Wall clock time and date at job start Tue Mar 31 2020 10:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.50697 * 109.46877 * 239.99930 * 2 1 3 5 5 N 1.31067 * 126.65841 * 59.69031 * 4 2 1 6 6 N 1.28842 * 107.99211 * 179.89355 * 5 4 2 7 7 N 1.28743 * 109.39599 * 0.37657 * 6 5 4 8 8 N 1.29020 * 108.80808 * 359.76394 * 7 6 5 9 9 C 1.46493 * 126.44180 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47173 * 270.02686 * 9 8 7 11 11 O 1.21279 * 119.99627 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99758 * 179.97438 * 10 9 8 13 13 C 1.39947 * 119.99726 * 174.87109 * 12 10 9 14 14 C 1.39286 * 119.94557 * 146.37801 * 13 12 10 15 15 C 1.38486 * 120.42949 * 179.97438 * 14 13 12 16 16 C 1.37691 * 120.31595 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88783 * 0.02562 * 16 15 14 18 18 C 1.41412 * 120.20694 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99155 * 151.73772 * 18 17 16 20 20 C 1.39923 * 120.00263 * 331.74929 * 18 17 16 21 21 N 1.30828 * 119.99970 * 349.00055 * 20 18 17 22 22 Si 1.86800 * 119.99928 * 169.00891 * 20 18 17 23 23 H 1.48498 * 109.47143 * 59.99455 * 22 20 18 24 24 H 1.48506 * 109.46932 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47199 * 299.99276 * 22 20 18 26 26 C 1.38239 * 119.94381 * 326.09787 * 13 12 10 27 27 H 1.08999 * 109.47270 * 59.99738 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00124 * 1 2 3 29 29 H 1.08992 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47035 * 119.99786 * 2 1 3 31 31 H 1.08999 * 109.46890 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47077 * 299.99760 * 3 2 1 33 33 H 1.09000 * 109.47387 * 60.00134 * 3 2 1 34 34 H 1.08996 * 109.47329 * 30.02531 * 9 8 7 35 35 H 1.08998 * 109.47363 * 150.02655 * 9 8 7 36 36 H 0.97000 * 120.00930 * 354.86904 * 12 10 9 37 37 H 1.08000 * 119.79083 * 359.97438 * 14 13 12 38 38 H 1.07998 * 119.84292 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.05532 * 179.97438 * 16 15 14 40 40 H 0.97005 * 120.00081 * 180.02562 * 21 20 18 41 41 H 1.08002 * 120.16481 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3978 -1.2294 -3.2350 7 7 3.0104 -2.0951 -2.5052 8 7 2.8092 -1.8091 -1.2633 9 6 3.3282 -2.5426 -0.1063 10 6 2.3459 -3.6144 0.2909 11 8 1.3138 -3.7516 -0.3311 12 7 2.6145 -4.4203 1.3371 13 6 1.6572 -5.3434 1.7731 14 6 2.0611 -6.5710 2.2927 15 6 1.1223 -7.4916 2.7276 16 6 -0.2217 -7.2027 2.6512 17 6 -0.6447 -5.9663 2.1284 18 6 -2.0234 -5.6628 2.0463 19 1 -2.3539 -4.6357 2.0946 20 6 -2.9593 -6.6930 1.9029 21 7 -2.5581 -7.9078 1.6294 22 14 -4.7816 -6.3336 2.1015 23 1 -5.2001 -5.3258 1.0943 24 1 -5.5574 -7.5841 1.9018 25 1 -5.0362 -5.8053 3.4658 26 6 0.3125 -5.0330 1.6926 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.2820 -3.0020 -0.3653 35 1 3.4708 -1.8540 0.7264 36 1 3.4712 -4.3607 1.7880 37 1 3.1131 -6.8064 2.3570 38 1 1.4461 -8.4404 3.1293 39 1 -0.9502 -7.9239 2.9911 40 1 -3.2070 -8.6220 1.5296 41 1 -0.0015 -4.0798 1.2936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579680157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:30 Heat of formation + Delta-G solvation = 98.818583 kcal Electronic energy + Delta-G solvation = -25874.382293 eV Core-core repulsion = 22177.811554 eV Total energy + Delta-G solvation = -3696.570739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.19103 -40.07243 -37.47658 -36.29512 -35.41050 -34.68689 -33.20425 -31.52316 -29.93792 -29.82453 -27.72111 -27.40670 -25.41143 -24.48063 -23.60540 -21.94276 -21.06952 -20.72418 -19.97490 -18.23130 -17.82941 -17.37488 -16.25023 -15.96027 -15.52973 -15.50853 -15.03629 -14.73834 -14.64817 -14.02628 -13.63038 -13.46086 -13.20157 -12.98151 -12.84297 -12.41334 -12.31759 -12.15520 -11.86621 -11.79200 -11.53781 -11.44708 -11.37003 -11.28722 -11.17160 -10.98522 -10.79012 -10.59709 -10.31672 -10.01451 -9.93432 -9.71138 -9.28782 -9.06755 -7.54609 -7.08344 -6.75282 -4.44478 1.16460 1.76328 2.21378 2.28696 2.73782 2.99296 3.05471 3.08237 3.15237 3.22403 3.75414 3.91786 4.01428 4.28726 4.45090 4.51593 4.60252 4.74281 4.86151 5.01861 5.37005 5.41058 5.50184 5.58989 5.64806 5.69005 5.71054 5.95070 6.03832 6.10626 6.15810 6.23762 6.46840 6.78101 6.88717 6.95949 7.16228 7.35208 7.55518 7.80527 7.91460 7.97088 8.07884 8.34594 8.56740 8.63077 8.84008 8.86429 10.18444 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003841 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.946653 B = 7287.519107 C = 8383.875519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.204 3.796 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.086 5.086 8 N -0.293 5.293 9 C 0.093 3.907 10 C 0.488 3.512 11 O -0.491 6.491 12 N -0.656 5.656 13 C 0.145 3.855 14 C -0.256 4.256 15 C -0.093 4.093 16 C -0.164 4.164 17 C 0.119 3.881 18 C -0.457 4.457 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.798 5.798 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.207 4.207 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.281 0.719 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.781 12.300 3.508 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.074 4.074 5 N -0.150 5.150 6 N -0.069 5.069 7 N -0.071 5.071 8 N -0.094 5.094 9 C -0.034 4.034 10 C 0.270 3.730 11 O -0.363 6.363 12 N -0.301 5.301 13 C 0.054 3.946 14 C -0.277 4.277 15 C -0.112 4.112 16 C -0.184 4.184 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.424 5.424 22 Si 0.736 3.264 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.229 4.229 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.048 11.825 1.528 15.592 hybrid contribution -0.237 -0.238 1.142 1.190 sum 9.811 11.587 2.669 15.416 Atomic orbital electron populations 1.21844 0.91492 1.03796 1.03275 1.19803 0.98121 0.95824 0.89529 1.21846 1.00991 0.93549 1.03672 1.26078 0.94461 0.88866 0.97991 1.74926 1.19593 1.22091 0.98346 1.78583 1.06899 0.98943 1.22448 1.78876 1.20453 1.20530 0.87229 1.47830 1.34818 1.19887 1.06819 1.21997 0.99257 0.95772 0.86331 1.20247 0.87929 0.83336 0.81484 1.90903 1.25579 1.68766 1.51048 1.43251 1.18764 1.36759 1.31361 1.17376 0.88035 0.88886 1.00319 1.20034 0.97464 0.94488 1.15739 1.20502 0.93697 0.96955 1.00076 1.21450 0.93911 0.99521 1.03514 1.17493 0.92755 0.90843 0.87297 1.19515 0.90790 0.94244 1.44123 0.90566 1.25888 1.01710 0.94471 0.92260 1.69780 1.36938 1.01583 1.34106 0.86304 0.81351 0.78757 0.79957 1.18978 1.20259 1.18810 1.20923 0.90476 1.02123 1.09337 0.91133 0.90851 0.91426 0.89117 0.92524 0.90980 0.90786 0.84127 0.84398 0.76398 0.89107 0.88831 0.85962 0.90802 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.18 37.16 0.34 -1.26 16 2 C -0.01 -0.11 3.26 -91.77 -0.30 -0.41 16 3 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.20 2.78 6.64 -155.43 -1.03 1.75 16 5 N -0.30 -4.92 12.36 32.70 0.40 -4.52 16 6 N -0.08 -1.34 13.43 60.35 0.81 -0.53 16 7 N -0.09 -1.43 13.29 60.35 0.80 -0.62 16 8 N -0.29 -4.02 2.83 -59.45 -0.17 -4.19 16 9 C 0.09 0.89 6.57 -5.19 -0.03 0.86 16 10 C 0.49 7.40 7.63 -10.98 -0.08 7.31 16 11 O -0.49 -10.45 14.14 5.56 0.08 -10.37 16 12 N -0.66 -9.64 5.34 -9.91 -0.05 -9.70 16 13 C 0.14 2.98 6.26 -83.76 -0.52 2.46 16 14 C -0.26 -5.20 9.97 -39.10 -0.39 -5.59 16 15 C -0.09 -2.06 10.02 -39.69 -0.40 -2.46 16 16 C -0.16 -4.14 8.66 -38.84 -0.34 -4.48 16 17 C 0.12 3.14 5.55 -106.85 -0.59 2.55 16 18 C -0.46 -12.16 9.06 -37.74 -0.34 -12.50 16 19 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 20 C 0.07 1.86 5.25 -17.35 -0.09 1.77 16 21 N -0.80 -20.74 10.82 55.55 0.60 -20.14 16 22 Si 0.91 18.87 29.57 -169.99 -5.03 13.84 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.21 -5.03 8.39 -38.69 -0.32 -5.35 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.71 6.85 -51.93 -0.36 0.36 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.14 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.40 3.89 8.82 -40.82 -0.36 3.53 16 37 H 0.09 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.19 6.18 -52.48 -0.32 2.86 16 40 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.10 2.59 6.44 -52.49 -0.34 2.25 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -34.65 353.41 -6.09 -40.75 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.10 Total: 6.23 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.77 Total: -16.07 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 2.40 Total: -39.70 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.65 -6.09 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579680157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.566 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds