Wall clock time and date at job start Tue Mar 31 2020 10:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.50696 * 109.47078 * 119.99784 * 2 1 3 5 5 N 1.31075 * 126.66224 * 300.17554 * 4 2 1 6 6 N 1.28845 * 107.98742 * 180.24596 * 5 4 2 7 7 N 1.28730 * 109.39734 * 359.74549 * 6 5 4 8 8 N 1.29020 * 108.81261 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43942 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47240 * 90.01571 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09001 * 109.47095 * 300.00359 * 1 2 3 28 28 H 1.08998 * 109.47124 * 60.00147 * 1 2 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46904 * 240.00156 * 2 1 3 31 31 H 1.09002 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47281 * 300.00043 * 3 2 1 33 33 H 1.09001 * 109.47525 * 59.99905 * 3 2 1 34 34 H 1.09004 * 109.47011 * 330.01735 * 9 8 7 35 35 H 1.08999 * 109.47192 * 210.02193 * 9 8 7 36 36 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 37 37 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 39 39 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 41 41 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8096 -1.8087 1.2632 9 6 3.3289 -2.5421 0.1062 10 6 2.3502 -3.6183 -0.2870 11 8 1.3200 -3.7588 0.3374 12 7 2.6192 -4.4243 -1.3333 13 6 1.6763 -5.3572 -1.7531 14 6 0.8575 -5.9883 -0.8291 15 6 -0.0737 -6.9183 -1.2514 16 6 -0.2042 -7.2269 -2.5990 17 6 0.5855 -6.6173 -3.5304 18 6 1.5415 -5.6666 -3.1269 19 6 2.3621 -5.0324 -4.0832 20 1 2.7842 -4.0607 -3.8732 21 6 2.6294 -5.6624 -5.3040 22 7 2.5668 -6.9662 -5.3950 23 14 3.0754 -4.6420 -6.8037 24 1 3.3088 -5.5407 -7.9625 25 1 1.9625 -3.7098 -7.1171 26 1 4.3089 -3.8638 -6.5239 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.2853 -2.9972 0.3639 35 1 3.4670 -1.8541 -0.7279 36 1 3.4701 -4.3539 -1.7935 37 1 0.9506 -5.7564 0.2216 38 1 -0.7061 -7.4093 -0.5266 39 1 -0.9369 -7.9555 -2.9129 40 1 0.4762 -6.8637 -4.5762 41 1 2.4121 -7.5010 -4.6005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567424557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:27 Heat of formation + Delta-G solvation = 90.762572 kcal Electronic energy + Delta-G solvation = -26107.332448 eV Core-core repulsion = 22410.412375 eV Total energy + Delta-G solvation = -3696.920073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.16747 -40.00188 -37.73745 -36.27725 -35.36125 -34.25196 -34.03065 -31.50846 -29.94774 -29.49510 -28.03852 -27.40574 -25.27369 -24.45530 -23.56490 -21.98622 -21.21830 -20.70321 -19.90512 -18.32805 -17.74653 -17.70151 -16.37846 -16.12693 -15.76502 -15.38056 -14.88354 -14.71136 -14.35565 -14.13377 -13.72427 -13.45161 -13.31889 -12.98688 -12.75914 -12.43397 -12.40235 -12.18675 -12.16542 -11.82698 -11.63434 -11.53741 -11.35742 -11.26321 -11.18872 -10.97103 -10.85651 -10.56981 -10.52575 -10.01422 -9.91460 -9.60683 -9.28673 -9.11059 -7.79697 -7.57016 -7.18165 -4.66995 1.20545 1.81109 2.22546 2.29311 2.63516 2.91464 3.00104 3.11296 3.20386 3.37944 3.78705 3.82990 4.08076 4.35881 4.39011 4.58587 4.72357 4.76710 4.88104 5.06070 5.28020 5.39333 5.42392 5.52630 5.64585 5.68988 5.72936 5.96293 6.06308 6.07252 6.12043 6.14608 6.31314 6.57963 6.75683 6.92140 7.18031 7.28906 7.50282 7.56588 7.72048 7.81591 8.00021 8.06578 8.38510 8.53368 8.64771 8.67024 9.83602 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.004026 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.215803 B = 6953.644358 C = 7958.408049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.012 4.012 3 C -0.142 4.142 4 C 0.204 3.796 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.087 5.087 8 N -0.289 5.289 9 C 0.092 3.908 10 C 0.482 3.518 11 O -0.520 6.520 12 N -0.621 5.621 13 C -0.004 4.004 14 C -0.067 4.067 15 C -0.240 4.240 16 C -0.087 4.087 17 C -0.207 4.207 18 C 0.096 3.904 19 C -0.525 4.525 20 H 0.075 0.925 21 C 0.041 3.959 22 N -0.789 5.789 23 Si 1.063 2.937 24 H -0.273 1.273 25 H -0.274 1.274 26 H -0.276 1.276 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.406 0.594 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 11.174 1.609 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.200 4.200 4 C -0.074 4.074 5 N -0.152 5.152 6 N -0.072 5.072 7 N -0.072 5.072 8 N -0.090 5.090 9 C -0.034 4.034 10 C 0.265 3.735 11 O -0.396 6.396 12 N -0.264 5.264 13 C -0.098 4.098 14 C -0.087 4.087 15 C -0.260 4.260 16 C -0.106 4.106 17 C -0.227 4.227 18 C 0.091 3.909 19 C -0.553 4.553 20 H 0.093 0.907 21 C -0.182 4.182 22 N -0.412 5.412 23 Si 0.887 3.113 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.201 1.201 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.241 0.759 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.399 10.753 1.874 11.432 hybrid contribution 0.063 -0.156 0.438 0.469 sum 3.462 10.596 2.311 11.384 Atomic orbital electron populations 1.21820 0.91704 1.03482 1.03170 1.19802 0.97984 0.95895 0.89707 1.21844 1.01103 0.93503 1.03596 1.26047 0.94581 0.88853 0.97916 1.74917 1.19840 1.22078 0.98355 1.78561 1.06987 0.99096 1.22518 1.78858 1.20398 1.20649 0.87313 1.47834 1.34445 1.19867 1.06830 1.22020 0.99374 0.95928 0.86095 1.20201 0.87456 0.83044 0.82773 1.90771 1.26284 1.70458 1.52106 1.42614 1.19034 1.34093 1.30639 1.17496 0.99563 1.00200 0.92492 1.20691 0.95625 0.94485 0.97926 1.20278 1.05117 1.05421 0.95204 1.20442 0.98156 0.98504 0.93481 1.20778 0.99662 1.03784 0.98489 1.17449 0.91804 0.92184 0.89434 1.20325 1.28360 1.05392 1.01186 0.90717 1.26994 0.92621 0.96410 1.02190 1.70475 1.28285 1.06243 1.36178 0.83646 0.77517 0.75500 0.74669 1.19743 1.19950 1.20102 0.91218 0.90896 0.91697 0.88964 0.92459 0.90773 0.91042 0.84240 0.84426 0.75855 0.87275 0.88881 0.88990 0.87204 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 2 C -0.01 -0.13 3.26 -91.77 -0.30 -0.43 16 3 C -0.14 -1.14 9.17 37.16 0.34 -0.80 16 4 C 0.20 2.86 6.64 -155.43 -1.03 1.82 16 5 N -0.30 -4.96 12.36 32.70 0.40 -4.55 16 6 N -0.08 -1.39 13.43 60.35 0.81 -0.58 16 7 N -0.09 -1.46 13.29 60.35 0.80 -0.66 16 8 N -0.29 -4.14 2.83 -59.45 -0.17 -4.31 16 9 C 0.09 1.02 6.57 -5.20 -0.03 0.99 16 10 C 0.48 7.84 7.74 -10.98 -0.09 7.76 16 11 O -0.52 -10.80 13.85 5.56 0.08 -10.72 16 12 N -0.62 -10.74 4.90 -9.48 -0.05 -10.78 16 13 C 0.00 -0.10 6.33 -83.17 -0.53 -0.62 16 14 C -0.07 -1.52 8.69 -39.44 -0.34 -1.87 16 15 C -0.24 -5.31 10.04 -39.36 -0.39 -5.71 16 16 C -0.09 -1.92 9.97 -39.99 -0.40 -2.32 16 17 C -0.21 -4.89 7.87 -39.28 -0.31 -5.20 16 18 C 0.10 2.24 5.32 -106.65 -0.57 1.67 16 19 C -0.52 -11.79 8.35 -37.86 -0.32 -12.10 16 20 H 0.07 1.54 7.39 -52.49 -0.39 1.16 16 21 C 0.04 0.91 4.95 -17.33 -0.09 0.83 16 22 N -0.79 -18.84 12.32 55.55 0.68 -18.16 16 23 Si 1.06 18.87 30.00 -169.99 -5.10 13.77 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 26 H -0.28 -4.51 7.11 56.52 0.40 -4.11 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.84 6.84 -51.93 -0.36 0.48 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.14 0.98 7.12 -51.93 -0.37 0.61 16 36 H 0.41 5.89 7.95 -40.82 -0.32 5.56 16 37 H 0.11 2.51 6.20 -52.49 -0.33 2.18 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 2.66 6.45 -52.49 -0.34 2.32 16 41 H 0.30 7.42 6.62 -40.82 -0.27 7.15 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -30.76 350.06 -5.94 -36.70 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.97 Total: 11.23 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.71 Total: -17.22 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 2.49 Total: -39.04 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.10 Total: 13.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.76 -5.94 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567424557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.465 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds