Wall clock time and date at job start Tue Mar 31 2020 11:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47271 * 2 1 4 4 N 1.46898 * 109.47441 * 119.99984 * 2 1 3 5 5 C 1.46900 * 111.00628 * 152.90299 * 4 2 1 6 6 C 1.50693 * 109.47208 * 288.24294 * 5 4 2 7 7 H 1.08001 * 120.00113 * 4.61167 * 6 5 4 8 8 C 1.37879 * 119.99921 * 184.61690 * 6 5 4 9 9 N 1.31518 * 119.99832 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00174 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47271 * 119.99644 * 10 8 6 13 13 H 1.48505 * 109.46763 * 239.99821 * 10 8 6 14 14 C 1.46906 * 111.00068 * 276.86349 * 4 2 1 15 15 C 1.50697 * 109.46977 * 76.11888 * 14 4 2 16 16 C 1.33616 * 125.11728 * 79.80775 * 15 14 4 17 17 C 1.37965 * 115.06161 * 180.02562 * 16 15 14 18 18 C 1.34792 * 114.70827 * 0.02562 * 17 16 15 19 19 C 1.47823 * 125.27424 * 179.97438 * 18 17 16 20 20 C 1.39571 * 120.14396 * 359.73572 * 19 18 17 21 21 C 1.37962 * 119.85451 * 179.72313 * 20 19 18 22 22 C 1.38354 * 120.14368 * 0.58093 * 21 20 19 23 23 C 1.38359 * 120.29076 * 359.70021 * 22 21 20 24 24 C 1.37952 * 120.14637 * 359.97438 * 23 22 21 25 25 S 1.75856 * 125.12297 * 259.84371 * 15 14 4 26 26 H 1.09003 * 109.47032 * 305.75267 * 1 2 3 27 27 H 1.09002 * 109.47099 * 65.75302 * 1 2 3 28 28 H 1.09001 * 109.47115 * 185.75697 * 1 2 3 29 29 H 1.09001 * 109.47679 * 239.99974 * 2 1 3 30 30 H 1.09004 * 109.47073 * 170.87103 * 3 2 1 31 31 H 1.08999 * 109.46894 * 290.86797 * 3 2 1 32 32 H 1.09003 * 109.47101 * 50.87037 * 3 2 1 33 33 H 1.09009 * 109.46473 * 48.23808 * 5 4 2 34 34 H 1.08997 * 109.47160 * 168.23217 * 5 4 2 35 35 H 0.97002 * 119.99489 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.46718 * 316.11835 * 14 4 2 37 37 H 1.09000 * 109.46855 * 196.11975 * 14 4 2 38 38 H 1.07999 * 122.47029 * 0.05682 * 16 15 14 39 39 H 1.08004 * 122.64757 * 180.02562 * 17 16 15 40 40 H 1.08005 * 120.07128 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.92857 * 180.29544 * 21 20 19 42 42 H 1.08003 * 119.85360 * 179.71922 * 22 21 20 43 43 H 1.08002 * 119.92730 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.07943 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3462 -1.2782 0.9645 6 6 3.2158 -2.4647 0.0448 7 1 2.2569 -2.7101 -0.3874 8 6 4.3205 -3.2371 -0.2450 9 7 5.4883 -2.9380 0.2810 10 14 4.1588 -4.7084 -1.3845 11 1 2.7504 -4.8296 -1.8394 12 1 5.0452 -4.5229 -2.5613 13 1 4.5520 -5.9426 -0.6582 14 6 2.0407 0.2113 2.3574 15 6 0.6369 0.4018 2.8713 16 6 -0.0201 -0.4618 3.6509 17 6 -1.2987 -0.0785 3.9997 18 6 -1.6871 1.1106 3.4977 19 6 -3.0044 1.7427 3.7220 20 6 -3.9658 1.1007 4.5039 21 6 -5.1912 1.6986 4.7140 22 6 -5.4724 2.9265 4.1417 23 6 -4.5259 3.5656 3.3608 24 6 -3.2942 2.9817 3.1483 25 16 -0.3835 1.7939 2.5346 26 1 -0.3633 0.6005 0.8340 27 1 -0.3633 0.4220 -0.9370 28 1 -0.3633 -1.0225 0.1031 29 1 1.8934 -0.5138 -0.8900 30 1 3.1177 1.4468 0.1631 31 1 1.8159 1.9070 -0.9603 32 1 1.5496 2.0013 0.7972 33 1 3.9964 -0.5329 0.5062 34 1 3.7747 -1.5995 1.9138 35 1 6.2654 -3.4816 0.0774 36 1 2.4522 1.1752 2.0584 37 1 2.6601 -0.2202 3.1437 38 1 0.4177 -1.3912 3.9840 39 1 -1.9380 -0.6835 4.6256 40 1 -3.7492 0.1401 4.9476 41 1 -5.9343 1.2051 5.3228 42 1 -6.4349 3.3882 4.3056 43 1 -4.7515 4.5241 2.9172 44 1 -2.5561 3.4817 2.5388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000560463067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:09 Heat of formation + Delta-G solvation = 50.008716 kcal Electronic energy + Delta-G solvation = -23344.588780 eV Core-core repulsion = 20159.901951 eV Total energy + Delta-G solvation = -3184.686830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24385 -39.79720 -38.08097 -34.97490 -33.47018 -32.53529 -31.86715 -30.68560 -28.36203 -28.00382 -26.39655 -24.37149 -23.94276 -23.26000 -22.75597 -20.68488 -19.82750 -18.51756 -18.10486 -17.47429 -17.02986 -16.52946 -16.11912 -16.02075 -15.69180 -15.52746 -14.88453 -14.61770 -14.53900 -14.30480 -14.07898 -13.92301 -13.69585 -13.54554 -13.41626 -13.16266 -12.96871 -12.77291 -12.58840 -12.46451 -12.38169 -12.17280 -12.09629 -11.97804 -11.70855 -11.66314 -11.41157 -11.27299 -10.62151 -10.42483 -9.87505 -9.10438 -8.98509 -8.79696 -8.19487 -6.28677 -0.45734 0.49264 0.58238 0.79040 1.00828 1.39352 1.40338 1.53727 1.90560 2.40343 2.96938 3.11770 3.36212 3.65588 3.86791 4.02845 4.08348 4.09724 4.16596 4.29447 4.38467 4.48241 4.49812 4.53977 4.59032 4.68792 4.76742 4.78547 4.82765 4.93990 4.95839 5.01386 5.13297 5.15533 5.21029 5.22520 5.37301 5.41169 5.50477 5.54804 5.58431 5.61146 5.67772 5.69131 6.07267 6.07786 6.41100 6.63105 6.86964 7.40277 8.90822 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.002927 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.941197 B = 9562.947942 C = 9793.060823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 C -0.169 4.169 4 N -0.529 5.529 5 C 0.210 3.790 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.111 3.889 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.161 4.161 19 C -0.030 4.030 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.131 4.131 25 S 0.132 5.868 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.063 0.937 33 H -0.033 1.033 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.135 0.865 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.901 13.365 8.024 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 C -0.227 4.227 4 N -0.253 5.253 5 C 0.084 3.916 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.018 4.018 15 C -0.282 4.282 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.278 4.278 19 C -0.032 4.032 20 C -0.135 4.135 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.150 4.150 25 S 0.400 5.600 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.081 0.919 33 H -0.015 1.015 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.801 14.259 7.292 26.251 hybrid contribution 1.270 -1.727 0.017 2.144 sum -19.531 12.532 7.308 24.329 Atomic orbital electron populations 1.22319 0.93946 1.01750 1.02896 1.21629 0.96094 0.92387 0.93055 1.22353 1.00126 0.97573 1.02687 1.62238 1.27267 1.32223 1.03572 1.19405 0.84331 0.92795 0.95072 1.21436 0.94820 1.11741 1.27385 0.92450 1.25844 0.94830 1.00801 0.98017 1.70082 1.00412 1.41037 1.45901 0.85393 0.78352 0.78811 0.78426 1.19046 1.20381 1.20401 1.20671 0.90669 0.96516 0.93957 1.24482 1.00549 0.98855 1.04314 1.20100 0.94887 1.00597 1.00261 1.20404 0.96214 0.96154 1.02670 1.23196 0.98327 1.00111 1.06182 1.18235 0.90771 0.94921 0.99268 1.21437 0.93431 1.00491 0.98171 1.21428 0.96549 0.95868 0.99747 1.21613 1.00283 0.95377 0.96790 1.21357 0.92785 1.00838 0.98667 1.21381 0.98388 0.94826 1.00398 1.83738 1.05746 1.21687 1.48785 0.90418 0.91759 0.94189 0.92314 0.94191 0.90634 0.91864 1.01534 0.97577 0.92736 0.92735 0.90648 0.84464 0.82384 0.84721 0.83304 0.83288 0.83670 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 8.91 71.98 0.64 -4.47 16 2 C 0.08 3.01 2.68 44.91 0.12 3.13 16 3 C -0.17 -5.62 7.79 71.98 0.56 -5.06 16 4 N -0.53 -23.12 4.29 -880.08 -3.78 -26.90 16 5 C 0.21 11.21 4.64 85.55 0.40 11.61 16 6 C -0.52 -29.56 8.36 25.60 0.21 -29.34 16 7 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 8 C 0.00 0.17 5.46 84.65 0.46 0.63 16 9 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 10 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.11 4.12 5.02 85.55 0.43 4.55 16 15 C -0.16 -5.24 4.48 24.64 0.11 -5.13 16 16 C -0.13 -3.88 10.03 21.16 0.21 -3.67 16 17 C -0.12 -3.19 9.65 21.41 0.21 -2.98 16 18 C -0.16 -4.10 6.37 24.02 0.15 -3.95 16 19 C -0.03 -0.67 5.87 -20.10 -0.12 -0.79 16 20 C -0.12 -2.13 9.54 22.53 0.21 -1.91 16 21 C -0.12 -1.69 10.03 22.23 0.22 -1.47 16 22 C -0.12 -1.63 10.04 22.33 0.22 -1.40 16 23 C -0.12 -1.82 10.03 22.23 0.22 -1.60 16 24 C -0.13 -2.62 9.60 22.52 0.22 -2.41 16 25 S 0.13 3.53 17.69 -56.49 -1.00 2.53 16 26 H 0.08 2.43 3.11 -17.40 -0.05 2.38 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 2.64 6.96 -2.39 -0.02 2.62 16 30 H 0.04 1.45 7.13 -2.39 -0.02 1.43 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 1.88 4.99 -2.39 -0.01 1.87 16 33 H -0.03 -1.88 7.32 -2.38 -0.02 -1.90 16 34 H 0.01 0.35 7.68 -2.39 -0.02 0.33 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.05 1.92 5.24 -2.39 -0.01 1.91 16 37 H 0.08 2.88 7.64 -2.39 -0.02 2.86 16 38 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.16 3.22 6.89 -2.91 -0.02 3.20 16 40 H 0.13 2.11 6.76 -2.91 -0.02 2.09 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.12 2.32 7.29 -2.91 -0.02 2.29 16 Total: -1.00 -65.73 358.26 2.97 -62.76 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.95 Total: 14.94 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 4.49 Total: -44.26 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.49 Total: -82.97 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.00 Total: 2.53 kcal Total: -65.73 2.97 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000560463067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.766 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds