Wall clock time and date at job start Tue Mar 31 2020 10:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35127 * 125.55166 * 2 1 4 4 C 1.40984 * 108.23633 * 180.02562 * 3 2 1 5 5 N 1.33314 * 126.35482 * 179.97438 * 4 3 2 6 6 C 1.32907 * 119.99567 * 0.02562 * 5 4 3 7 7 O 1.21593 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99593 * 180.27676 * 6 5 4 9 9 C 1.52996 * 109.47159 * 179.72835 * 8 6 5 10 10 C 1.50697 * 109.47491 * 179.97438 * 9 8 6 11 11 N 1.31801 * 119.12037 * 269.72743 * 10 9 8 12 12 C 1.32340 * 120.81378 * 179.75364 * 11 10 9 13 13 C 1.38593 * 119.10732 * 0.50913 * 12 11 10 14 14 C 1.38603 * 118.39688 * 359.74725 * 13 12 11 15 15 N 1.31790 * 119.12400 * 89.99468 * 10 9 8 16 16 N 1.37282 * 107.28723 * 0.24352 * 4 3 2 17 17 H 0.97003 * 126.34520 * 179.71939 * 16 4 3 18 18 N 1.36342 * 125.54790 * 180.02562 * 2 1 3 19 19 C 1.46492 * 125.86417 * 0.02562 * 18 2 1 20 20 C 1.50701 * 109.47268 * 85.00099 * 19 18 2 21 21 H 1.07997 * 120.00109 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99794 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00470 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47434 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47032 * 120.00300 * 24 22 20 27 27 H 1.48506 * 109.47225 * 239.99988 * 24 22 20 28 28 H 1.09004 * 109.46835 * 89.97602 * 1 2 3 29 29 H 1.09004 * 109.47578 * 209.97876 * 1 2 3 30 30 H 1.09002 * 109.46936 * 329.97977 * 1 2 3 31 31 H 1.07991 * 125.88180 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46965 * 299.72693 * 8 6 5 33 33 H 1.08994 * 109.47464 * 59.72784 * 8 6 5 34 34 H 1.09004 * 109.47066 * 299.99797 * 9 8 6 35 35 H 1.09000 * 109.47665 * 59.99605 * 9 8 6 36 36 H 1.08002 * 120.44125 * 180.23374 * 12 11 10 37 37 H 1.07995 * 120.80266 * 179.76985 * 13 12 11 38 38 H 1.08002 * 120.44486 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.47458 * 205.00179 * 19 18 2 40 40 H 1.09005 * 109.47174 * 324.99965 * 19 18 2 41 41 H 0.96998 * 119.99818 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6798 -0.0006 5 7 4.7126 1.4696 -0.0013 6 6 4.5659 2.7905 -0.0009 7 8 3.4523 3.2787 0.0005 8 6 5.7800 3.6833 -0.0080 9 6 5.3363 5.1475 -0.0128 10 6 6.5502 6.0404 -0.0192 11 7 7.0664 6.4295 1.1294 12 6 8.1349 7.2096 1.1629 13 6 8.7039 7.6252 -0.0305 14 6 8.1296 7.1995 -1.2180 15 7 7.0643 6.4157 -1.1732 16 7 3.6379 -0.6930 -0.0065 17 1 4.4189 -1.2683 -0.0121 18 7 2.2996 -1.1093 -0.0005 19 6 1.8327 -2.4978 -0.0016 20 6 1.5557 -2.9335 -1.4175 21 1 1.7115 -2.2449 -2.2347 22 6 1.1034 -4.2113 -1.6695 23 7 0.9132 -5.0499 -0.6743 24 14 0.7594 -4.7512 -3.4244 25 1 1.0503 -3.6297 -4.3534 26 1 1.6225 -5.9110 -3.7637 27 1 -0.6676 -5.1422 -3.5514 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 1.9488 2.1231 -0.0004 32 1 6.3796 3.4883 0.8813 33 1 6.3747 3.4810 -0.8987 34 1 4.7367 5.3425 -0.9020 35 1 4.7415 5.3500 0.8779 36 1 8.5551 7.5217 2.1076 37 1 9.5739 8.2650 -0.0351 38 1 8.5463 7.5032 -2.1671 39 1 2.5994 -3.1394 0.4325 40 1 0.9187 -2.5743 0.5874 41 1 0.5953 -5.9490 -0.8518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573297804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:41 Heat of formation + Delta-G solvation = 83.959692 kcal Electronic energy + Delta-G solvation = -24355.169923 eV Core-core repulsion = 20657.954854 eV Total energy + Delta-G solvation = -3697.215068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46291 -41.95525 -40.05405 -36.12704 -35.19557 -34.73441 -34.65424 -33.69874 -32.47510 -31.68660 -28.85740 -28.64271 -26.83299 -25.43329 -24.89529 -23.59944 -22.45416 -21.13076 -20.38797 -18.92758 -18.51538 -18.45708 -17.88222 -17.08526 -16.83341 -16.63208 -16.36218 -16.03839 -15.91258 -15.66747 -15.33440 -14.55908 -14.44495 -14.33962 -14.26911 -14.01423 -13.78226 -13.71828 -13.59642 -13.20764 -13.03899 -12.90700 -12.74858 -12.32200 -12.10482 -12.00019 -11.82680 -11.74372 -11.10211 -10.83392 -10.77503 -10.41635 -10.33856 -10.18291 -9.88272 -8.62525 -8.29378 -6.56920 -0.05996 0.12806 0.20608 0.53251 1.36347 1.41606 1.46365 1.51883 2.29693 2.63943 2.81695 2.85043 2.92177 2.95611 3.29392 3.60733 3.68367 3.80472 4.09776 4.21303 4.22671 4.24056 4.27505 4.27682 4.50908 4.66747 4.68984 4.81386 4.82780 4.84634 4.92157 5.00157 5.07839 5.08749 5.16225 5.31082 5.50166 5.50601 5.68629 5.97072 6.11295 6.11639 6.40894 6.60911 6.84175 7.16558 7.16697 7.85560 8.65764 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029282 B = 0.002120 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.985379 B =13201.477057 C =13508.039338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.198 3.802 3 C -0.346 4.346 4 C 0.455 3.545 5 N -0.716 5.716 6 C 0.485 3.515 7 O -0.609 6.609 8 C -0.086 4.086 9 C -0.029 4.029 10 C 0.308 3.692 11 N -0.543 5.543 12 C 0.135 3.865 13 C -0.218 4.218 14 C 0.134 3.866 15 N -0.544 5.544 16 N -0.463 5.463 17 H 0.453 0.547 18 N -0.344 5.344 19 C 0.265 3.735 20 C -0.561 4.561 21 H 0.057 0.943 22 C 0.032 3.968 23 N -0.911 5.911 24 Si 0.963 3.037 25 H -0.274 1.274 26 H -0.279 1.279 27 H -0.272 1.272 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.200 0.800 37 H 0.189 0.811 38 H 0.199 0.801 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 17.790 2.221 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.377 4.377 4 C 0.207 3.793 5 N -0.481 5.481 6 C 0.272 3.728 7 O -0.493 6.493 8 C -0.127 4.127 9 C -0.068 4.068 10 C 0.040 3.960 11 N -0.258 5.258 12 C -0.030 4.030 13 C -0.239 4.239 14 C -0.030 4.030 15 N -0.259 5.259 16 N -0.185 5.185 17 H 0.301 0.699 18 N -0.130 5.130 19 C 0.148 3.852 20 C -0.599 4.599 21 H 0.075 0.925 22 C -0.171 4.171 23 N -0.549 5.549 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.197 1.197 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.195 0.805 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.217 0.783 37 H 0.207 0.793 38 H 0.216 0.784 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.333 16.617 2.289 19.195 hybrid contribution 0.556 -0.219 -0.838 1.029 sum 9.888 16.398 1.451 19.204 Atomic orbital electron populations 1.20797 0.83444 1.05519 1.05258 1.21955 0.96131 0.84537 0.90319 1.22222 0.91244 1.00447 1.23805 1.19441 0.92263 0.82555 0.85025 1.68796 1.28426 1.05958 1.44875 1.21190 0.89807 0.86620 0.75214 1.90506 1.28379 1.79486 1.50924 1.20941 0.95998 0.91623 1.04149 1.19974 0.91630 0.91004 1.04233 1.23024 0.95434 0.93415 0.84077 1.68286 1.13086 1.13752 1.30633 1.23950 0.88915 0.89127 1.01008 1.23333 1.03872 1.03084 0.93632 1.23944 0.88926 0.89070 1.01110 1.68278 1.13224 1.13976 1.30388 1.44529 0.99047 1.05025 1.69928 0.69860 1.47859 0.93225 1.08115 1.63767 1.19771 0.96349 0.70748 0.98288 1.21533 1.47336 0.98629 0.92420 0.92472 1.25574 0.94182 0.95916 1.01383 1.69964 1.44899 1.07232 1.32820 0.85414 0.78315 0.78102 0.79327 1.19838 1.20477 1.19673 0.88276 0.89654 0.86691 0.80533 0.89064 0.89269 0.89896 0.89722 0.78324 0.79331 0.78417 0.93893 0.91025 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.44 10.09 71.23 0.72 -1.72 16 2 C 0.20 6.95 6.93 41.14 0.29 7.24 16 3 C -0.35 -13.47 9.41 22.23 0.21 -13.26 16 4 C 0.46 18.52 8.07 133.82 1.08 19.60 16 5 N -0.72 -29.67 10.51 -309.87 -3.26 -32.92 16 6 C 0.48 19.52 7.71 87.95 0.68 20.20 16 7 O -0.61 -26.56 12.89 -4.01 -0.05 -26.62 16 8 C -0.09 -2.80 5.76 29.85 0.17 -2.63 16 9 C -0.03 -0.88 4.94 29.85 0.15 -0.73 16 10 C 0.31 8.44 6.90 138.75 0.96 9.40 16 11 N -0.54 -13.47 10.34 -187.84 -1.94 -15.41 16 12 C 0.13 2.11 11.30 84.70 0.96 3.07 16 13 C -0.22 -2.47 10.17 22.44 0.23 -2.24 16 14 C 0.13 2.13 11.31 84.70 0.96 3.09 16 15 N -0.54 -13.65 10.33 -187.84 -1.94 -15.59 16 16 N -0.46 -17.24 7.37 -54.81 -0.40 -17.64 16 17 H 0.45 14.86 8.96 -213.28 -1.91 12.95 16 18 N -0.34 -13.07 3.63 -337.51 -1.23 -14.30 16 19 C 0.27 11.05 5.93 85.63 0.51 11.56 16 20 C -0.56 -26.30 9.39 25.60 0.24 -26.06 16 21 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 22 C 0.03 1.52 5.46 84.65 0.46 1.99 16 23 N -0.91 -45.40 13.29 21.45 0.28 -45.11 16 24 Si 0.96 38.76 29.54 68.60 2.03 40.78 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 28 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.08 2.21 7.14 -2.38 -0.02 2.19 16 30 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.18 7.18 5.77 -2.92 -0.02 7.16 16 32 H 0.09 2.83 8.14 -2.38 -0.02 2.82 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.66 8.10 -2.38 -0.02 2.64 16 35 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 36 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.96 7.18 -2.38 -0.02 2.95 16 41 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -66.94 358.82 0.25 -66.69 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.84 Total: 30.63 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 7.60 Total: 29.49 kcal Atomic # 7 Polarization: -132.49 SS G_CDS: -8.48 Total: -140.98 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -66.94 0.25 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573297804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.650 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds