Wall clock time and date at job start Tue Mar 31 2020 10:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46928 * 2 1 4 4 C 1.50696 * 109.47078 * 119.99784 * 2 1 3 5 5 N 1.31075 * 126.66224 * 300.17554 * 4 2 1 6 6 N 1.28845 * 107.98742 * 180.24596 * 5 4 2 7 7 N 1.28730 * 109.39734 * 359.74549 * 6 5 4 8 8 N 1.29020 * 108.81261 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43942 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47240 * 90.01571 * 9 8 7 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09001 * 109.47095 * 300.00359 * 1 2 3 28 28 H 1.08998 * 109.47124 * 60.00147 * 1 2 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46904 * 240.00156 * 2 1 3 31 31 H 1.09002 * 109.47182 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47281 * 300.00043 * 3 2 1 33 33 H 1.09001 * 109.47525 * 59.99905 * 3 2 1 34 34 H 1.09004 * 109.47011 * 330.01735 * 9 8 7 35 35 H 1.08999 * 109.47192 * 210.02193 * 9 8 7 36 36 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 37 37 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 39 39 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 40 40 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 41 41 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7950 -0.3801 2.4765 6 7 2.4016 -1.2268 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8096 -1.8087 1.2632 9 6 3.3289 -2.5421 0.1062 10 6 2.3502 -3.6183 -0.2870 11 8 1.3200 -3.7588 0.3374 12 7 2.6192 -4.4243 -1.3333 13 6 1.6763 -5.3572 -1.7531 14 6 0.8575 -5.9883 -0.8291 15 6 -0.0737 -6.9183 -1.2514 16 6 -0.2042 -7.2269 -2.5990 17 6 0.5855 -6.6173 -3.5304 18 6 1.5415 -5.6666 -3.1269 19 6 2.3621 -5.0324 -4.0832 20 1 2.7842 -4.0607 -3.8732 21 6 2.6294 -5.6624 -5.3040 22 7 2.5668 -6.9662 -5.3950 23 14 3.0754 -4.6420 -6.8037 24 1 3.3088 -5.5407 -7.9625 25 1 1.9625 -3.7098 -7.1171 26 1 4.3089 -3.8638 -6.5239 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.2853 -2.9972 0.3639 35 1 3.4670 -1.8541 -0.7279 36 1 3.4701 -4.3539 -1.7935 37 1 0.9506 -5.7564 0.2216 38 1 -0.7061 -7.4093 -0.5266 39 1 -0.9369 -7.9555 -2.9129 40 1 0.4762 -6.8637 -4.5762 41 1 2.4121 -7.5010 -4.6005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567424557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:26 Heat of formation + Delta-G solvation = 71.753548 kcal Electronic energy + Delta-G solvation = -26108.156742 eV Core-core repulsion = 22410.412375 eV Total energy + Delta-G solvation = -3697.744367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.32540 -41.45221 -39.36016 -37.19748 -36.50955 -35.82423 -35.67698 -32.61862 -31.37908 -31.17020 -29.43943 -28.14014 -26.97928 -25.50688 -24.83611 -23.45602 -22.82654 -21.79463 -21.30937 -19.92505 -19.09405 -18.86615 -17.76346 -17.45251 -16.94741 -16.56730 -16.49528 -15.86038 -15.58979 -15.56590 -15.07489 -14.58992 -14.50821 -14.22770 -14.20365 -13.90722 -13.79919 -13.40285 -13.16682 -13.11616 -12.72556 -12.67679 -12.55950 -12.42205 -12.33817 -12.30894 -12.16168 -11.93702 -11.92094 -11.52710 -11.22229 -11.09107 -10.86061 -10.71661 -9.58173 -9.30105 -8.87792 -6.42085 0.05683 0.66123 0.80222 0.89710 1.10166 1.48901 1.59179 1.69967 1.85014 2.12682 2.37664 2.70989 2.84493 3.12234 3.44414 3.53666 3.57823 3.84040 3.98924 4.02709 4.16605 4.34539 4.35128 4.37580 4.60382 4.63299 4.74672 4.79290 4.88427 4.89530 4.92991 5.03157 5.10692 5.23007 5.23810 5.33551 5.46317 5.62828 5.77379 5.85524 5.99175 6.09475 6.30962 6.47670 6.78228 6.90851 7.14498 7.45257 8.07044 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014310 B = 0.004026 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.215803 B = 6953.644358 C = 7958.408049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 C -0.136 4.136 4 C 0.210 3.790 5 N -0.326 5.326 6 N -0.105 5.105 7 N -0.104 5.104 8 N -0.290 5.290 9 C 0.096 3.904 10 C 0.485 3.515 11 O -0.567 6.567 12 N -0.617 5.617 13 C 0.000 4.000 14 C -0.085 4.085 15 C -0.249 4.249 16 C -0.093 4.093 17 C -0.228 4.228 18 C 0.072 3.928 19 C -0.535 4.535 20 H 0.094 0.906 21 C 0.008 3.992 22 N -0.814 5.814 23 Si 1.113 2.887 24 H -0.283 1.283 25 H -0.268 1.268 26 H -0.246 1.246 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.030 0.970 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.177 0.823 35 H 0.190 0.810 36 H 0.421 0.579 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 13.457 0.117 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.194 4.194 4 C -0.068 4.068 5 N -0.175 5.175 6 N -0.099 5.099 7 N -0.090 5.090 8 N -0.091 5.091 9 C -0.028 4.028 10 C 0.272 3.728 11 O -0.447 6.447 12 N -0.261 5.261 13 C -0.094 4.094 14 C -0.105 4.105 15 C -0.269 4.269 16 C -0.112 4.112 17 C -0.248 4.248 18 C 0.068 3.932 19 C -0.562 4.562 20 H 0.112 0.888 21 C -0.210 4.210 22 N -0.437 5.437 23 Si 0.930 3.070 24 H -0.209 1.209 25 H -0.193 1.193 26 H -0.169 1.169 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.194 0.806 35 H 0.207 0.793 36 H 0.259 0.741 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.004 13.047 0.401 13.980 hybrid contribution -0.494 -0.888 0.952 1.392 sum 4.510 12.160 1.353 13.039 Atomic orbital electron populations 1.21809 0.92387 1.01512 1.04248 1.20113 0.97329 0.97390 0.88696 1.21837 1.01732 0.91570 1.04285 1.26743 0.93292 0.88451 0.98300 1.74848 1.20495 1.22584 0.99542 1.78525 1.07932 0.99872 1.23561 1.78771 1.20879 1.20793 0.88512 1.48044 1.34371 1.19953 1.06713 1.22397 0.98407 0.95346 0.86689 1.20991 0.87536 0.83151 0.81169 1.90765 1.28761 1.71761 1.53379 1.42540 1.18845 1.33580 1.31159 1.17569 0.99672 1.00278 0.91901 1.20804 0.96613 0.95295 0.97809 1.20534 1.05299 1.05402 0.95619 1.20644 0.98405 0.98791 0.93323 1.20812 1.00814 1.05053 0.98106 1.17754 0.92388 0.92667 0.90437 1.20594 1.28265 1.06016 1.01341 0.88765 1.28339 0.91389 0.96436 1.04809 1.70584 1.30501 1.07260 1.35346 0.83038 0.78614 0.74233 0.71068 1.20851 1.19315 1.16917 0.91904 0.88145 0.95047 0.86806 0.91418 0.88247 0.92211 0.80606 0.79293 0.74069 0.87985 0.87335 0.86972 0.88585 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.18 71.98 0.66 -2.22 16 2 C -0.01 -0.25 3.26 -11.54 -0.04 -0.28 16 3 C -0.14 -1.71 9.17 71.98 0.66 -1.05 16 4 C 0.21 5.51 6.64 138.13 0.92 6.43 16 5 N -0.33 -10.52 12.36 -50.45 -0.62 -11.14 16 6 N -0.11 -3.75 13.43 37.01 0.50 -3.25 16 7 N -0.10 -3.40 13.29 37.02 0.49 -2.91 16 8 N -0.29 -7.68 2.83 -341.99 -0.97 -8.65 16 9 C 0.10 1.76 6.57 85.63 0.56 2.33 16 10 C 0.49 14.83 7.74 87.65 0.68 15.51 16 11 O -0.57 -23.37 13.85 -3.03 -0.04 -23.42 16 12 N -0.62 -20.15 4.90 -302.28 -1.48 -21.64 16 13 C 0.00 0.01 6.33 38.88 0.25 0.25 16 14 C -0.08 -3.88 8.69 22.36 0.19 -3.69 16 15 C -0.25 -11.09 10.04 22.42 0.22 -10.86 16 16 C -0.09 -4.15 9.97 22.01 0.22 -3.93 16 17 C -0.23 -10.95 7.87 22.47 0.18 -10.77 16 18 C 0.07 3.36 5.32 -21.18 -0.11 3.24 16 19 C -0.53 -23.31 8.35 23.38 0.20 -23.12 16 20 H 0.09 3.62 7.39 -2.91 -0.02 3.60 16 21 C 0.01 0.35 4.95 85.26 0.42 0.77 16 22 N -0.81 -39.15 12.32 21.83 0.27 -38.88 16 23 Si 1.11 36.00 30.00 68.60 2.06 38.06 16 24 H -0.28 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.27 -8.38 7.11 99.48 0.71 -7.68 16 26 H -0.25 -6.76 7.11 99.48 0.71 -6.05 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 1.56 6.84 -2.39 -0.02 1.54 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.18 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.19 1.57 7.12 -2.39 -0.02 1.55 16 36 H 0.42 10.99 7.95 -92.71 -0.74 10.26 16 37 H 0.10 4.78 6.20 -2.91 -0.02 4.76 16 38 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 40 H 0.10 4.80 6.45 -2.91 -0.02 4.78 16 41 H 0.29 14.47 6.62 -92.70 -0.61 13.86 16 Total: -1.00 -70.47 350.06 5.70 -64.76 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.49 Total: 34.46 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 5.01 Total: -27.40 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.82 Total: -86.47 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.42 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.06 Total: 38.06 kcal Total: -70.47 5.70 -64.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567424557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.517 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds