Wall clock time and date at job start Tue Mar 31 2020 11:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 C 1.52998 * 109.46969 * 239.99735 * 2 1 3 5 5 N 1.46501 * 109.46644 * 120.00313 * 2 1 3 6 6 C 1.34814 * 126.59824 * 74.99869 * 5 2 1 7 7 C 1.36621 * 106.83722 * 180.02562 * 6 5 2 8 8 C 1.47482 * 125.77113 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99649 * 179.97438 * 8 7 6 11 11 C 1.39392 * 119.99821 * 175.13620 * 10 8 7 12 12 C 1.38623 * 119.58316 * 184.94190 * 11 10 8 13 13 C 1.40800 * 118.79330 * 179.78146 * 12 11 10 14 14 C 1.41539 * 120.99572 * 180.23853 * 13 12 11 15 15 H 1.08001 * 120.00314 * 203.90285 * 14 13 12 16 16 C 1.40035 * 119.99974 * 23.89874 * 14 13 12 17 17 N 1.30740 * 119.99513 * 16.83203 * 16 14 13 18 18 Si 1.86803 * 119.99988 * 196.82877 * 16 14 13 19 19 H 1.48492 * 109.46782 * 90.00415 * 18 16 14 20 20 H 1.48498 * 109.46818 * 209.99938 * 18 16 14 21 21 H 1.48490 * 109.47227 * 329.99945 * 18 16 14 22 22 C 1.41183 * 118.00783 * 0.48417 * 13 12 11 23 23 C 1.37580 * 119.02230 * 359.75892 * 22 13 12 24 24 N 1.32081 * 121.10981 * 359.97438 * 23 22 13 25 25 N 1.34407 * 108.45223 * 0.26225 * 7 6 5 26 26 N 1.28757 * 109.52569 * 359.55245 * 25 7 6 27 27 H 1.08998 * 109.46957 * 300.00312 * 1 2 3 28 28 H 1.08998 * 109.47152 * 59.99729 * 1 2 3 29 29 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46658 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47278 * 300.00193 * 3 2 1 32 32 H 1.08995 * 109.46932 * 60.00133 * 3 2 1 33 33 H 1.09001 * 109.47359 * 300.00630 * 4 2 1 34 34 H 1.09006 * 109.46835 * 59.99961 * 4 2 1 35 35 H 1.08998 * 109.47438 * 180.02562 * 4 2 1 36 36 H 1.07998 * 126.57955 * 0.02562 * 6 5 2 37 37 H 0.96993 * 120.00384 * 354.86636 * 10 8 7 38 38 H 1.07998 * 120.59845 * 0.02562 * 12 11 10 39 39 H 0.97007 * 119.99791 * 179.97438 * 17 16 14 40 40 H 1.08004 * 120.48688 * 179.77656 * 22 13 12 41 41 H 1.07999 * 119.44393 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0220 -2.0217 1.4105 7 6 2.5627 -2.2215 2.6492 8 6 2.7645 -3.5290 3.3010 9 8 2.4383 -4.5508 2.7282 10 7 3.3114 -3.5913 4.5313 11 6 3.4093 -4.8162 5.1893 12 6 3.8779 -4.8571 6.4932 13 6 3.9656 -6.1029 7.1436 14 6 4.4327 -6.1981 8.4763 15 1 4.8580 -7.1238 8.8346 16 6 4.3434 -5.0918 9.3302 17 7 3.5517 -4.0959 9.0291 18 14 5.3554 -5.0392 10.8995 19 1 6.6686 -4.4045 10.6205 20 1 4.6325 -4.2492 11.9284 21 1 5.5695 -6.4218 11.3970 22 6 3.5786 -7.2547 6.4248 23 6 3.1306 -7.1152 5.1315 24 7 3.0582 -5.9273 4.5587 25 7 2.8747 -1.0247 3.1753 26 7 2.5710 -0.0944 2.3385 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.6659 -2.7837 0.7331 37 1 3.6405 -2.7844 4.9572 38 1 4.1667 -3.9495 7.0023 39 1 3.4895 -3.3297 9.6208 40 1 3.6331 -8.2310 6.8836 41 1 2.8324 -7.9918 4.5754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566595797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:12 Heat of formation + Delta-G solvation = 94.389456 kcal Electronic energy + Delta-G solvation = -25170.877015 eV Core-core repulsion = 21474.114215 eV Total energy + Delta-G solvation = -3696.762800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.24393 -39.37293 -37.83494 -37.39331 -34.31174 -33.69999 -32.06971 -30.90788 -30.44454 -28.52612 -27.99459 -27.86726 -25.95843 -24.05089 -23.47105 -21.91646 -21.15470 -20.59915 -19.41683 -17.72071 -17.53229 -16.48767 -16.11743 -15.61773 -15.23172 -14.77388 -14.68426 -14.62818 -14.18589 -14.10031 -13.98505 -13.62553 -13.10190 -12.94929 -12.82548 -12.70597 -12.57249 -12.34093 -12.23906 -12.21913 -11.85284 -11.53042 -11.40806 -11.19903 -11.15297 -10.86611 -10.37396 -10.26104 -10.12399 -9.72837 -9.55885 -9.31215 -9.18632 -7.96980 -7.71808 -6.98726 -6.77063 -4.57184 1.17265 1.86495 1.89370 2.78012 2.84022 3.05437 3.08574 3.28905 3.59373 3.85957 3.88580 3.93298 4.15837 4.26094 4.29345 4.71480 4.78088 4.87743 4.93504 5.03833 5.11623 5.13768 5.16625 5.26224 5.33000 5.48525 5.62333 5.69763 5.72503 5.87242 6.08647 6.37804 6.62237 6.70842 6.84153 6.99600 7.14672 7.42298 7.49252 7.77438 7.93319 8.07297 8.25817 8.44650 8.73494 8.78222 8.89269 9.71973 10.10551 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002821 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.727106 B = 9923.480261 C =10927.601911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.163 4.163 5 N -0.355 5.355 6 C 0.089 3.911 7 C -0.092 4.092 8 C 0.588 3.412 9 O -0.481 6.481 10 N -0.641 5.641 11 C 0.337 3.663 12 C -0.240 4.240 13 C 0.143 3.857 14 C -0.455 4.455 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.784 5.784 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.285 4.285 23 C 0.119 3.881 24 N -0.556 5.556 25 N -0.207 5.207 26 N -0.068 5.068 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.200 0.800 37 H 0.415 0.585 38 H 0.129 0.871 39 H 0.283 0.717 40 H 0.102 0.898 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 11.188 -16.337 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.088 3.912 3 C -0.206 4.206 4 C -0.221 4.221 5 N -0.141 5.141 6 C -0.068 4.068 7 C -0.231 4.231 8 C 0.371 3.629 9 O -0.351 6.351 10 N -0.286 5.286 11 C 0.113 3.887 12 C -0.265 4.265 13 C 0.135 3.865 14 C -0.486 4.486 15 H 0.101 0.899 16 C -0.142 4.142 17 N -0.410 5.410 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.309 4.309 23 C -0.035 4.035 24 N -0.275 5.275 25 N -0.080 5.080 26 N -0.047 5.047 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.251 0.749 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.261 12.121 -16.942 21.263 hybrid contribution 0.468 -0.382 1.333 1.464 sum -3.793 11.740 -15.608 19.895 Atomic orbital electron populations 1.22290 0.91962 1.03765 1.03944 1.21050 0.95149 0.94064 0.80979 1.21984 1.02554 0.92314 1.03721 1.22300 1.02719 1.01368 0.95734 1.50780 1.42611 1.05236 1.15511 1.23203 0.98696 0.86813 0.98051 1.21743 1.11963 0.93887 0.95538 1.16869 0.78851 0.85648 0.81551 1.90880 1.48081 1.33480 1.62620 1.43167 1.59272 1.09513 1.16678 1.18138 0.96859 0.84659 0.89020 1.21557 1.12142 1.00545 0.92283 1.17560 0.86366 0.90043 0.92537 1.19579 1.35678 0.98333 0.95044 0.89930 1.25972 0.93509 0.94598 1.00111 1.69780 1.27575 1.06796 1.36807 0.86251 0.80343 0.79550 0.80257 1.19149 1.20236 1.18521 1.21882 1.12893 0.98733 0.97382 1.21743 0.96117 0.93348 0.92300 1.67207 1.25570 0.97127 1.37642 1.74669 1.13066 0.98116 1.22175 1.81915 1.15996 1.17161 0.89677 0.91208 0.89747 0.91294 0.91231 0.90264 0.90618 0.91052 0.89511 0.91125 0.78293 0.74860 0.85350 0.90613 0.87986 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.74 37.16 0.32 -0.62 16 2 C 0.17 1.22 1.25 -131.82 -0.16 1.06 16 3 C -0.15 -0.94 8.11 37.16 0.30 -0.64 16 4 C -0.16 -0.86 8.30 37.16 0.31 -0.55 16 5 N -0.35 -4.03 3.44 -48.35 -0.17 -4.20 16 6 C 0.09 1.14 10.43 -16.83 -0.18 0.96 16 7 C -0.09 -1.53 6.99 -83.56 -0.58 -2.11 16 8 C 0.59 12.09 7.77 -12.49 -0.10 12.00 16 9 O -0.48 -11.11 15.12 5.28 0.08 -11.03 16 10 N -0.64 -13.92 5.38 -12.45 -0.07 -13.99 16 11 C 0.34 8.52 7.41 -154.76 -1.15 7.37 16 12 C -0.24 -6.28 8.62 -38.47 -0.33 -6.62 16 13 C 0.14 3.83 5.60 -106.55 -0.60 3.24 16 14 C -0.46 -11.86 9.12 -37.65 -0.34 -12.21 16 15 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 16 C 0.08 1.91 5.20 -17.34 -0.09 1.82 16 17 N -0.78 -19.83 10.93 55.55 0.61 -19.22 16 18 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.28 -7.08 9.90 -38.70 -0.38 -7.46 16 23 C 0.12 2.89 11.15 -17.68 -0.20 2.70 16 24 N -0.56 -14.44 7.85 -12.54 -0.10 -14.54 16 25 N -0.21 -3.46 12.04 32.84 0.40 -3.06 16 26 N -0.07 -0.99 12.91 60.35 0.78 -0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.07 0.36 7.44 -51.93 -0.39 -0.03 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.20 2.00 7.63 -52.49 -0.40 1.60 16 37 H 0.42 8.14 8.39 -40.82 -0.34 7.80 16 38 H 0.13 3.37 6.20 -52.49 -0.33 3.04 16 39 H 0.28 6.49 8.29 -40.82 -0.34 6.16 16 40 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 41 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -32.72 354.20 -6.57 -39.28 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.23 Total: 9.47 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.18 Total: -1.07 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.45 Total: -55.22 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.72 -6.57 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566595797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.672 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds