Wall clock time and date at job start Tue Mar 31 2020 10:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.50697 * 109.46877 * 239.99930 * 2 1 3 5 5 N 1.31067 * 126.65841 * 59.69031 * 4 2 1 6 6 N 1.28842 * 107.99211 * 179.89355 * 5 4 2 7 7 N 1.28743 * 109.39599 * 0.37657 * 6 5 4 8 8 N 1.29020 * 108.80808 * 359.76394 * 7 6 5 9 9 C 1.46493 * 126.44180 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47173 * 270.02686 * 9 8 7 11 11 O 1.21279 * 119.99627 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99758 * 179.97438 * 10 9 8 13 13 C 1.39947 * 119.99726 * 174.87109 * 12 10 9 14 14 C 1.39286 * 119.94557 * 146.37801 * 13 12 10 15 15 C 1.38486 * 120.42949 * 179.97438 * 14 13 12 16 16 C 1.37691 * 120.31595 * 359.97438 * 15 14 13 17 17 C 1.40740 * 119.88783 * 0.02562 * 16 15 14 18 18 C 1.41412 * 120.20694 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99155 * 151.73772 * 18 17 16 20 20 C 1.39923 * 120.00263 * 331.74929 * 18 17 16 21 21 N 1.30828 * 119.99970 * 349.00055 * 20 18 17 22 22 Si 1.86800 * 119.99928 * 169.00891 * 20 18 17 23 23 H 1.48498 * 109.47143 * 59.99455 * 22 20 18 24 24 H 1.48506 * 109.46932 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47199 * 299.99276 * 22 20 18 26 26 C 1.38239 * 119.94381 * 326.09787 * 13 12 10 27 27 H 1.08999 * 109.47270 * 59.99738 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00124 * 1 2 3 29 29 H 1.08992 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47035 * 119.99786 * 2 1 3 31 31 H 1.08999 * 109.46890 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47077 * 299.99760 * 3 2 1 33 33 H 1.09000 * 109.47387 * 60.00134 * 3 2 1 34 34 H 1.08996 * 109.47329 * 30.02531 * 9 8 7 35 35 H 1.08998 * 109.47363 * 150.02655 * 9 8 7 36 36 H 0.97000 * 120.00930 * 354.86904 * 12 10 9 37 37 H 1.08000 * 119.79083 * 359.97438 * 14 13 12 38 38 H 1.07998 * 119.84292 * 180.02562 * 15 14 13 39 39 H 1.08004 * 120.05532 * 179.97438 * 16 15 14 40 40 H 0.97005 * 120.00081 * 180.02562 * 21 20 18 41 41 H 1.08002 * 120.16481 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3978 -1.2294 -3.2350 7 7 3.0104 -2.0951 -2.5052 8 7 2.8092 -1.8091 -1.2633 9 6 3.3282 -2.5426 -0.1063 10 6 2.3459 -3.6144 0.2909 11 8 1.3138 -3.7516 -0.3311 12 7 2.6145 -4.4203 1.3371 13 6 1.6572 -5.3434 1.7731 14 6 2.0611 -6.5710 2.2927 15 6 1.1223 -7.4916 2.7276 16 6 -0.2217 -7.2027 2.6512 17 6 -0.6447 -5.9663 2.1284 18 6 -2.0234 -5.6628 2.0463 19 1 -2.3539 -4.6357 2.0946 20 6 -2.9593 -6.6930 1.9029 21 7 -2.5581 -7.9078 1.6294 22 14 -4.7816 -6.3336 2.1015 23 1 -5.2001 -5.3258 1.0943 24 1 -5.5574 -7.5841 1.9018 25 1 -5.0362 -5.8053 3.4658 26 6 0.3125 -5.0330 1.6926 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.2820 -3.0020 -0.3653 35 1 3.4708 -1.8540 0.7264 36 1 3.4712 -4.3607 1.7880 37 1 3.1131 -6.8064 2.3570 38 1 1.4461 -8.4404 3.1293 39 1 -0.9502 -7.9239 2.9911 40 1 -3.2070 -8.6220 1.5296 41 1 -0.0015 -4.0798 1.2936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579680157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:29 Heat of formation + Delta-G solvation = 74.525183 kcal Electronic energy + Delta-G solvation = -25875.435734 eV Core-core repulsion = 22177.811554 eV Total energy + Delta-G solvation = -3697.624179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.31757 -41.43660 -39.14133 -37.19929 -36.56522 -36.22923 -34.92165 -32.60625 -31.77379 -31.10661 -29.14837 -28.13672 -27.28250 -25.51126 -24.83925 -23.35260 -22.76722 -21.81463 -21.34084 -19.72858 -18.99589 -18.69032 -17.55702 -17.33571 -16.85194 -16.81814 -16.50246 -16.32543 -15.60702 -15.34736 -15.03967 -14.67984 -14.49560 -14.22090 -14.03101 -13.88641 -13.59440 -13.21427 -13.15868 -13.11668 -12.85880 -12.72546 -12.62935 -12.48351 -12.33332 -12.30318 -12.26297 -12.00132 -11.91562 -11.63990 -11.32912 -11.14014 -10.98548 -10.71178 -9.38842 -8.78385 -8.60963 -6.41181 0.04955 0.74870 0.83740 0.96741 1.11392 1.33693 1.43459 1.45658 1.58805 2.01317 2.18852 2.73111 2.85210 3.13035 3.40533 3.58598 3.71006 3.86313 3.99129 4.03146 4.17125 4.35046 4.44714 4.60331 4.61759 4.74343 4.79514 4.89553 4.92434 4.96770 5.07393 5.08720 5.10718 5.17850 5.24791 5.30759 5.34986 5.69334 5.79852 6.05958 6.08332 6.31539 6.45179 6.66550 6.91660 6.97696 7.14040 7.45786 8.34035 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003841 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.946653 B = 7287.519107 C = 8383.875519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.136 4.136 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.103 5.103 8 N -0.292 5.292 9 C 0.096 3.904 10 C 0.488 3.512 11 O -0.559 6.559 12 N -0.638 5.638 13 C 0.155 3.845 14 C -0.240 4.240 15 C -0.096 4.096 16 C -0.192 4.192 17 C 0.085 3.915 18 C -0.501 4.501 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.833 5.833 22 Si 0.981 3.019 23 H -0.269 1.269 24 H -0.265 1.265 25 H -0.253 1.253 26 C -0.228 4.228 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.027 0.973 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.184 0.816 35 H 0.199 0.801 36 H 0.432 0.568 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.286 0.714 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.621 13.339 5.345 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.089 5.089 8 N -0.093 5.093 9 C -0.027 4.027 10 C 0.273 3.727 11 O -0.436 6.436 12 N -0.286 5.286 13 C 0.062 3.938 14 C -0.261 4.261 15 C -0.115 4.115 16 C -0.212 4.212 17 C 0.083 3.917 18 C -0.531 4.531 19 H 0.084 0.916 20 C -0.181 4.181 21 N -0.460 5.460 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.177 1.177 26 C -0.250 4.250 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.046 0.954 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.202 0.798 35 H 0.215 0.785 36 H 0.272 0.728 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.969 12.874 3.397 18.587 hybrid contribution -0.936 -0.551 0.600 1.240 sum 12.034 12.323 3.997 17.682 Atomic orbital electron populations 1.21829 0.92865 1.01381 1.04194 1.20114 0.96874 0.97509 0.88769 1.21836 1.01870 0.91475 1.04200 1.26775 0.93221 0.88590 0.98288 1.74840 1.20360 1.22767 0.99753 1.78538 1.08048 0.99854 1.23654 1.78759 1.20904 1.20581 0.88611 1.48098 1.34555 1.19868 1.06806 1.22507 0.98196 0.95213 0.86825 1.21196 0.87747 0.83475 0.80244 1.90908 1.28874 1.70555 1.53220 1.43027 1.18824 1.35380 1.31365 1.17389 0.87870 0.90024 0.98555 1.20524 0.99460 0.93230 1.12864 1.20880 0.92702 0.98576 0.99300 1.21395 0.95292 0.99126 1.05380 1.17836 0.93407 0.92140 0.88354 1.19734 0.92118 0.94344 1.46930 0.91564 1.26694 1.05992 0.94022 0.91387 1.69845 1.38465 1.02404 1.35252 0.85278 0.75723 0.78789 0.80056 1.19338 1.18900 1.17738 1.20912 0.92372 1.01378 1.10340 0.92186 0.88044 0.95368 0.86210 0.91047 0.92519 0.88216 0.79841 0.78458 0.72832 0.84370 0.85987 0.87888 0.90297 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.18 71.98 0.66 -2.47 16 2 C -0.01 -0.19 3.26 -11.54 -0.04 -0.23 16 3 C -0.14 -1.58 9.18 71.98 0.66 -0.92 16 4 C 0.21 5.43 6.64 138.13 0.92 6.35 16 5 N -0.33 -10.83 12.36 -50.45 -0.62 -11.45 16 6 N -0.11 -3.89 13.43 37.01 0.50 -3.39 16 7 N -0.10 -3.35 13.29 37.02 0.49 -2.86 16 8 N -0.29 -7.40 2.83 -341.99 -0.97 -8.37 16 9 C 0.10 1.41 6.57 85.64 0.56 1.97 16 10 C 0.49 13.56 7.63 87.66 0.67 14.23 16 11 O -0.56 -23.99 14.14 -3.03 -0.04 -24.03 16 12 N -0.64 -16.42 5.34 -303.66 -1.62 -18.04 16 13 C 0.15 6.08 6.26 38.10 0.24 6.32 16 14 C -0.24 -8.96 9.97 22.58 0.23 -8.73 16 15 C -0.10 -4.11 10.02 22.20 0.22 -3.88 16 16 C -0.19 -9.97 8.66 22.75 0.20 -9.77 16 17 C 0.09 4.71 5.55 -21.31 -0.12 4.59 16 18 C -0.50 -28.36 9.06 23.46 0.21 -28.14 16 19 H 0.07 3.68 7.87 -2.91 -0.02 3.66 16 20 C 0.03 1.71 5.25 85.25 0.45 2.16 16 21 N -0.83 -45.26 10.82 21.82 0.24 -45.02 16 22 Si 0.98 40.17 29.57 68.60 2.03 42.20 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 26 C -0.23 -11.38 8.39 22.85 0.19 -11.18 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 1.37 6.85 -2.39 -0.02 1.35 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.18 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.20 0.56 7.13 -2.39 -0.02 0.55 16 36 H 0.43 5.86 8.82 -92.71 -0.82 5.04 16 37 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 40 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 41 H 0.09 4.54 6.44 -2.91 -0.02 4.52 16 Total: -1.00 -85.41 353.41 5.30 -80.11 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.26 Total: 20.57 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 5.05 Total: -29.70 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.99 Total: -89.14 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -85.41 5.30 -80.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579680157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.631 kcal (2) G-P(sol) polarization free energy of solvation -85.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds