Wall clock time and date at job start Tue Mar 31 2020 11:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 C 1.52998 * 109.46969 * 239.99735 * 2 1 3 5 5 N 1.46501 * 109.46644 * 120.00313 * 2 1 3 6 6 C 1.34814 * 126.59824 * 74.99869 * 5 2 1 7 7 C 1.36621 * 106.83722 * 180.02562 * 6 5 2 8 8 C 1.47482 * 125.77113 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99649 * 179.97438 * 8 7 6 11 11 C 1.39392 * 119.99821 * 175.13620 * 10 8 7 12 12 C 1.38623 * 119.58316 * 184.94190 * 11 10 8 13 13 C 1.40800 * 118.79330 * 179.78146 * 12 11 10 14 14 C 1.41539 * 120.99572 * 180.23853 * 13 12 11 15 15 H 1.08001 * 120.00314 * 203.90285 * 14 13 12 16 16 C 1.40035 * 119.99974 * 23.89874 * 14 13 12 17 17 N 1.30740 * 119.99513 * 16.83203 * 16 14 13 18 18 Si 1.86803 * 119.99988 * 196.82877 * 16 14 13 19 19 H 1.48492 * 109.46782 * 90.00415 * 18 16 14 20 20 H 1.48498 * 109.46818 * 209.99938 * 18 16 14 21 21 H 1.48490 * 109.47227 * 329.99945 * 18 16 14 22 22 C 1.41183 * 118.00783 * 0.48417 * 13 12 11 23 23 C 1.37580 * 119.02230 * 359.75892 * 22 13 12 24 24 N 1.32081 * 121.10981 * 359.97438 * 23 22 13 25 25 N 1.34407 * 108.45223 * 0.26225 * 7 6 5 26 26 N 1.28757 * 109.52569 * 359.55245 * 25 7 6 27 27 H 1.08998 * 109.46957 * 300.00312 * 1 2 3 28 28 H 1.08998 * 109.47152 * 59.99729 * 1 2 3 29 29 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46658 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47278 * 300.00193 * 3 2 1 32 32 H 1.08995 * 109.46932 * 60.00133 * 3 2 1 33 33 H 1.09001 * 109.47359 * 300.00630 * 4 2 1 34 34 H 1.09006 * 109.46835 * 59.99961 * 4 2 1 35 35 H 1.08998 * 109.47438 * 180.02562 * 4 2 1 36 36 H 1.07998 * 126.57955 * 0.02562 * 6 5 2 37 37 H 0.96993 * 120.00384 * 354.86636 * 10 8 7 38 38 H 1.07998 * 120.59845 * 0.02562 * 12 11 10 39 39 H 0.97007 * 119.99791 * 179.97438 * 17 16 14 40 40 H 1.08004 * 120.48688 * 179.77656 * 22 13 12 41 41 H 1.07999 * 119.44393 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0220 -2.0217 1.4105 7 6 2.5627 -2.2215 2.6492 8 6 2.7645 -3.5290 3.3010 9 8 2.4383 -4.5508 2.7282 10 7 3.3114 -3.5913 4.5313 11 6 3.4093 -4.8162 5.1893 12 6 3.8779 -4.8571 6.4932 13 6 3.9656 -6.1029 7.1436 14 6 4.4327 -6.1981 8.4763 15 1 4.8580 -7.1238 8.8346 16 6 4.3434 -5.0918 9.3302 17 7 3.5517 -4.0959 9.0291 18 14 5.3554 -5.0392 10.8995 19 1 6.6686 -4.4045 10.6205 20 1 4.6325 -4.2492 11.9284 21 1 5.5695 -6.4218 11.3970 22 6 3.5786 -7.2547 6.4248 23 6 3.1306 -7.1152 5.1315 24 7 3.0582 -5.9273 4.5587 25 7 2.8747 -1.0247 3.1753 26 7 2.5710 -0.0944 2.3385 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.6659 -2.7837 0.7331 37 1 3.6405 -2.7844 4.9572 38 1 4.1667 -3.9495 7.0023 39 1 3.4895 -3.3297 9.6208 40 1 3.6331 -8.2310 6.8836 41 1 2.8324 -7.9918 4.5754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566595797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:11 Heat of formation + Delta-G solvation = 73.344948 kcal Electronic energy + Delta-G solvation = -25171.789573 eV Core-core repulsion = 21474.114215 eV Total energy + Delta-G solvation = -3697.675358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.35764 -41.11690 -39.45806 -38.29429 -36.16189 -35.51749 -33.05636 -32.52706 -32.03753 -30.25436 -28.45132 -28.41903 -27.91274 -25.30220 -24.66219 -23.83323 -22.76581 -21.75238 -20.83886 -19.45000 -18.85543 -17.70435 -17.27644 -17.17439 -16.97848 -16.07119 -16.00042 -15.86602 -15.80061 -15.42470 -15.06421 -14.96650 -14.63750 -14.34711 -14.11924 -13.66069 -13.38954 -13.33785 -13.18917 -13.17736 -12.93175 -12.77919 -12.65694 -12.46227 -12.36608 -12.09940 -11.96812 -11.90387 -11.53775 -11.29530 -11.27622 -11.15685 -10.38404 -9.95831 -9.65287 -8.88052 -8.64724 -6.56132 0.09583 0.44270 0.98311 1.00871 1.01986 1.41052 1.54833 1.58685 2.04107 2.19969 2.28270 2.81915 3.09572 3.22180 3.62950 3.65361 3.75443 3.76734 3.88316 4.14272 4.18550 4.50729 4.57761 4.59990 4.67661 4.72358 4.78352 4.79401 4.81019 4.82155 4.93191 5.07162 5.07754 5.19446 5.22112 5.26754 5.48686 5.53383 5.61650 5.90113 6.09172 6.40422 6.55093 6.78470 6.82737 6.87186 7.17583 7.79917 8.26232 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.002821 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.727106 B = 9923.480261 C =10927.601911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.157 3.843 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.337 5.337 6 C 0.112 3.888 7 C -0.120 4.120 8 C 0.591 3.409 9 O -0.510 6.510 10 N -0.643 5.643 11 C 0.334 3.666 12 C -0.261 4.261 13 C 0.115 3.885 14 C -0.482 4.482 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.812 5.812 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.255 1.255 22 C -0.297 4.297 23 C 0.116 3.884 24 N -0.577 5.577 25 N -0.231 5.231 26 N -0.078 5.078 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.230 0.770 37 H 0.421 0.579 38 H 0.120 0.880 39 H 0.292 0.708 40 H 0.119 0.881 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 11.998 -17.723 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.123 5.123 6 C -0.046 4.046 7 C -0.260 4.260 8 C 0.376 3.624 9 O -0.382 6.382 10 N -0.288 5.288 11 C 0.109 3.891 12 C -0.286 4.286 13 C 0.106 3.894 14 C -0.513 4.513 15 H 0.105 0.895 16 C -0.180 4.180 17 N -0.437 5.437 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.321 4.321 23 C -0.037 4.037 24 N -0.297 5.297 25 N -0.104 5.104 26 N -0.058 5.058 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.247 0.753 37 H 0.258 0.742 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.733 12.977 -18.359 22.976 hybrid contribution 0.527 -0.540 1.622 1.789 sum -4.205 12.437 -16.737 21.272 Atomic orbital electron populations 1.22326 0.90436 1.04115 1.04800 1.21659 0.96272 0.94439 0.79944 1.22027 1.01845 0.91914 1.04674 1.22355 1.02137 1.01860 0.95527 1.51213 1.40606 1.04857 1.15600 1.23553 0.96453 0.87863 0.96773 1.21320 1.15128 0.92371 0.97147 1.17266 0.77529 0.86856 0.80773 1.90841 1.49226 1.34988 1.63146 1.43216 1.59600 1.08682 1.17296 1.18346 0.95998 0.85681 0.89052 1.21516 1.13870 1.00290 0.92941 1.17998 0.86943 0.90925 0.93493 1.19889 1.36561 0.99474 0.95358 0.89463 1.26885 0.94026 0.93633 1.03452 1.69831 1.28205 1.07369 1.38283 0.85097 0.78440 0.79834 0.75737 1.18636 1.19237 1.17859 1.22090 1.13184 0.99029 0.97780 1.22273 0.95091 0.93962 0.92411 1.67337 1.26478 0.97733 1.38127 1.74644 1.14079 0.98337 1.23376 1.81829 1.16389 1.17005 0.90596 0.92763 0.86495 0.91214 0.92373 0.86880 0.92109 0.90534 0.86406 0.92109 0.75333 0.74153 0.86269 0.89714 0.86284 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.74 71.98 0.63 -0.75 16 2 C 0.16 1.85 1.25 3.60 0.00 1.85 16 3 C -0.15 -1.55 8.11 71.98 0.58 -0.96 16 4 C -0.16 -1.15 8.30 71.98 0.60 -0.55 16 5 N -0.34 -7.19 3.44 -306.87 -1.06 -8.24 16 6 C 0.11 2.72 10.43 83.86 0.87 3.60 16 7 C -0.12 -4.03 6.99 40.81 0.29 -3.74 16 8 C 0.59 24.85 7.77 86.68 0.67 25.52 16 9 O -0.51 -23.88 15.12 -4.02 -0.06 -23.94 16 10 N -0.64 -28.97 5.38 -311.56 -1.68 -30.65 16 11 C 0.33 17.45 7.41 132.78 0.98 18.44 16 12 C -0.26 -14.19 8.62 22.99 0.20 -13.99 16 13 C 0.11 6.30 5.60 -21.12 -0.12 6.19 16 14 C -0.48 -25.55 9.12 23.52 0.21 -25.33 16 15 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 16 C 0.04 1.85 5.20 85.29 0.44 2.29 16 17 N -0.81 -41.70 10.93 21.84 0.24 -41.46 16 18 Si 0.99 37.12 29.59 68.60 2.03 39.15 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 22 C -0.30 -14.96 9.90 22.84 0.23 -14.73 16 23 C 0.12 5.67 11.15 84.50 0.94 6.61 16 24 N -0.58 -30.47 7.85 -193.57 -1.52 -31.99 16 25 N -0.23 -7.86 12.04 -50.01 -0.60 -8.47 16 26 N -0.08 -2.27 12.91 37.02 0.48 -1.79 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.08 0.50 7.44 -2.39 -0.02 0.48 16 34 H 0.12 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.23 4.06 7.63 -2.91 -0.02 4.04 16 37 H 0.42 17.42 8.39 -92.71 -0.78 16.64 16 38 H 0.12 6.57 6.20 -2.91 -0.02 6.55 16 39 H 0.29 13.50 8.29 -92.70 -0.77 12.73 16 40 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 41 H 0.16 6.37 8.06 -2.91 -0.02 6.34 16 Total: -1.00 -73.18 354.20 4.66 -68.52 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.29 Total: 34.44 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.54 Total: 4.43 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.14 Total: -122.60 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -73.18 4.66 -68.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566595797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.862 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds