0.5329 0.5062 34 1 3.7747 -1.5995 1.9138 35 1 6.2654 -3.4816 0.0774 36 1 2.4522 1.1752 2.0584 37 1 2.6601 -0.2202 3.1437 38 1 0.4177 -1.3912 3.9840 39 1 -1.9380 -0.6835 4.6256 40 1 -3.7492 0.1401 4.9476 41 1 -5.9343 1.2051 5.3228 42 1 -6.4349 3.3882 4.3056 43 1 -4.7515 4.5241 2.9172 44 1 -2.5561 3.4817 2.5388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000560463067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:10 Heat of formation + Delta-G solvation = 64.511256 kcal Electronic energy + Delta-G solvation = -23343.959903 eV Core-core repulsion = 20159.901951 eV Total energy + Delta-G solvation = -3184.057953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.40409 -38.40539 -36.88084 -32.91585 -32.43788 -31.16781 -30.97332 -29.29505 -26.91268 -26.43964 -25.02714 -23.30709 -22.37034 -22.03453 -21.83089 -19.14789 -18.77704 -17.33140 -16.47497 -16.19065 -15.68619 -15.10633 -14.89781 -14.69550 -14.60311 -14.23547 -13.64569 -13.53916 -13.33240 -13.10928 -12.79706 -12.55166 -12.42722 -12.14893 -11.92555 -11.76937 -11.60182 -11.48911 -11.26433 -11.00849 -10.89061 -10.73843 -10.69564 -10.49697 -10.39993 -10.09211 -9.77357 -9.48030 -9.22224 -9.16112 -8.44845 -7.98056 -7.80108 -7.25412 -6.03362 -4.04010 0.50267 1.20564 1.67609 1.73977 2.13388 2.98277 3.30737 3.38417 3.43805 3.73254 4.42760 4.54517 4.70780 4.75967 4.91113 4.95843 5.16407 5.23208 5.31281 5.32837 5.54823 5.55685 5.64384 5.68697 5.75034 5.84662 5.87790 5.92258 6.07828 6.17645 6.19837 6.27297 6.30148 6.30795 6.34285 6.43429 6.48890 6.57911 6.73870 6.77781 6.85114 6.89736 7.25217 7.32896 7.81686 8.08070 8.20927 8.52388 9.04022 9.60042 11.07239 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.002927 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.941197 B = 9562.947942 C = 9793.060823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.080 3.920 3 C -0.177 4.177 4 N -0.521 5.521 5 C 0.193 3.807 6 C -0.502 4.502 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.107 3.893 15 C -0.132 4.132 16 C -0.131 4.131 17 C -0.110 4.110 18 C -0.174 4.174 19 C 0.001 3.999 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.113 4.113 24 C -0.118 4.118 25 S 0.114 5.886 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.047 0.953 33 H -0.009 1.009 34 H 0.032 0.968 35 H 0.260 0.740 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.722 12.451 7.910 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 C -0.236 4.236 4 N -0.245 5.245 5 C 0.068 3.932 6 C -0.540 4.540 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.023 4.023 15 C -0.250 4.250 16 C -0.160 4.160 17 C -0.142 4.142 18 C -0.291 4.291 19 C -0.001 4.001 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.131 4.131 24 C -0.137 4.137 25 S 0.382 5.618 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.009 0.991 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.609 13.330 7.175 23.222 hybrid contribution 0.453 -1.554 -0.029 1.619 sum -17.157 11.776 7.146 22.002 Atomic orbital electron populations 1.22372 0.95825 1.02366 1.01138 1.21623 0.94715 0.91472 0.95106 1.22454 1.01255 0.98986 1.00858 1.62312 1.30149 1.30282 1.01771 1.19799 0.82525 0.93675 0.97208 1.21178 0.95006 1.10879 1.26971 0.91820 1.24977 0.95248 0.97891 0.96512 1.69965 0.99652 1.39720 1.44597 0.86463 0.78149 0.82510 0.80447 1.19646 1.21163 1.21047 1.20779 0.88878 0.97143 0.95525 1.24771 1.01012 0.96852 1.02374 1.19964 0.94149 1.01020 1.00903 1.20273 0.96635 0.95557 1.01699 1.22892 0.97996 1.00512 1.07687 1.18114 0.90954 0.93874 0.97163 1.21203 0.93096 1.00009 0.98563 1.21068 0.96691 0.95662 0.99855 1.21190 0.99407 0.95740 0.98283 1.21037 0.93423 0.99940 0.98717 1.21229 0.97404 0.94915 1.00169 1.83951 1.06180 1.23052 1.48633 0.91734 0.93891 0.92432 0.89285 0.92482 0.92786 0.93434 0.99108 0.94960 0.93012 0.93344 0.89534 0.83881 0.84637 0.85657 0.85858 0.86112 0.85888 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.91 37.15 0.33 -2.39 16 2 C 0.08 1.53 2.68 -67.72 -0.18 1.35 16 3 C -0.18 -2.94 7.79 37.16 0.29 -2.65 16 4 N -0.52 -10.90 4.29 -229.52 -0.99 -11.89 16 5 C 0.19 4.86 4.64 -4.98 -0.02 4.84 16 6 C -0.50 -13.87 8.36 -34.44 -0.29 -14.16 16 7 H 0.06 1.77 7.65 -52.49 -0.40 1.37 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.11 1.90 5.02 -4.97 -0.02 1.87 16 15 C -0.13 -2.08 4.48 -35.93 -0.16 -2.25 16 16 C -0.13 -1.97 10.03 -41.30 -0.41 -2.38 16 17 C -0.11 -1.47 9.65 -40.90 -0.39 -1.86 16 18 C -0.17 -2.33 6.37 -36.88 -0.24 -2.56 16 19 C 0.00 0.01 5.87 -104.98 -0.62 -0.61 16 20 C -0.11 -1.14 9.54 -39.19 -0.37 -1.51 16 21 C -0.11 -1.02 10.03 -39.64 -0.40 -1.42 16 22 C -0.13 -1.09 10.04 -39.49 -0.40 -1.49 16 23 C -0.11 -1.04 10.03 -39.64 -0.40 -1.44 16 24 C -0.12 -1.31 9.60 -39.19 -0.38 -1.68 16 25 S 0.11 1.57 17.69 -107.50 -1.90 -0.33 16 26 H 0.06 1.04 3.11 -28.32 -0.09 0.95 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.92 6.96 -51.93 -0.36 1.56 16 30 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.72 4.99 -51.93 -0.26 0.46 16 33 H -0.01 -0.24 7.32 -51.92 -0.38 -0.62 16 34 H 0.03 0.87 7.68 -51.93 -0.40 0.47 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.05 0.83 5.24 -51.93 -0.27 0.55 16 37 H 0.09 1.54 7.64 -51.93 -0.40 1.15 16 38 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.14 1.49 6.89 -52.48 -0.36 1.12 16 40 H 0.13 1.13 6.76 -52.48 -0.35 0.78 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.26 7.29 -52.49 -0.38 0.88 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -29.74 358.26 -11.65 -41.39 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.12 Total: 1.42 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -3.76 Total: -26.90 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.25 Total: -37.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.90 Total: -0.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.74 -11.65 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560463067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.901 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds